Wall clock time and date at job start Tue Mar 31 2020 00:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38352 * 119.40396 * 2 1 4 4 C 1.38338 * 119.45640 * 179.72969 * 3 2 1 5 5 C 1.39996 * 118.34732 * 0.52847 * 4 3 2 6 6 C 1.47523 * 120.59544 * 179.71222 * 5 4 3 7 7 O 1.21593 * 119.99429 * 150.81621 * 6 5 4 8 8 N 1.34768 * 120.00371 * 330.81342 * 6 5 4 9 9 C 1.46501 * 119.99751 * 6.76621 * 8 6 5 10 10 C 1.50692 * 109.47829 * 97.21845 * 9 8 6 11 11 H 1.08007 * 119.99447 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00761 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99753 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00430 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47251 * 59.99927 * 14 12 10 16 16 H 1.48504 * 109.47242 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47262 * 299.99846 * 14 12 10 18 18 C 1.46501 * 120.00330 * 186.75716 * 8 6 5 19 19 C 1.53004 * 109.46949 * 125.22874 * 18 8 6 20 20 C 1.52992 * 109.47304 * 245.23041 * 18 8 6 21 21 C 1.40280 * 118.80574 * 359.73549 * 5 4 3 22 22 O 1.35423 * 119.80096 * 180.02562 * 21 5 4 23 23 N 1.31882 * 119.40682 * 180.26980 * 2 1 3 24 24 H 1.08996 * 109.46955 * 269.72902 * 1 2 3 25 25 H 1.09004 * 109.46963 * 149.72944 * 1 2 3 26 26 H 1.08997 * 109.46792 * 29.73174 * 1 2 3 27 27 H 1.07998 * 120.27595 * 359.97438 * 3 2 1 28 28 H 1.07994 * 120.83023 * 180.24205 * 4 3 2 29 29 H 1.09008 * 109.47078 * 217.22229 * 9 8 6 30 30 H 1.09003 * 109.47394 * 337.21004 * 9 8 6 31 31 H 0.97003 * 120.00479 * 180.02562 * 13 12 10 32 32 H 1.08996 * 109.46907 * 5.23503 * 18 8 6 33 33 H 1.09003 * 109.46754 * 60.00181 * 19 18 8 34 34 H 1.08995 * 109.47055 * 180.02562 * 19 18 8 35 35 H 1.08996 * 109.47129 * 300.00590 * 19 18 8 36 36 H 1.09000 * 109.47714 * 60.00036 * 20 18 8 37 37 H 1.09000 * 109.47155 * 180.02562 * 20 18 8 38 38 H 1.09009 * 109.47276 * 299.99866 * 20 18 8 39 39 H 0.96692 * 113.99956 * 269.97378 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 0.0057 5 6 4.2356 -0.0249 -0.0001 6 6 5.7097 -0.0814 -0.0008 7 8 6.2821 -1.0257 0.5082 8 7 6.4220 0.9136 -0.5657 9 6 5.7426 2.1193 -1.0461 10 6 5.8337 3.1986 0.0016 11 1 6.3462 3.0055 0.9325 12 6 5.2631 4.4325 -0.2281 13 7 4.6395 4.6678 -1.3619 14 14 5.3755 5.7701 1.0710 15 1 6.8027 6.0796 1.3407 16 1 4.6880 6.9928 0.5834 17 1 4.7258 5.3016 2.3214 18 6 7.8756 0.7895 -0.6992 19 6 8.2729 0.9960 -2.1622 20 6 8.5597 1.8471 0.1692 21 6 3.4758 -1.2041 -0.0057 22 8 4.0992 -2.4063 -0.0108 23 7 2.1546 -1.1489 -0.0054 24 1 -0.3633 -0.0049 1.0276 25 1 -0.3633 -0.8876 -0.5181 26 1 -0.3633 0.8924 -0.5097 27 1 1.6411 2.1375 -0.0004 28 1 4.1223 2.1344 0.0097 29 1 6.2187 2.4632 -1.9644 30 1 4.6950 1.8920 -1.2434 31 1 4.2383 5.5360 -1.5237 32 1 8.1867 -0.2036 -0.3750 33 1 7.9617 1.9890 -2.4865 34 1 9.3543 0.9032 -2.2617 35 1 7.7855 0.2425 -2.7809 36 1 8.2767 1.7001 1.2115 37 1 9.6412 1.7551 0.0695 38 1 8.2485 2.8403 -0.1551 39 1 4.2802 -2.7517 -0.8956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523281698.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:55 Heat of formation + Delta-G solvation = -23.160932 kcal Electronic energy + Delta-G solvation = -22622.619172 eV Core-core repulsion = 19338.570586 eV Total energy + Delta-G solvation = -3284.048586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.49983 -38.72596 -36.94338 -35.71316 -33.78020 -32.55587 -31.21906 -30.79553 -27.81103 -27.24447 -26.67281 -23.27284 -23.22694 -22.29925 -20.95050 -18.73731 -18.05118 -16.80546 -16.73503 -16.25774 -15.65230 -15.08158 -14.66168 -14.21934 -14.18045 -13.73757 -13.44605 -13.31512 -12.98582 -12.50376 -12.42227 -12.32138 -12.02735 -11.79323 -11.70262 -11.49404 -11.26403 -11.14266 -11.07811 -10.82606 -10.56922 -10.27688 -10.03291 -9.74115 -9.44677 -9.22361 -8.82415 -8.57358 -8.36775 -7.75937 -6.38104 -4.47083 1.11608 1.66018 3.13823 3.19545 3.22600 3.43023 3.70883 3.94197 4.17358 4.24024 4.89279 4.91167 5.22357 5.28795 5.41650 5.52788 5.68015 5.68583 5.74084 5.82723 5.87966 5.93317 6.12041 6.15956 6.18459 6.36678 6.44367 6.59902 6.66479 6.67523 6.75634 7.03012 7.07593 7.10331 7.47323 7.58787 7.83874 7.86533 8.21250 8.28986 8.63527 8.95676 9.20950 10.65700 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.008376 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.219577 B = 3342.103940 C = 4936.139716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.156 3.844 3 C -0.197 4.197 4 C -0.037 4.037 5 C -0.205 4.205 6 C 0.561 3.439 7 O -0.553 6.553 8 N -0.586 5.586 9 C 0.207 3.793 10 C -0.543 4.543 11 H 0.070 0.930 12 C 0.069 3.931 13 N -0.881 5.881 14 Si 0.895 3.105 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.140 3.860 19 C -0.158 4.158 20 C -0.157 4.157 21 C 0.354 3.646 22 O -0.464 6.464 23 N -0.522 5.522 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.139 0.861 28 H 0.216 0.784 29 H 0.039 0.961 30 H 0.060 0.940 31 H 0.270 0.730 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.082 0.918 39 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.585 -3.937 -1.876 5.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.019 3.981 3 C -0.217 4.217 4 C -0.061 4.061 5 C -0.212 4.212 6 C 0.349 3.651 7 O -0.433 6.433 8 N -0.316 5.316 9 C 0.088 3.912 10 C -0.581 4.581 11 H 0.088 0.912 12 C -0.137 4.137 13 N -0.517 5.517 14 Si 0.722 3.278 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.198 1.198 18 C 0.037 3.963 19 C -0.216 4.216 20 C -0.215 4.215 21 C 0.174 3.826 22 O -0.270 6.270 23 N -0.243 5.243 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.157 0.843 28 H 0.232 0.768 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.805 -5.026 -1.146 5.869 hybrid contribution 0.498 1.580 0.131 1.662 sum -2.307 -3.445 -1.014 4.269 Atomic orbital electron populations 1.20742 0.88928 1.03336 1.03002 1.21163 0.96542 0.87655 0.92775 1.21995 0.95255 0.98856 1.05555 1.23986 0.94926 1.01242 0.85899 1.21079 0.95302 0.94209 1.10603 1.17864 0.86133 0.82412 0.78698 1.90716 1.71551 1.34952 1.46091 1.48128 1.06735 1.18531 1.58238 1.20251 0.94289 0.80870 0.95833 1.21524 1.36659 0.96644 1.03313 0.91230 1.25008 0.94602 0.98333 0.95710 1.69919 1.34642 1.23992 1.23194 0.86581 0.78797 0.80777 0.81683 1.19865 1.20967 1.19798 1.20827 0.80368 1.00031 0.95113 1.22114 1.00574 1.02758 0.96178 1.22192 0.98250 1.01269 0.99829 1.19081 0.86273 0.84623 0.92590 1.84768 1.76762 1.32664 1.32808 1.66978 1.09291 1.30406 1.17638 0.90431 0.90677 0.90435 0.84336 0.76844 0.94267 0.92324 0.92044 0.89730 0.91332 0.92263 0.93125 0.93011 0.93415 0.89874 0.74929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.16 36.01 0.37 -0.85 16 2 C 0.16 2.57 6.78 -82.52 -0.56 2.01 16 3 C -0.20 -3.42 9.71 -39.50 -0.38 -3.81 16 4 C -0.04 -0.74 7.62 -38.89 -0.30 -1.04 16 5 C -0.21 -4.28 5.62 -104.69 -0.59 -4.87 16 6 C 0.56 12.35 7.38 -12.48 -0.09 12.26 16 7 O -0.55 -13.18 15.11 -13.91 -0.21 -13.39 16 8 N -0.59 -12.22 2.43 -168.70 -0.41 -12.63 16 9 C 0.21 4.58 4.38 -5.20 -0.02 4.55 16 10 C -0.54 -12.77 5.67 -34.45 -0.20 -12.97 16 11 H 0.07 1.69 6.91 -52.48 -0.36 1.33 16 12 C 0.07 1.63 5.29 -17.82 -0.09 1.54 16 13 N -0.88 -21.76 13.29 55.43 0.74 -21.02 16 14 Si 0.89 19.02 29.54 -169.99 -5.02 14.00 16 15 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 16 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 18 C 0.14 2.59 3.23 -67.93 -0.22 2.37 16 19 C -0.16 -2.52 9.03 37.16 0.34 -2.18 16 20 C -0.16 -2.81 8.21 37.15 0.31 -2.51 16 21 C 0.35 6.98 7.74 -16.61 -0.13 6.85 16 22 O -0.46 -8.57 12.06 -37.15 -0.45 -9.02 16 23 N -0.52 -9.68 10.28 -9.21 -0.09 -9.78 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.08 0.76 8.07 -51.93 -0.42 0.35 16 27 H 0.14 2.11 8.06 -52.49 -0.42 1.69 16 28 H 0.22 4.75 3.03 -52.49 -0.16 4.59 16 29 H 0.04 0.91 6.25 -51.92 -0.32 0.58 16 30 H 0.06 1.35 4.06 -51.95 -0.21 1.13 16 31 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 32 H 0.08 1.61 6.96 -51.93 -0.36 1.25 16 33 H 0.07 1.17 6.60 -51.93 -0.34 0.82 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.98 8.09 -51.93 -0.42 0.56 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.62 6.46 -51.92 -0.34 1.29 16 39 H 0.39 5.29 9.06 45.56 0.41 5.71 16 LS Contribution 317.41 15.07 4.78 4.78 Total: -1.00 -28.55 317.41 -6.43 -34.98 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -4.19 Total: 10.70 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -1.57 Total: 1.37 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.23 Total: -43.43 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.66 Total: -22.41 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.55 -6.43 -34.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523281698.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.818 kcal (2) G-P(sol) polarization free energy of solvation -28.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds