Wall clock time and date at job start Mon Mar 30 2020 23:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99562 * 2 1 4 4 C 1.38220 * 119.99862 * 179.72405 * 3 2 1 5 5 C 1.38255 * 119.99693 * 0.26328 * 4 3 2 6 6 N 1.48024 * 119.99838 * 180.02562 * 5 4 3 7 7 O 1.21798 * 119.99792 * 359.97438 * 6 5 4 8 8 O 1.21803 * 119.99661 * 180.02562 * 6 5 4 9 9 C 1.38216 * 120.00139 * 359.97438 * 5 4 3 10 10 C 1.38208 * 120.00304 * 180.24599 * 2 1 3 11 11 C 1.50698 * 120.00211 * 359.97438 * 10 2 1 12 12 H 1.09006 * 109.47077 * 40.28396 * 11 10 2 13 13 C 1.52995 * 109.47223 * 280.28695 * 11 10 2 14 14 N 1.46897 * 109.47501 * 160.27985 * 11 10 2 15 15 C 1.46901 * 111.00400 * 205.00241 * 14 11 10 16 16 C 1.52999 * 109.47149 * 180.02562 * 15 14 11 17 17 C 1.50697 * 109.47081 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99762 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00088 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99893 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99887 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47267 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46935 * 120.00077 * 21 19 17 24 24 H 1.48500 * 109.46994 * 240.00055 * 21 19 17 25 25 H 1.09000 * 109.47366 * 89.99616 * 1 2 3 26 26 H 1.09000 * 109.46813 * 209.99274 * 1 2 3 27 27 H 1.09001 * 109.47363 * 329.99778 * 1 2 3 28 28 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.00153 * 180.27785 * 4 3 2 30 30 H 1.08001 * 119.99666 * 180.02562 * 9 5 4 31 31 H 1.09002 * 109.47546 * 59.99640 * 13 11 10 32 32 H 1.08997 * 109.47299 * 179.97438 * 13 11 10 33 33 H 1.09005 * 109.47106 * 299.99105 * 13 11 10 34 34 H 1.00907 * 110.99680 * 81.04491 * 14 11 10 35 35 H 1.08999 * 109.46482 * 300.00251 * 15 14 11 36 36 H 1.08993 * 109.46750 * 60.00230 * 15 14 11 37 37 H 1.09000 * 109.47009 * 300.00253 * 16 15 14 38 38 H 1.09004 * 109.46843 * 60.00007 * 16 15 14 39 39 H 0.96996 * 119.99713 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0058 5 6 4.2717 0.0002 0.0060 6 7 5.7519 0.0002 0.0128 7 8 6.3608 1.0551 0.0176 8 8 6.3609 -1.0546 0.0125 9 6 3.5806 -1.1968 0.0011 10 6 2.1981 -1.1969 -0.0051 11 6 1.4447 -2.5020 -0.0102 12 1 0.5838 -2.4221 -0.6740 13 6 0.9672 -2.8207 1.4080 14 7 2.3288 -3.5760 -0.4822 15 6 1.5525 -4.6814 -1.0597 16 6 2.5056 -5.7784 -1.5384 17 6 1.7092 -6.9126 -2.1303 18 1 0.6311 -6.8564 -2.1622 19 6 2.3569 -8.0216 -2.6320 20 7 3.6697 -8.0897 -2.5935 21 14 1.3697 -9.4271 -3.3663 22 1 -0.0785 -9.1072 -3.2909 23 1 1.7608 -9.6178 -4.7861 24 1 1.6421 -10.6734 -2.6061 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5137 27 1 -0.3634 0.8900 0.5139 28 1 1.6582 2.1327 0.0004 29 1 4.1203 2.1328 0.0103 30 1 4.1207 -2.1321 0.0017 31 1 0.3111 -2.0238 1.7582 32 1 0.4219 -3.7645 1.4043 33 1 1.8281 -2.9008 2.0718 34 1 2.9277 -3.9041 0.2607 35 1 0.8815 -5.0881 -0.3031 36 1 0.9686 -4.3133 -1.9032 37 1 3.1769 -5.3718 -2.2947 38 1 3.0892 -6.1463 -0.6945 39 1 4.1254 -8.8697 -2.9468 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541569823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:59 Heat of formation + Delta-G solvation = 6.610254 kcal Electronic energy + Delta-G solvation = -21123.298305 eV Core-core repulsion = 17840.540694 eV Total energy + Delta-G solvation = -3282.757610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.11121 -40.17203 -36.89776 -36.45690 -33.97345 -33.22539 -31.79714 -29.91684 -28.81460 -27.92050 -25.20938 -24.45906 -23.76964 -21.88352 -20.87500 -20.68907 -18.79412 -18.53641 -17.44408 -16.49089 -15.94979 -15.90031 -15.40009 -14.68219 -14.47509 -14.32763 -14.16867 -13.99933 -13.19487 -12.73742 -12.68480 -12.49518 -12.33142 -12.17528 -12.07611 -11.60081 -11.44238 -11.21896 -11.14545 -11.06047 -10.99536 -10.95426 -10.55965 -10.13320 -9.50218 -9.46295 -9.22492 -9.14009 -8.39951 -8.05066 -6.02996 -4.06376 -0.16216 0.85055 1.33016 1.46593 3.12729 3.28755 3.36364 3.39375 4.15537 4.23011 4.37680 4.44399 4.49805 4.61615 4.88000 5.03745 5.06059 5.09725 5.19684 5.23795 5.33088 5.40743 5.49841 5.59794 5.70207 5.76630 5.81998 5.94489 6.13256 6.18640 6.23183 6.30531 6.49306 6.86706 7.29912 7.61713 7.69813 7.70881 7.83104 8.01543 8.37356 9.00924 9.57875 11.08312 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018816 B = 0.003868 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.721319 B = 7237.964700 C = 8398.635416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.033 4.033 3 C -0.124 4.124 4 C -0.062 4.062 5 C -0.054 4.054 6 N 0.030 4.970 7 O -0.175 6.175 8 O -0.153 6.153 9 C -0.025 4.025 10 C -0.065 4.065 11 C 0.119 3.881 12 H 0.094 0.906 13 C -0.181 4.181 14 N -0.688 5.688 15 C 0.068 3.932 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.054 0.946 19 C 0.059 3.941 20 N -0.891 5.891 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.284 1.284 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.143 0.857 29 H 0.149 0.851 30 H 0.163 0.837 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.341 0.659 35 H 0.020 0.980 36 H 0.059 0.941 37 H 0.026 0.974 38 H 0.015 0.985 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.565 19.246 8.126 21.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.034 4.034 3 C -0.142 4.142 4 C -0.081 4.081 5 C -0.137 4.137 6 N 0.549 4.451 7 O -0.387 6.387 8 O -0.371 6.371 9 C -0.044 4.044 10 C -0.066 4.066 11 C 0.008 3.992 12 H 0.112 0.888 13 C -0.239 4.239 14 N -0.318 5.318 15 C -0.060 4.060 16 C -0.013 4.013 17 C -0.562 4.562 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.530 5.530 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.161 0.839 29 H 0.166 0.834 30 H 0.180 0.820 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.159 0.841 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.033 0.967 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.005 19.434 7.458 21.963 hybrid contribution -0.307 -1.191 0.310 1.269 sum -7.313 18.242 7.768 21.133 Atomic orbital electron populations 1.21075 0.89994 1.03954 1.03604 1.20208 0.97172 0.92310 0.93725 1.20977 0.92414 0.98455 1.02398 1.20958 0.94683 0.96909 0.95514 1.21138 0.79141 0.97097 1.16275 1.43651 1.03753 1.00387 0.97322 1.94495 1.69268 1.20852 1.54117 1.94591 1.69092 1.20488 1.52920 1.21012 0.94343 0.97396 0.91650 1.19868 0.92209 0.95311 0.99236 1.20455 0.94629 0.88657 0.95483 0.88769 1.22552 1.02049 1.02450 0.96898 1.60714 1.22023 1.12345 1.36727 1.22207 0.96372 0.90518 0.96905 1.19081 0.94378 0.91166 0.96714 1.21168 0.93089 1.02274 1.39714 0.92734 1.25002 0.94856 0.98454 0.95985 1.69979 1.07238 1.29545 1.46192 0.86542 0.80239 0.82284 0.78950 1.19802 1.20951 1.20995 0.89795 0.90047 0.90723 0.83902 0.83376 0.81998 0.91966 0.91314 0.92146 0.84098 0.96178 0.92214 0.95569 0.96672 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 9.24 36.00 0.33 -0.51 16 2 C -0.03 -0.30 5.87 -104.63 -0.61 -0.92 16 3 C -0.12 -1.02 9.70 -39.58 -0.38 -1.41 16 4 C -0.06 -0.63 9.56 -39.58 -0.38 -1.01 16 5 C -0.05 -0.71 6.85 -79.95 -0.55 -1.25 16 6 N 0.03 0.47 4.45 33.96 0.15 0.62 16 7 O -0.17 -2.69 18.45 -29.46 -0.54 -3.23 16 8 O -0.15 -2.61 18.45 -29.46 -0.54 -3.15 16 9 C -0.02 -0.33 8.84 -39.58 -0.35 -0.68 16 10 C -0.06 -0.75 5.09 -104.63 -0.53 -1.28 16 11 C 0.12 1.44 2.12 -68.87 -0.15 1.29 16 12 H 0.09 1.12 6.96 -51.93 -0.36 0.76 16 13 C -0.18 -1.87 8.90 37.15 0.33 -1.54 16 14 N -0.69 -10.96 5.09 -107.96 -0.55 -11.51 16 15 C 0.07 1.31 5.42 -3.82 -0.02 1.29 16 16 C 0.02 0.61 5.23 -27.88 -0.15 0.46 16 17 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 18 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 21 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.52 4.99 -51.93 -0.26 0.26 16 27 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 28 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 29 H 0.15 1.27 7.61 -52.49 -0.40 0.87 16 30 H 0.16 2.36 6.39 -52.49 -0.34 2.02 16 31 H 0.06 0.51 6.35 -51.93 -0.33 0.18 16 32 H 0.07 0.76 7.45 -51.93 -0.39 0.38 16 33 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 34 H 0.34 5.31 8.01 -39.29 -0.31 4.99 16 35 H 0.02 0.37 7.44 -51.93 -0.39 -0.01 16 36 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 37 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 329.98 15.07 4.97 4.97 Total: -1.00 -31.33 329.98 -8.93 -40.25 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.27 Total: 0.42 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -2.87 Total: -18.81 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.34 Total: -36.82 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -1.09 Total: -6.38 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.33 -8.93 -40.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541569823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.864 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds