Wall clock time and date at job start Mon Mar 30 2020 23:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 120.00036 * 2 1 4 4 C 1.38212 * 119.99749 * 179.80698 * 3 2 1 5 5 C 1.38256 * 120.00114 * 0.42754 * 4 3 2 6 6 N 1.48022 * 119.99839 * 179.78594 * 5 4 3 7 7 O 1.21801 * 119.99848 * 180.02562 * 6 5 4 8 8 O 1.21795 * 120.00062 * 0.02562 * 6 5 4 9 9 C 1.38213 * 120.00017 * 359.80658 * 5 4 3 10 10 C 1.38214 * 120.00023 * 180.27821 * 2 1 3 11 11 C 1.50707 * 119.99903 * 359.97438 * 10 2 1 12 12 H 1.08999 * 109.47309 * 325.00847 * 11 10 2 13 13 C 1.53000 * 109.46668 * 85.00298 * 11 10 2 14 14 N 1.46895 * 109.47004 * 205.00206 * 11 10 2 15 15 C 1.46899 * 110.99988 * 155.00293 * 14 11 10 16 16 C 1.53000 * 109.47524 * 179.97438 * 15 14 11 17 17 C 1.50697 * 109.47482 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99705 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00240 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99804 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00227 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47364 * 89.99680 * 21 19 17 23 23 H 1.48495 * 109.47405 * 210.00051 * 21 19 17 24 24 H 1.48505 * 109.47190 * 329.99858 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.72306 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.72407 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.72387 * 1 2 3 28 28 H 1.08000 * 119.99861 * 0.02562 * 3 2 1 29 29 H 1.08005 * 119.99613 * 180.21327 * 4 3 2 30 30 H 1.07994 * 119.99919 * 179.97438 * 9 5 4 31 31 H 1.08998 * 109.47718 * 60.00239 * 13 11 10 32 32 H 1.09006 * 109.46776 * 180.02562 * 13 11 10 33 33 H 1.09002 * 109.47700 * 299.99604 * 13 11 10 34 34 H 1.00902 * 110.99922 * 278.95193 * 14 11 10 35 35 H 1.09001 * 109.47253 * 300.00377 * 15 14 11 36 36 H 1.08999 * 109.47312 * 59.99896 * 15 14 11 37 37 H 1.08996 * 109.46803 * 300.00325 * 16 15 14 38 38 H 1.08999 * 109.46830 * 59.99700 * 16 15 14 39 39 H 0.96999 * 119.99627 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0040 5 6 4.2717 0.0000 -0.0009 6 7 5.7519 0.0000 -0.0013 7 8 6.3609 -1.0548 -0.0061 8 8 6.3609 1.0548 0.0031 9 6 3.5806 -1.1970 -0.0058 10 6 2.1981 -1.1969 -0.0058 11 6 1.4446 -2.5021 -0.0116 12 1 0.5340 -2.3985 0.5786 13 6 1.0802 -2.8742 -1.4502 14 7 2.2870 -3.5564 0.5686 15 6 1.4658 -4.6405 1.1238 16 6 2.3762 -5.7176 1.7169 17 6 1.5338 -6.8300 2.2859 18 1 0.4567 -6.7742 2.2304 19 6 2.1380 -7.9186 2.8783 20 7 3.4497 -7.9863 2.9463 21 14 1.0938 -9.2972 3.5842 22 1 0.8472 -10.3185 2.5348 23 1 1.8069 -9.9232 4.7264 24 1 -0.2031 -8.7457 4.0526 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3633 -0.8875 -0.5181 27 1 -0.3633 0.8925 -0.5096 28 1 1.6583 2.1326 0.0004 29 1 4.1204 2.1326 0.0075 30 1 4.1206 -2.1322 -0.0100 31 1 1.9907 -2.9777 -2.0405 32 1 0.5348 -3.8179 -1.4544 33 1 0.4551 -2.0919 -1.8808 34 1 2.9421 -3.9112 -0.1119 35 1 0.8174 -4.2421 1.9042 36 1 0.8560 -5.0763 0.3323 37 1 3.0242 -6.1159 0.9362 38 1 2.9863 -5.2821 2.5083 39 1 3.8748 -8.7520 3.3634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541569822.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:56 Heat of formation + Delta-G solvation = 5.600216 kcal Electronic energy + Delta-G solvation = -21114.708257 eV Core-core repulsion = 17831.906848 eV Total energy + Delta-G solvation = -3282.801409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.12236 -40.16949 -36.89678 -36.46779 -33.95169 -33.23884 -31.80957 -29.92526 -28.77942 -27.93876 -25.20254 -24.48490 -23.78485 -21.88971 -20.86115 -20.68917 -18.81320 -18.53969 -17.45527 -16.48972 -15.95776 -15.90593 -15.38832 -14.68752 -14.47791 -14.31047 -14.17446 -13.97612 -13.17775 -12.72243 -12.69521 -12.46214 -12.35667 -12.22553 -12.09508 -11.61313 -11.45122 -11.23433 -11.14324 -11.07172 -10.99782 -10.94921 -10.57117 -10.12848 -9.50898 -9.46705 -9.24304 -9.13920 -8.39668 -8.04625 -6.02938 -4.06420 -0.16902 0.84472 1.32424 1.45588 3.12136 3.29375 3.36081 3.38522 4.15506 4.22550 4.37790 4.43591 4.49895 4.62160 4.86830 5.02284 5.06578 5.10496 5.20958 5.24197 5.33032 5.40045 5.51164 5.59139 5.69075 5.74229 5.81694 5.94267 6.13144 6.18302 6.22201 6.30235 6.48380 6.86649 7.29962 7.61732 7.69593 7.69978 7.83061 8.01512 8.37262 9.00654 9.57762 11.08329 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018967 B = 0.003840 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.872187 B = 7289.778959 C = 8402.557693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.033 4.033 3 C -0.123 4.123 4 C -0.061 4.061 5 C -0.053 4.053 6 N 0.031 4.969 7 O -0.154 6.154 8 O -0.174 6.174 9 C -0.025 4.025 10 C -0.063 4.063 11 C 0.118 3.882 12 H 0.095 0.905 13 C -0.180 4.180 14 N -0.687 5.687 15 C 0.068 3.932 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.054 0.946 19 C 0.059 3.941 20 N -0.891 5.891 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.143 0.857 29 H 0.149 0.851 30 H 0.160 0.840 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.340 0.660 35 H 0.059 0.941 36 H 0.020 0.980 37 H 0.015 0.985 38 H 0.026 0.974 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.899 18.969 -8.980 21.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.034 4.034 3 C -0.142 4.142 4 C -0.080 4.080 5 C -0.136 4.136 6 N 0.549 4.451 7 O -0.372 6.372 8 O -0.387 6.387 9 C -0.044 4.044 10 C -0.065 4.065 11 C 0.007 3.993 12 H 0.113 0.887 13 C -0.238 4.238 14 N -0.318 5.318 15 C -0.060 4.060 16 C -0.013 4.013 17 C -0.563 4.563 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.530 5.530 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.161 0.839 29 H 0.166 0.834 30 H 0.178 0.822 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.159 0.841 35 H 0.078 0.922 36 H 0.038 0.962 37 H 0.033 0.967 38 H 0.044 0.956 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.388 19.180 -8.296 21.852 hybrid contribution -0.286 -1.215 -0.333 1.292 sum -6.674 17.965 -8.629 21.017 Atomic orbital electron populations 1.21037 0.89957 1.03848 1.03613 1.20218 0.97189 0.92303 0.93652 1.20979 0.92414 0.98467 1.02349 1.20955 0.94686 0.96904 0.95498 1.21125 0.79121 0.97087 1.16283 1.43646 1.03752 1.00383 0.97312 1.94586 1.69100 1.20510 1.52972 1.94496 1.69258 1.20853 1.54083 1.20961 0.94314 0.97301 0.91852 1.19861 0.92176 0.95347 0.99108 1.20481 0.95413 0.88787 0.94616 0.88745 1.22524 1.02306 1.02315 0.96693 1.60724 1.18759 1.13854 1.38433 1.22208 0.95991 0.90823 0.96991 1.19073 0.94600 0.91377 0.96246 1.21129 0.92948 1.04119 1.38119 0.92786 1.25000 0.94902 0.98327 0.96050 1.69971 1.08386 1.30308 1.44302 0.86592 0.80355 0.82258 0.78765 1.20687 1.21153 1.19911 0.89751 0.90202 0.90703 0.83882 0.83359 0.82249 0.92154 0.91318 0.92110 0.84122 0.92219 0.96186 0.96680 0.95588 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 9.22 36.01 0.33 -0.51 16 2 C -0.03 -0.30 5.88 -104.62 -0.62 -0.92 16 3 C -0.12 -1.02 9.70 -39.58 -0.38 -1.40 16 4 C -0.06 -0.62 9.56 -39.58 -0.38 -1.00 16 5 C -0.05 -0.70 6.85 -79.95 -0.55 -1.25 16 6 N 0.03 0.47 4.45 33.96 0.15 0.62 16 7 O -0.15 -2.60 18.45 -29.46 -0.54 -3.15 16 8 O -0.17 -2.66 18.45 -29.46 -0.54 -3.21 16 9 C -0.03 -0.33 8.83 -39.59 -0.35 -0.68 16 10 C -0.06 -0.73 5.06 -104.62 -0.53 -1.26 16 11 C 0.12 1.43 2.10 -68.86 -0.14 1.29 16 12 H 0.09 1.12 6.65 -51.93 -0.35 0.77 16 13 C -0.18 -1.87 8.95 37.16 0.33 -1.54 16 14 N -0.69 -10.99 5.25 -107.95 -0.57 -11.55 16 15 C 0.07 1.31 5.42 -3.82 -0.02 1.29 16 16 C 0.02 0.62 5.23 -27.88 -0.15 0.47 16 17 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 21 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.52 5.43 -51.93 -0.28 0.24 16 27 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 28 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 29 H 0.15 1.27 7.61 -52.48 -0.40 0.87 16 30 H 0.16 2.28 6.44 -52.49 -0.34 1.94 16 31 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 32 H 0.07 0.77 7.45 -51.93 -0.39 0.38 16 33 H 0.06 0.51 6.91 -51.93 -0.36 0.15 16 34 H 0.34 5.32 7.90 -39.29 -0.31 5.01 16 35 H 0.06 1.16 8.06 -51.93 -0.42 0.74 16 36 H 0.02 0.37 7.44 -51.93 -0.39 -0.01 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 330.75 15.07 4.98 4.98 Total: -1.00 -31.33 330.75 -8.96 -40.29 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.30 Total: 0.37 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -2.86 Total: -18.78 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.32 Total: -36.87 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -1.09 Total: -6.35 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.33 -8.96 -40.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541569822.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.893 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds