Wall clock time and date at job start Tue Mar 31 2020 00:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38020 * 119.51646 * 2 1 4 4 C 1.39930 * 119.13102 * 179.72864 * 3 2 1 5 5 C 1.48155 * 120.89391 * 180.27373 * 4 3 2 6 6 O 1.21514 * 120.00184 * 318.02345 * 5 4 3 7 7 N 1.34771 * 120.00323 * 138.02438 * 5 4 3 8 8 C 1.46499 * 120.00418 * 210.21448 * 7 5 4 9 9 C 1.50698 * 109.47129 * 89.99748 * 8 7 5 10 10 H 1.07996 * 120.00145 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00082 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00245 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99979 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47264 * 60.00308 * 13 11 9 15 15 H 1.48497 * 109.47171 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47389 * 300.00636 * 13 11 9 17 17 C 1.46504 * 119.99912 * 30.21687 * 7 5 4 18 18 C 1.53000 * 109.46938 * 303.42126 * 17 7 5 19 19 C 1.52996 * 109.47051 * 63.42062 * 17 7 5 20 20 C 1.39621 * 118.21450 * 0.48852 * 4 3 2 21 21 C 1.38851 * 118.94879 * 359.50903 * 20 4 3 22 22 O 1.35686 * 119.62011 * 180.27466 * 21 20 4 23 23 N 1.31885 * 119.50459 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.47025 * 270.03062 * 1 2 3 25 25 H 1.09004 * 109.46797 * 30.02377 * 1 2 3 26 26 H 1.08997 * 109.47549 * 150.02318 * 1 2 3 27 27 H 1.07994 * 120.43456 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.47854 * 210.00022 * 8 7 5 29 29 H 1.09000 * 109.47107 * 330.00197 * 8 7 5 30 30 H 0.96997 * 119.99859 * 179.97438 * 12 11 9 31 31 H 1.09000 * 109.47448 * 183.41917 * 17 7 5 32 32 H 1.08998 * 109.47114 * 13.42346 * 18 17 7 33 33 H 1.08993 * 109.47391 * 133.43284 * 18 17 7 34 34 H 1.09004 * 109.46752 * 253.42757 * 18 17 7 35 35 H 1.08993 * 109.47468 * 100.91525 * 19 17 7 36 36 H 1.09008 * 109.46947 * 220.91659 * 19 17 7 37 37 H 1.09002 * 109.47421 * 340.90950 * 19 17 7 38 38 H 1.07998 * 120.52560 * 179.79145 * 20 4 3 39 39 H 0.96705 * 113.99537 * 90.00588 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.2011 0.0000 4 6 3.5862 1.1917 0.0058 5 6 4.3555 2.4579 0.0121 6 8 4.0052 3.3851 -0.6909 7 7 5.4436 2.5814 0.7975 8 6 5.8144 3.8930 1.3345 9 6 5.1406 4.0991 2.6666 10 1 4.5006 3.3299 3.0728 11 6 5.3420 5.2693 3.3674 12 7 6.1218 6.2059 2.8731 13 14 4.5073 5.5245 5.0189 14 1 4.9409 4.4625 5.9620 15 1 4.8830 6.8540 5.5633 16 1 3.0340 5.4599 4.8443 17 6 6.2559 1.4040 1.1142 18 6 5.3735 0.3349 1.7618 19 6 6.8707 0.8477 -0.1716 20 6 4.2381 -0.0430 0.0009 21 6 3.4774 -1.2046 0.0009 22 8 4.0967 -2.4119 0.0018 23 7 2.1565 -1.1478 0.0005 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5134 27 1 1.6462 2.1359 -0.0004 28 1 6.8957 3.9407 1.4631 29 1 5.4962 4.6723 0.6420 30 1 6.2632 7.0293 3.3659 31 1 7.0509 1.6860 1.8046 32 1 4.3246 0.5952 1.6206 33 1 5.5738 -0.6310 1.2984 34 1 5.5937 0.2791 2.8279 35 1 7.9104 1.1664 -0.2447 36 1 6.8247 -0.2413 -0.1547 37 1 6.3147 1.2214 -1.0315 38 1 5.3169 -0.0938 0.0017 39 1 4.2756 -2.7614 0.8855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000537482627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:57 Heat of formation + Delta-G solvation = 11.675664 kcal Electronic energy + Delta-G solvation = -22577.373380 eV Core-core repulsion = 19294.835422 eV Total energy + Delta-G solvation = -3282.537958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.79573 -40.46628 -38.35924 -37.94117 -35.69423 -34.19504 -32.79253 -32.46968 -29.42302 -28.76612 -27.73757 -26.18140 -24.31407 -23.69297 -23.20601 -20.31977 -19.01426 -18.69702 -18.29900 -17.97853 -17.21716 -17.06603 -16.56542 -16.11979 -15.96064 -15.40154 -15.23397 -14.72486 -14.47245 -14.16413 -13.98591 -13.74750 -13.60196 -13.25297 -13.24047 -12.89577 -12.81072 -12.66400 -12.62937 -12.52859 -12.26049 -12.13075 -11.76331 -11.74888 -11.19821 -10.68393 -10.59671 -10.35862 -9.49516 -9.39828 -8.25426 -6.42142 -0.30857 -0.03726 1.36130 1.39313 1.45461 1.50771 2.06866 2.36750 2.49662 2.64520 3.03990 3.28980 3.56046 3.72899 3.82795 3.86981 4.02893 4.15908 4.28782 4.40578 4.44807 4.54772 4.68705 4.74955 4.79592 4.89447 4.93113 4.94459 5.04723 5.07580 5.11792 5.16567 5.32110 5.47870 5.53411 5.80948 6.00028 6.56226 6.61279 6.66804 6.86960 7.02882 7.30302 8.81166 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.005914 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.245246 B = 4733.354996 C = 5288.926427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.133 3.867 3 C -0.140 4.140 4 C -0.099 4.099 5 C 0.564 3.436 6 O -0.574 6.574 7 N -0.605 5.605 8 C 0.262 3.738 9 C -0.549 4.549 10 H 0.058 0.942 11 C 0.012 3.988 12 N -0.926 5.926 13 Si 0.966 3.034 14 H -0.261 1.261 15 H -0.279 1.279 16 H -0.275 1.275 17 C 0.124 3.876 18 C -0.196 4.196 19 C -0.175 4.175 20 C -0.148 4.148 21 C 0.282 3.718 22 O -0.477 6.477 23 N -0.498 5.498 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.138 0.862 28 H 0.027 0.973 29 H 0.000 1.000 30 H 0.268 0.732 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.044 0.956 38 H 0.203 0.797 39 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.642 -17.512 -1.664 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.006 4.006 3 C -0.161 4.161 4 C -0.110 4.110 5 C 0.353 3.647 6 O -0.454 6.454 7 N -0.336 5.336 8 C 0.142 3.858 9 C -0.588 4.588 10 H 0.076 0.924 11 C -0.188 4.188 12 N -0.565 5.565 13 Si 0.790 3.210 14 H -0.185 1.185 15 H -0.204 1.204 16 H -0.200 1.200 17 C 0.021 3.979 18 C -0.252 4.252 19 C -0.232 4.232 20 C -0.168 4.168 21 C 0.103 3.897 22 O -0.287 6.287 23 N -0.219 5.219 24 H 0.111 0.889 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.156 0.844 28 H 0.045 0.955 29 H 0.019 0.981 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.127 0.873 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.128 0.872 37 H 0.063 0.937 38 H 0.219 0.781 39 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -4.127 -17.589 -2.575 18.249 hybrid contribution 0.345 1.668 1.258 2.118 sum -3.782 -15.921 -1.316 16.417 Atomic orbital electron populations 1.20813 0.85697 1.04636 1.04430 1.21263 0.98341 0.85674 0.95272 1.22113 0.92887 1.00700 1.00424 1.20313 0.94873 0.93552 1.02222 1.18495 0.80642 0.86860 0.78729 1.90682 1.70587 1.43654 1.40499 1.48054 1.26193 1.10625 1.48752 1.18878 0.95333 0.79159 0.92470 1.21693 1.29742 1.02793 1.04540 0.92384 1.25845 0.95664 0.95168 1.02090 1.70048 1.38291 1.07777 1.40349 0.85483 0.78675 0.77849 0.78943 1.18522 1.20447 1.20007 1.21429 0.93755 0.84926 0.97837 1.23670 1.00707 0.98887 1.01905 1.22666 1.02424 1.02585 0.95561 1.23951 1.05953 0.90469 0.96458 1.18876 0.86581 0.85546 0.98647 1.84785 1.76621 1.31519 1.35750 1.66867 1.10631 1.30839 1.13527 0.88883 0.89205 0.89492 0.84407 0.95541 0.98150 0.92264 0.88491 0.91195 0.87267 0.91503 0.90064 0.87170 0.93703 0.78094 0.72066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.86 10.16 71.24 0.72 -1.13 16 2 C 0.13 3.58 6.78 42.50 0.29 3.87 16 3 C -0.14 -4.50 9.41 22.63 0.21 -4.29 16 4 C -0.10 -3.42 4.18 -19.90 -0.08 -3.50 16 5 C 0.56 24.76 6.01 86.88 0.52 25.28 16 6 O -0.57 -30.18 16.77 -3.76 -0.06 -30.24 16 7 N -0.60 -25.84 2.38 -805.20 -1.92 -27.76 16 8 C 0.26 13.95 5.31 85.63 0.45 14.41 16 9 C -0.55 -30.55 9.39 25.60 0.24 -30.31 16 10 H 0.06 3.16 7.81 -2.91 -0.02 3.13 16 11 C 0.01 0.67 5.46 84.65 0.46 1.14 16 12 N -0.93 -54.71 13.29 21.45 0.28 -54.42 16 13 Si 0.97 43.30 29.54 68.60 2.03 45.32 16 14 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 15 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 17 C 0.12 3.79 3.27 44.99 0.15 3.93 16 18 C -0.20 -4.86 7.71 71.98 0.55 -4.30 16 19 C -0.18 -4.14 8.31 71.98 0.60 -3.55 16 20 C -0.15 -4.00 4.82 22.75 0.11 -3.89 16 21 C 0.28 7.07 7.56 84.78 0.64 7.71 16 22 O -0.48 -8.94 13.45 -90.04 -1.21 -10.15 16 23 N -0.50 -13.67 10.27 -297.15 -3.05 -16.72 16 24 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.09 1.47 8.07 -2.38 -0.02 1.45 16 26 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 28 H 0.03 1.43 7.95 -2.39 -0.02 1.41 16 29 H 0.00 0.02 7.34 -2.39 -0.02 0.00 16 30 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.10 3.02 7.82 -2.39 -0.02 3.00 16 32 H 0.07 2.11 3.89 -11.52 -0.04 2.06 16 33 H 0.11 1.81 5.12 -2.39 -0.01 1.80 16 34 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.11 1.73 6.28 -2.38 -0.01 1.72 16 37 H 0.04 1.27 6.79 -2.39 -0.02 1.25 16 38 H 0.20 4.62 1.26 -2.96 0.00 4.61 16 39 H 0.42 3.44 9.06 -74.05 -0.67 2.77 16 Total: -1.00 -75.11 315.70 1.33 -73.78 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.39 Total: 14.84 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 4.87 Total: 5.36 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -4.69 Total: -98.90 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -1.27 Total: -40.40 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -75.11 1.33 -73.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537482627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.456 kcal (2) G-P(sol) polarization free energy of solvation -75.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds