Wall clock time and date at job start Mon Mar 30 2020 23:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 120.00036 * 2 1 4 4 C 1.38212 * 119.99749 * 179.80698 * 3 2 1 5 5 C 1.38256 * 120.00114 * 0.42754 * 4 3 2 6 6 N 1.48022 * 119.99839 * 179.78594 * 5 4 3 7 7 O 1.21801 * 119.99848 * 180.02562 * 6 5 4 8 8 O 1.21795 * 120.00062 * 0.02562 * 6 5 4 9 9 C 1.38213 * 120.00017 * 359.80658 * 5 4 3 10 10 C 1.38214 * 120.00023 * 180.27821 * 2 1 3 11 11 C 1.50707 * 119.99903 * 359.97438 * 10 2 1 12 12 H 1.08999 * 109.47309 * 325.00847 * 11 10 2 13 13 C 1.53000 * 109.46668 * 85.00298 * 11 10 2 14 14 N 1.46895 * 109.47004 * 205.00206 * 11 10 2 15 15 C 1.46899 * 110.99988 * 155.00293 * 14 11 10 16 16 C 1.53000 * 109.47524 * 179.97438 * 15 14 11 17 17 C 1.50697 * 109.47482 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99705 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00240 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99804 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00227 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47364 * 89.99680 * 21 19 17 23 23 H 1.48495 * 109.47405 * 210.00051 * 21 19 17 24 24 H 1.48505 * 109.47190 * 329.99858 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.72306 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.72407 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.72387 * 1 2 3 28 28 H 1.08000 * 119.99861 * 0.02562 * 3 2 1 29 29 H 1.08005 * 119.99613 * 180.21327 * 4 3 2 30 30 H 1.07994 * 119.99919 * 179.97438 * 9 5 4 31 31 H 1.08998 * 109.47718 * 60.00239 * 13 11 10 32 32 H 1.09006 * 109.46776 * 180.02562 * 13 11 10 33 33 H 1.09002 * 109.47700 * 299.99604 * 13 11 10 34 34 H 1.00902 * 110.99922 * 278.95193 * 14 11 10 35 35 H 1.09001 * 109.47253 * 300.00377 * 15 14 11 36 36 H 1.08999 * 109.47312 * 59.99896 * 15 14 11 37 37 H 1.08996 * 109.46803 * 300.00325 * 16 15 14 38 38 H 1.08999 * 109.46830 * 59.99700 * 16 15 14 39 39 H 0.96999 * 119.99627 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0040 5 6 4.2717 0.0000 -0.0009 6 7 5.7519 0.0000 -0.0013 7 8 6.3609 -1.0548 -0.0061 8 8 6.3609 1.0548 0.0031 9 6 3.5806 -1.1970 -0.0058 10 6 2.1981 -1.1969 -0.0058 11 6 1.4446 -2.5021 -0.0116 12 1 0.5340 -2.3985 0.5786 13 6 1.0802 -2.8742 -1.4502 14 7 2.2870 -3.5564 0.5686 15 6 1.4658 -4.6405 1.1238 16 6 2.3762 -5.7176 1.7169 17 6 1.5338 -6.8300 2.2859 18 1 0.4567 -6.7742 2.2304 19 6 2.1380 -7.9186 2.8783 20 7 3.4497 -7.9863 2.9463 21 14 1.0938 -9.2972 3.5842 22 1 0.8472 -10.3185 2.5348 23 1 1.8069 -9.9232 4.7264 24 1 -0.2031 -8.7457 4.0526 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3633 -0.8875 -0.5181 27 1 -0.3633 0.8925 -0.5096 28 1 1.6583 2.1326 0.0004 29 1 4.1204 2.1326 0.0075 30 1 4.1206 -2.1322 -0.0100 31 1 1.9907 -2.9777 -2.0405 32 1 0.5348 -3.8179 -1.4544 33 1 0.4551 -2.0919 -1.8808 34 1 2.9421 -3.9112 -0.1119 35 1 0.8174 -4.2421 1.9042 36 1 0.8560 -5.0763 0.3323 37 1 3.0242 -6.1159 0.9362 38 1 2.9863 -5.2821 2.5083 39 1 3.8748 -8.7520 3.3634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541569822.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:55 Heat of formation + Delta-G solvation = -12.694250 kcal Electronic energy + Delta-G solvation = -21115.501564 eV Core-core repulsion = 17831.906848 eV Total energy + Delta-G solvation = -3283.594717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.25265 -41.06161 -38.08674 -37.66740 -35.50428 -34.46989 -33.21243 -31.13316 -29.67357 -29.35705 -26.26314 -26.00296 -24.87663 -23.01288 -22.29792 -21.86435 -19.88019 -19.68287 -18.61043 -18.51836 -16.97613 -16.81505 -16.62799 -16.29860 -15.79693 -15.24989 -15.08353 -14.94933 -14.35461 -14.20195 -13.92631 -13.43951 -13.25527 -13.15159 -13.06295 -12.90562 -12.85849 -12.75910 -12.51738 -12.42671 -12.32585 -12.19466 -12.00402 -11.92200 -11.41003 -11.25317 -10.57769 -10.25802 -10.06429 -9.35420 -8.20671 -6.32778 -1.22032 0.02158 0.31197 0.42482 1.40179 1.41809 1.52790 2.28299 2.39944 3.13201 3.15348 3.36338 3.52979 3.71489 3.85840 3.93296 4.15320 4.21302 4.24099 4.49863 4.54975 4.60819 4.64192 4.74149 4.79985 4.83234 4.90113 4.94661 5.05462 5.12757 5.14893 5.26401 5.35136 5.45028 5.58901 5.65660 5.78009 6.10583 6.24174 6.41930 6.47935 6.85560 7.37166 8.91546 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018967 B = 0.003840 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.872187 B = 7289.778959 C = 8402.557693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.018 4.018 3 C -0.108 4.108 4 C -0.055 4.055 5 C -0.076 4.076 6 N 0.033 4.967 7 O -0.220 6.220 8 O -0.156 6.156 9 C -0.045 4.045 10 C -0.075 4.075 11 C 0.121 3.879 12 H 0.105 0.895 13 C -0.174 4.174 14 N -0.699 5.699 15 C 0.089 3.911 16 C 0.029 3.971 17 C -0.542 4.542 18 H 0.065 0.935 19 C -0.001 4.001 20 N -0.934 5.934 21 Si 0.967 3.033 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.260 1.260 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.189 0.811 29 H 0.168 0.832 30 H 0.133 0.867 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.338 0.662 35 H 0.063 0.937 36 H 0.030 0.970 37 H -0.011 1.011 38 H -0.011 1.011 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.454 21.169 -9.361 25.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.019 4.019 3 C -0.126 4.126 4 C -0.074 4.074 5 C -0.159 4.159 6 N 0.546 4.454 7 O -0.423 6.423 8 O -0.378 6.378 9 C -0.065 4.065 10 C -0.077 4.077 11 C 0.011 3.989 12 H 0.123 0.877 13 C -0.232 4.232 14 N -0.329 5.329 15 C -0.040 4.040 16 C -0.009 4.009 17 C -0.581 4.581 18 H 0.083 0.917 19 C -0.199 4.199 20 N -0.574 5.574 21 Si 0.792 3.208 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.184 1.184 25 H 0.111 0.889 26 H 0.100 0.900 27 H 0.123 0.877 28 H 0.206 0.794 29 H 0.186 0.814 30 H 0.151 0.849 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.156 0.844 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.007 0.993 38 H 0.007 0.993 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.929 21.280 -8.693 25.040 hybrid contribution 0.756 -1.704 -0.233 1.878 sum -9.173 19.576 -8.926 23.389 Atomic orbital electron populations 1.21178 0.87394 1.05494 1.04546 1.20611 0.98896 0.91406 0.91005 1.21488 0.91397 0.99872 0.99857 1.21354 0.95741 0.96239 0.94106 1.21319 0.77265 0.98416 1.18897 1.44028 1.04975 0.99884 0.96551 1.94592 1.70187 1.21016 1.56508 1.94434 1.70188 1.20662 1.52472 1.20850 0.95266 0.96630 0.93705 1.19848 0.91289 0.96147 1.00381 1.20550 0.95045 0.87697 0.95637 0.87695 1.22457 1.02406 1.02916 0.95432 1.60588 1.19222 1.13537 1.39584 1.21771 0.94778 0.90212 0.97190 1.18937 0.94670 0.92759 0.94495 1.21614 0.93731 1.04814 1.37932 0.91698 1.26007 0.96135 1.01322 0.96437 1.70128 1.10502 1.31326 1.45431 0.85414 0.78810 0.78672 0.77944 1.19716 1.21051 1.18389 0.88899 0.90032 0.87719 0.79369 0.81417 0.84875 0.92821 0.92022 0.89228 0.84351 0.91897 0.95214 0.99310 0.99267 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 9.22 71.24 0.66 -0.38 16 2 C -0.02 -0.27 5.88 -19.86 -0.12 -0.38 16 3 C -0.11 -1.28 9.70 22.27 0.22 -1.07 16 4 C -0.06 -0.98 9.56 22.27 0.21 -0.77 16 5 C -0.08 -1.99 6.85 36.37 0.25 -1.74 16 6 N 0.03 1.06 4.45 -46.46 -0.21 0.85 16 7 O -0.22 -8.21 18.45 18.89 0.35 -7.86 16 8 O -0.16 -4.80 18.45 18.89 0.35 -4.45 16 9 C -0.04 -1.23 8.83 22.27 0.20 -1.03 16 10 C -0.08 -1.64 5.06 -19.86 -0.10 -1.74 16 11 C 0.12 2.80 2.10 44.17 0.09 2.89 16 12 H 0.11 2.23 6.65 -2.39 -0.02 2.21 16 13 C -0.17 -3.34 8.95 71.98 0.64 -2.70 16 14 N -0.70 -23.06 5.25 -495.45 -2.60 -25.66 16 15 C 0.09 3.49 5.42 86.30 0.47 3.96 16 16 C 0.03 1.53 5.23 29.85 0.16 1.68 16 17 C -0.54 -30.56 9.11 25.60 0.23 -30.33 16 18 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 19 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 20 N -0.93 -57.78 13.29 21.45 0.28 -57.50 16 21 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 24 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 25 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.08 0.67 5.43 -2.39 -0.01 0.66 16 27 H 0.10 0.29 8.08 -2.38 -0.02 0.27 16 28 H 0.19 0.62 8.06 -2.91 -0.02 0.60 16 29 H 0.17 2.30 7.61 -2.91 -0.02 2.27 16 30 H 0.13 4.27 6.44 -2.91 -0.02 4.25 16 31 H 0.05 1.10 8.13 -2.39 -0.02 1.09 16 32 H 0.06 1.28 7.45 -2.38 -0.02 1.27 16 33 H 0.09 1.21 6.91 -2.39 -0.02 1.19 16 34 H 0.34 11.36 7.90 -89.69 -0.71 10.65 16 35 H 0.06 2.42 8.06 -2.39 -0.02 2.40 16 36 H 0.03 1.10 7.44 -2.39 -0.02 1.09 16 37 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 39 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -72.23 330.75 3.93 -68.31 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.36 Total: 11.47 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: 3.37 Total: -31.20 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -2.52 Total: -82.31 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.70 Total: -12.31 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -72.23 3.93 -68.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541569822.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.613 kcal (2) G-P(sol) polarization free energy of solvation -72.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds