Wall clock time and date at job start Tue Mar 31 2020 00:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38020 * 119.51646 * 2 1 4 4 C 1.39930 * 119.13102 * 179.72864 * 3 2 1 5 5 C 1.48155 * 120.89391 * 180.27373 * 4 3 2 6 6 O 1.21514 * 120.00184 * 318.02345 * 5 4 3 7 7 N 1.34771 * 120.00323 * 138.02438 * 5 4 3 8 8 C 1.46499 * 120.00418 * 210.21448 * 7 5 4 9 9 C 1.50698 * 109.47129 * 89.99748 * 8 7 5 10 10 H 1.07996 * 120.00145 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00082 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00245 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99979 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47264 * 60.00308 * 13 11 9 15 15 H 1.48497 * 109.47171 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47389 * 300.00636 * 13 11 9 17 17 C 1.46504 * 119.99912 * 30.21687 * 7 5 4 18 18 C 1.53000 * 109.46938 * 303.42126 * 17 7 5 19 19 C 1.52996 * 109.47051 * 63.42062 * 17 7 5 20 20 C 1.39621 * 118.21450 * 0.48852 * 4 3 2 21 21 C 1.38851 * 118.94879 * 359.50903 * 20 4 3 22 22 O 1.35686 * 119.62011 * 180.27466 * 21 20 4 23 23 N 1.31885 * 119.50459 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.47025 * 270.03062 * 1 2 3 25 25 H 1.09004 * 109.46797 * 30.02377 * 1 2 3 26 26 H 1.08997 * 109.47549 * 150.02318 * 1 2 3 27 27 H 1.07994 * 120.43456 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.47854 * 210.00022 * 8 7 5 29 29 H 1.09000 * 109.47107 * 330.00197 * 8 7 5 30 30 H 0.96997 * 119.99859 * 179.97438 * 12 11 9 31 31 H 1.09000 * 109.47448 * 183.41917 * 17 7 5 32 32 H 1.08998 * 109.47114 * 13.42346 * 18 17 7 33 33 H 1.08993 * 109.47391 * 133.43284 * 18 17 7 34 34 H 1.09004 * 109.46752 * 253.42757 * 18 17 7 35 35 H 1.08993 * 109.47468 * 100.91525 * 19 17 7 36 36 H 1.09008 * 109.46947 * 220.91659 * 19 17 7 37 37 H 1.09002 * 109.47421 * 340.90950 * 19 17 7 38 38 H 1.07998 * 120.52560 * 179.79145 * 20 4 3 39 39 H 0.96705 * 113.99537 * 90.00588 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.2011 0.0000 4 6 3.5862 1.1917 0.0058 5 6 4.3555 2.4579 0.0121 6 8 4.0052 3.3851 -0.6909 7 7 5.4436 2.5814 0.7975 8 6 5.8144 3.8930 1.3345 9 6 5.1406 4.0991 2.6666 10 1 4.5006 3.3299 3.0728 11 6 5.3420 5.2693 3.3674 12 7 6.1218 6.2059 2.8731 13 14 4.5073 5.5245 5.0189 14 1 4.9409 4.4625 5.9620 15 1 4.8830 6.8540 5.5633 16 1 3.0340 5.4599 4.8443 17 6 6.2559 1.4040 1.1142 18 6 5.3735 0.3349 1.7618 19 6 6.8707 0.8477 -0.1716 20 6 4.2381 -0.0430 0.0009 21 6 3.4774 -1.2046 0.0009 22 8 4.0967 -2.4119 0.0018 23 7 2.1565 -1.1478 0.0005 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5134 27 1 1.6462 2.1359 -0.0004 28 1 6.8957 3.9407 1.4631 29 1 5.4962 4.6723 0.6420 30 1 6.2632 7.0293 3.3659 31 1 7.0509 1.6860 1.8046 32 1 4.3246 0.5952 1.6206 33 1 5.5738 -0.6310 1.2984 34 1 5.5937 0.2791 2.8279 35 1 7.9104 1.1664 -0.2447 36 1 6.8247 -0.2413 -0.1547 37 1 6.3147 1.2214 -1.0315 38 1 5.3169 -0.0938 0.0017 39 1 4.2756 -2.7614 0.8855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000537482627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:58 Heat of formation + Delta-G solvation = 37.381704 kcal Electronic energy + Delta-G solvation = -22576.258683 eV Core-core repulsion = 19294.835422 eV Total energy + Delta-G solvation = -3281.423260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.53527 -39.06662 -37.23619 -36.56836 -33.94319 -32.50823 -31.52758 -31.21404 -27.87493 -27.33278 -26.67108 -24.56037 -22.92611 -22.19891 -21.89516 -19.12216 -17.74141 -17.07884 -16.70997 -16.55349 -16.01990 -15.49500 -15.13670 -14.58442 -14.22944 -14.17174 -14.07993 -13.52062 -13.18445 -12.98177 -12.46418 -12.36820 -12.32275 -12.03497 -11.79594 -11.69659 -11.46935 -11.32255 -11.16267 -10.96094 -10.76448 -10.50508 -10.23060 -9.84542 -9.66669 -9.33160 -9.07128 -8.53942 -8.31410 -7.75871 -6.14726 -4.21812 0.95125 1.06839 2.99490 3.24028 3.29396 3.31014 3.47753 3.70206 3.79229 4.33717 4.52930 4.69106 4.86160 4.97255 5.03332 5.16052 5.18878 5.27847 5.33792 5.52007 5.54021 5.57799 5.64997 5.73464 5.74554 5.93405 5.97644 6.09073 6.16112 6.23392 6.38736 6.49356 6.96278 7.30790 7.42939 7.44580 7.81679 7.94773 8.10077 8.21750 8.62802 8.86071 9.44269 10.92636 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.005914 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.245246 B = 4733.354996 C = 5288.926427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.129 3.871 3 C -0.124 4.124 4 C -0.082 4.082 5 C 0.569 3.431 6 O -0.522 6.522 7 N -0.601 5.601 8 C 0.247 3.753 9 C -0.538 4.538 10 H 0.058 0.942 11 C 0.064 3.936 12 N -0.891 5.891 13 Si 0.898 3.102 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.276 1.276 17 C 0.135 3.865 18 C -0.201 4.201 19 C -0.180 4.180 20 C -0.157 4.157 21 C 0.270 3.730 22 O -0.479 6.479 23 N -0.489 5.489 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.145 0.855 28 H 0.035 0.965 29 H 0.047 0.953 30 H 0.266 0.734 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.188 0.812 39 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.170 -14.502 -2.855 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.010 4.010 3 C -0.145 4.145 4 C -0.093 4.093 5 C 0.355 3.645 6 O -0.398 6.398 7 N -0.333 5.333 8 C 0.129 3.871 9 C -0.576 4.576 10 H 0.076 0.924 11 C -0.139 4.139 12 N -0.529 5.529 13 Si 0.725 3.275 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.201 1.201 17 C 0.030 3.970 18 C -0.257 4.257 19 C -0.238 4.238 20 C -0.177 4.177 21 C 0.092 3.908 22 O -0.285 6.285 23 N -0.209 5.209 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.163 0.837 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.204 0.796 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.676 -14.514 -3.791 15.445 hybrid contribution 0.151 0.793 1.667 1.852 sum -3.525 -13.722 -2.125 14.326 Atomic orbital electron populations 1.20698 0.88321 1.03526 1.03187 1.20820 0.96741 0.86685 0.96782 1.22022 0.93202 0.99930 0.99314 1.20636 0.94615 0.94487 0.99561 1.17885 0.80891 0.85873 0.79816 1.90728 1.69479 1.41315 1.38238 1.48080 1.25440 1.10692 1.49130 1.19395 0.96254 0.77613 0.93842 1.21448 1.29683 1.02514 1.03984 0.92380 1.24935 0.95155 0.95576 0.98209 1.69921 1.37008 1.07256 1.38709 0.86561 0.80007 0.77406 0.83490 1.20179 1.21042 1.20146 1.21049 0.93927 0.85988 0.95995 1.23726 1.02550 0.98094 1.01369 1.22704 1.02457 1.00359 0.98276 1.23921 1.05348 0.91493 0.96948 1.18808 0.86758 0.84927 1.00259 1.84825 1.77125 1.33009 1.33561 1.66709 1.10145 1.30826 1.13183 0.90337 0.90394 0.90516 0.83721 0.94667 0.93509 0.92477 0.88089 0.89272 0.91226 0.92041 0.91164 0.91113 0.91748 0.79562 0.75019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.16 36.01 0.37 -0.68 16 2 C 0.13 1.84 6.78 -82.65 -0.56 1.28 16 3 C -0.12 -1.98 9.41 -39.03 -0.37 -2.35 16 4 C -0.08 -1.41 4.18 -104.68 -0.44 -1.85 16 5 C 0.57 11.96 6.01 -12.19 -0.07 11.89 16 6 O -0.52 -12.81 16.77 5.35 0.09 -12.72 16 7 N -0.60 -12.40 2.38 -168.47 -0.40 -12.80 16 8 C 0.25 6.24 5.31 -5.20 -0.03 6.21 16 9 C -0.54 -14.54 9.39 -34.44 -0.32 -14.87 16 10 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 13 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 C 0.14 2.13 3.27 -67.93 -0.22 1.90 16 18 C -0.20 -2.74 7.71 37.16 0.29 -2.45 16 19 C -0.18 -2.30 8.31 37.16 0.31 -2.00 16 20 C -0.16 -2.28 4.82 -38.84 -0.19 -2.47 16 21 C 0.27 3.82 7.56 -17.16 -0.13 3.69 16 22 O -0.48 -5.57 13.45 -18.76 -0.25 -5.82 16 23 N -0.49 -7.35 10.27 -9.59 -0.10 -7.45 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.14 2.25 8.06 -52.49 -0.42 1.82 16 28 H 0.04 0.90 7.95 -51.93 -0.41 0.48 16 29 H 0.05 1.34 7.34 -51.93 -0.38 0.95 16 30 H 0.27 7.23 8.31 -40.82 -0.34 6.90 16 31 H 0.10 1.60 7.82 -51.93 -0.41 1.19 16 32 H 0.09 1.41 3.89 -61.66 -0.24 1.17 16 33 H 0.07 0.73 5.12 -51.93 -0.27 0.47 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.71 6.28 -51.92 -0.33 0.38 16 37 H 0.06 0.93 6.79 -51.93 -0.35 0.58 16 38 H 0.19 2.42 1.26 -52.54 -0.07 2.35 16 39 H 0.39 2.64 9.06 45.56 0.41 3.05 16 LS Contribution 315.70 15.07 4.76 4.76 Total: -1.00 -33.11 315.70 -5.77 -38.87 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -4.12 Total: 4.04 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -1.46 Total: -0.03 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.24 Total: -45.14 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.16 Total: -18.54 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.11 -5.77 -38.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537482627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.256 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds