Wall clock time and date at job start Tue Mar 31 2020 00:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38352 * 119.40396 * 2 1 4 4 C 1.38338 * 119.45640 * 179.72969 * 3 2 1 5 5 C 1.39996 * 118.34732 * 0.52847 * 4 3 2 6 6 C 1.47523 * 120.59544 * 179.71222 * 5 4 3 7 7 O 1.21593 * 119.99429 * 150.81621 * 6 5 4 8 8 N 1.34768 * 120.00371 * 330.81342 * 6 5 4 9 9 C 1.46501 * 119.99751 * 6.76621 * 8 6 5 10 10 C 1.50692 * 109.47829 * 97.21845 * 9 8 6 11 11 H 1.08007 * 119.99447 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00761 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99753 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00430 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47251 * 59.99927 * 14 12 10 16 16 H 1.48504 * 109.47242 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47262 * 299.99846 * 14 12 10 18 18 C 1.46501 * 120.00330 * 186.75716 * 8 6 5 19 19 C 1.53004 * 109.46949 * 125.22874 * 18 8 6 20 20 C 1.52992 * 109.47304 * 245.23041 * 18 8 6 21 21 C 1.40280 * 118.80574 * 359.73549 * 5 4 3 22 22 O 1.35423 * 119.80096 * 180.02562 * 21 5 4 23 23 N 1.31882 * 119.40682 * 180.26980 * 2 1 3 24 24 H 1.08996 * 109.46955 * 269.72902 * 1 2 3 25 25 H 1.09004 * 109.46963 * 149.72944 * 1 2 3 26 26 H 1.08997 * 109.46792 * 29.73174 * 1 2 3 27 27 H 1.07998 * 120.27595 * 359.97438 * 3 2 1 28 28 H 1.07994 * 120.83023 * 180.24205 * 4 3 2 29 29 H 1.09008 * 109.47078 * 217.22229 * 9 8 6 30 30 H 1.09003 * 109.47394 * 337.21004 * 9 8 6 31 31 H 0.97003 * 120.00479 * 180.02562 * 13 12 10 32 32 H 1.08996 * 109.46907 * 5.23503 * 18 8 6 33 33 H 1.09003 * 109.46754 * 60.00181 * 19 18 8 34 34 H 1.08995 * 109.47055 * 180.02562 * 19 18 8 35 35 H 1.08996 * 109.47129 * 300.00590 * 19 18 8 36 36 H 1.09000 * 109.47714 * 60.00036 * 20 18 8 37 37 H 1.09000 * 109.47155 * 180.02562 * 20 18 8 38 38 H 1.09009 * 109.47276 * 299.99866 * 20 18 8 39 39 H 0.96692 * 113.99956 * 269.97378 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 0.0057 5 6 4.2356 -0.0249 -0.0001 6 6 5.7097 -0.0814 -0.0008 7 8 6.2821 -1.0257 0.5082 8 7 6.4220 0.9136 -0.5657 9 6 5.7426 2.1193 -1.0461 10 6 5.8337 3.1986 0.0016 11 1 6.3462 3.0055 0.9325 12 6 5.2631 4.4325 -0.2281 13 7 4.6395 4.6678 -1.3619 14 14 5.3755 5.7701 1.0710 15 1 6.8027 6.0796 1.3407 16 1 4.6880 6.9928 0.5834 17 1 4.7258 5.3016 2.3214 18 6 7.8756 0.7895 -0.6992 19 6 8.2729 0.9960 -2.1622 20 6 8.5597 1.8471 0.1692 21 6 3.4758 -1.2041 -0.0057 22 8 4.0992 -2.4063 -0.0108 23 7 2.1546 -1.1489 -0.0054 24 1 -0.3633 -0.0049 1.0276 25 1 -0.3633 -0.8876 -0.5181 26 1 -0.3633 0.8924 -0.5097 27 1 1.6411 2.1375 -0.0004 28 1 4.1223 2.1344 0.0097 29 1 6.2187 2.4632 -1.9644 30 1 4.6950 1.8920 -1.2434 31 1 4.2383 5.5360 -1.5237 32 1 8.1867 -0.2036 -0.3750 33 1 7.9617 1.9890 -2.4865 34 1 9.3543 0.9032 -2.2617 35 1 7.7855 0.2425 -2.7809 36 1 8.2767 1.7001 1.2115 37 1 9.6412 1.7551 0.0695 38 1 8.2485 2.8403 -0.1551 39 1 4.2802 -2.7517 -0.8956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523281698.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:54 Heat of formation + Delta-G solvation = -42.290414 kcal Electronic energy + Delta-G solvation = -22623.448689 eV Core-core repulsion = 19338.570586 eV Total energy + Delta-G solvation = -3284.878103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.01571 -40.30049 -38.39768 -37.36841 -35.37683 -34.23484 -32.53066 -32.31624 -29.52218 -28.61478 -28.07064 -25.03450 -24.70013 -23.74387 -22.43610 -20.30893 -19.50322 -18.64033 -18.29730 -17.80966 -17.22629 -16.54378 -16.40375 -15.83537 -15.64170 -15.09295 -14.84670 -14.83086 -14.43136 -14.21975 -13.90188 -13.54329 -13.36898 -13.17459 -12.97158 -12.92515 -12.78551 -12.74167 -12.61575 -12.34089 -12.18749 -11.91233 -11.67666 -11.44333 -11.08314 -10.81937 -10.51072 -10.17998 -9.83453 -9.43401 -8.21778 -6.35246 -0.33856 0.18281 1.43436 1.46829 1.52261 1.81970 2.17086 2.39969 2.52794 2.75866 3.06486 3.53776 3.75157 3.96615 4.05709 4.08102 4.26603 4.38765 4.43665 4.52791 4.69062 4.81895 4.82648 4.86375 4.89890 5.00766 5.06558 5.10282 5.15318 5.20530 5.32125 5.41378 5.52226 5.61781 5.69828 5.85390 6.01873 6.51043 6.57071 6.78852 6.84582 7.23879 7.37117 8.81654 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.008376 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.219577 B = 3342.103940 C = 4936.139716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.164 3.836 3 C -0.197 4.197 4 C -0.050 4.050 5 C -0.231 4.231 6 C 0.556 3.444 7 O -0.579 6.579 8 N -0.585 5.585 9 C 0.221 3.779 10 C -0.543 4.543 11 H 0.056 0.944 12 C 0.038 3.962 13 N -0.902 5.902 14 Si 0.944 3.056 15 H -0.275 1.275 16 H -0.279 1.279 17 H -0.274 1.274 18 C 0.130 3.870 19 C -0.148 4.148 20 C -0.148 4.148 21 C 0.352 3.648 22 O -0.476 6.476 23 N -0.530 5.530 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.162 0.838 28 H 0.195 0.805 29 H 0.027 0.973 30 H 0.055 0.945 31 H 0.272 0.728 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.033 0.967 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.570 -3.728 -1.942 5.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.026 3.974 3 C -0.216 4.216 4 C -0.075 4.075 5 C -0.238 4.238 6 C 0.345 3.655 7 O -0.462 6.462 8 N -0.315 5.315 9 C 0.101 3.899 10 C -0.581 4.581 11 H 0.075 0.925 12 C -0.165 4.165 13 N -0.540 5.540 14 Si 0.770 3.230 15 H -0.200 1.200 16 H -0.205 1.205 17 H -0.199 1.199 18 C 0.027 3.973 19 C -0.206 4.206 20 C -0.206 4.206 21 C 0.172 3.828 22 O -0.284 6.284 23 N -0.251 5.251 24 H 0.114 0.886 25 H 0.102 0.898 26 H 0.121 0.879 27 H 0.179 0.821 28 H 0.211 0.789 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -3.775 -4.814 -1.233 6.241 hybrid contribution 0.765 1.466 0.148 1.660 sum -3.010 -3.347 -1.085 4.631 Atomic orbital electron populations 1.20909 0.85102 1.05065 1.04621 1.21947 0.98816 0.86607 0.90001 1.22252 0.94155 1.00419 1.04807 1.23776 0.96312 1.00156 0.87212 1.21065 0.94690 0.95109 1.12901 1.18134 0.86874 0.82176 0.78307 1.90679 1.72233 1.35884 1.47410 1.48206 1.07760 1.17906 1.57637 1.20002 0.94036 0.80925 0.94902 1.21519 1.36378 0.97246 1.02976 0.92541 1.25487 0.94361 0.99670 0.97001 1.69980 1.35320 1.24433 1.24259 0.85816 0.78487 0.78941 0.79782 1.20047 1.20458 1.19909 1.21087 0.79176 0.99972 0.97047 1.22029 1.02587 1.01898 0.94049 1.22092 1.00272 0.99838 0.98397 1.19171 0.86792 0.84563 0.92287 1.84700 1.76855 1.32229 1.34638 1.67149 1.08530 1.31309 1.18100 0.88588 0.89777 0.87933 0.82055 0.78866 0.95524 0.92740 0.91899 0.90154 0.92676 0.89137 0.92940 0.94805 0.90090 0.91707 0.72739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.00 10.16 71.24 0.72 -1.27 16 2 C 0.16 5.04 6.78 42.58 0.29 5.33 16 3 C -0.20 -6.57 9.71 22.32 0.22 -6.35 16 4 C -0.05 -2.05 7.62 22.72 0.17 -1.87 16 5 C -0.23 -9.76 5.62 -19.91 -0.11 -9.87 16 6 C 0.56 25.06 7.38 86.69 0.64 25.70 16 7 O -0.58 -28.22 15.11 14.34 0.22 -28.00 16 8 N -0.59 -24.95 2.43 -805.91 -1.96 -26.91 16 9 C 0.22 10.00 4.38 85.63 0.37 10.38 16 10 C -0.54 -25.94 5.67 25.60 0.15 -25.80 16 11 H 0.06 2.81 6.91 -2.91 -0.02 2.79 16 12 C 0.04 1.80 5.29 84.65 0.45 2.25 16 13 N -0.90 -44.54 13.29 21.45 0.28 -44.25 16 14 Si 0.94 38.80 29.54 68.60 2.03 40.82 16 15 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 16 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 18 C 0.13 4.81 3.23 44.99 0.15 4.96 16 19 C -0.15 -4.58 9.03 71.98 0.65 -3.93 16 20 C -0.15 -5.26 8.21 71.98 0.59 -4.67 16 21 C 0.35 13.79 7.74 85.13 0.66 14.45 16 22 O -0.48 -17.52 12.06 -68.82 -0.83 -18.35 16 23 N -0.53 -18.91 10.28 -296.06 -3.04 -21.96 16 24 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 26 H 0.10 1.58 8.07 -2.39 -0.02 1.56 16 27 H 0.16 4.55 8.06 -2.91 -0.02 4.52 16 28 H 0.20 8.75 3.03 -2.91 -0.01 8.74 16 29 H 0.03 1.27 6.25 -2.38 -0.01 1.25 16 30 H 0.06 2.56 4.06 -2.41 -0.01 2.55 16 31 H 0.27 12.79 8.31 -92.71 -0.77 12.02 16 32 H 0.08 3.06 6.96 -2.39 -0.02 3.04 16 33 H 0.05 1.86 6.60 -2.39 -0.02 1.84 16 34 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.03 1.29 8.09 -2.39 -0.02 1.27 16 37 H 0.08 2.29 8.14 -2.39 -0.02 2.28 16 38 H 0.06 2.54 6.46 -2.38 -0.02 2.52 16 39 H 0.41 11.03 9.06 -74.06 -0.67 10.36 16 Total: -1.00 -61.34 317.41 2.05 -59.28 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.42 Total: 30.07 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 4.94 Total: 9.30 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -4.72 Total: -93.12 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -0.61 Total: -46.35 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.82 kcal Total: -61.34 2.05 -59.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523281698.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.991 kcal (2) G-P(sol) polarization free energy of solvation -61.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds