Wall clock time and date at job start Mon Mar 30 2020 23:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99562 * 2 1 4 4 C 1.38220 * 119.99862 * 179.72405 * 3 2 1 5 5 C 1.38255 * 119.99693 * 0.26328 * 4 3 2 6 6 N 1.48024 * 119.99838 * 180.02562 * 5 4 3 7 7 O 1.21798 * 119.99792 * 359.97438 * 6 5 4 8 8 O 1.21803 * 119.99661 * 180.02562 * 6 5 4 9 9 C 1.38216 * 120.00139 * 359.97438 * 5 4 3 10 10 C 1.38208 * 120.00304 * 180.24599 * 2 1 3 11 11 C 1.50698 * 120.00211 * 359.97438 * 10 2 1 12 12 H 1.09006 * 109.47077 * 40.28396 * 11 10 2 13 13 C 1.52995 * 109.47223 * 280.28695 * 11 10 2 14 14 N 1.46897 * 109.47501 * 160.27985 * 11 10 2 15 15 C 1.46901 * 111.00400 * 205.00241 * 14 11 10 16 16 C 1.52999 * 109.47149 * 180.02562 * 15 14 11 17 17 C 1.50697 * 109.47081 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99762 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00088 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99893 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99887 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47267 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46935 * 120.00077 * 21 19 17 24 24 H 1.48500 * 109.46994 * 240.00055 * 21 19 17 25 25 H 1.09000 * 109.47366 * 89.99616 * 1 2 3 26 26 H 1.09000 * 109.46813 * 209.99274 * 1 2 3 27 27 H 1.09001 * 109.47363 * 329.99778 * 1 2 3 28 28 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.00153 * 180.27785 * 4 3 2 30 30 H 1.08001 * 119.99666 * 180.02562 * 9 5 4 31 31 H 1.09002 * 109.47546 * 59.99640 * 13 11 10 32 32 H 1.08997 * 109.47299 * 179.97438 * 13 11 10 33 33 H 1.09005 * 109.47106 * 299.99105 * 13 11 10 34 34 H 1.00907 * 110.99680 * 81.04491 * 14 11 10 35 35 H 1.08999 * 109.46482 * 300.00251 * 15 14 11 36 36 H 1.08993 * 109.46750 * 60.00230 * 15 14 11 37 37 H 1.09000 * 109.47009 * 300.00253 * 16 15 14 38 38 H 1.09004 * 109.46843 * 60.00007 * 16 15 14 39 39 H 0.96996 * 119.99713 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0058 5 6 4.2717 0.0002 0.0060 6 7 5.7519 0.0002 0.0128 7 8 6.3608 1.0551 0.0176 8 8 6.3609 -1.0546 0.0125 9 6 3.5806 -1.1968 0.0011 10 6 2.1981 -1.1969 -0.0051 11 6 1.4447 -2.5020 -0.0102 12 1 0.5838 -2.4221 -0.6740 13 6 0.9672 -2.8207 1.4080 14 7 2.3288 -3.5760 -0.4822 15 6 1.5525 -4.6814 -1.0597 16 6 2.5056 -5.7784 -1.5384 17 6 1.7092 -6.9126 -2.1303 18 1 0.6311 -6.8564 -2.1622 19 6 2.3569 -8.0216 -2.6320 20 7 3.6697 -8.0897 -2.5935 21 14 1.3697 -9.4271 -3.3663 22 1 -0.0785 -9.1072 -3.2909 23 1 1.7608 -9.6178 -4.7861 24 1 1.6421 -10.6734 -2.6061 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5137 27 1 -0.3634 0.8900 0.5139 28 1 1.6582 2.1327 0.0004 29 1 4.1203 2.1328 0.0103 30 1 4.1207 -2.1321 0.0017 31 1 0.3111 -2.0238 1.7582 32 1 0.4219 -3.7645 1.4043 33 1 1.8281 -2.9008 2.0718 34 1 2.9277 -3.9041 0.2607 35 1 0.8815 -5.0881 -0.3031 36 1 0.9686 -4.3133 -1.9032 37 1 3.1769 -5.3718 -2.2947 38 1 3.0892 -6.1463 -0.6945 39 1 4.1254 -8.8697 -2.9468 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541569823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:58 Heat of formation + Delta-G solvation = -11.686688 kcal Electronic energy + Delta-G solvation = -21124.091720 eV Core-core repulsion = 17840.540694 eV Total energy + Delta-G solvation = -3283.551025 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.24884 -41.06644 -38.08694 -37.66425 -35.51324 -34.48169 -33.19316 -31.12792 -29.73178 -29.31139 -26.27660 -25.99481 -24.84120 -23.01165 -22.29879 -21.88048 -19.86379 -19.68718 -18.60708 -18.52175 -16.97274 -16.81930 -16.62176 -16.30400 -15.79064 -15.24182 -15.07512 -14.97568 -14.39338 -14.20724 -13.92348 -13.42264 -13.25274 -13.21029 -13.05625 -12.87643 -12.84859 -12.73128 -12.48458 -12.42266 -12.32409 -12.18800 -12.01198 -11.91908 -11.40399 -11.23506 -10.58668 -10.25449 -10.06007 -9.35559 -8.20864 -6.32861 -1.21907 0.02524 0.31320 0.42903 1.40103 1.40663 1.53684 2.28775 2.39754 3.13103 3.14546 3.36247 3.53858 3.71980 3.85906 3.94835 4.15899 4.20873 4.24167 4.49782 4.53097 4.60381 4.65605 4.74782 4.80038 4.84051 4.91181 4.95164 5.05441 5.12678 5.15121 5.27518 5.36118 5.45236 5.59487 5.65681 5.78106 6.10615 6.24241 6.42066 6.48065 6.85686 7.37113 8.91577 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018816 B = 0.003868 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.721319 B = 7237.964700 C = 8398.635416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.018 4.018 3 C -0.108 4.108 4 C -0.055 4.055 5 C -0.076 4.076 6 N 0.033 4.967 7 O -0.155 6.155 8 O -0.221 6.221 9 C -0.045 4.045 10 C -0.076 4.076 11 C 0.121 3.879 12 H 0.104 0.896 13 C -0.175 4.175 14 N -0.699 5.699 15 C 0.089 3.911 16 C 0.029 3.971 17 C -0.541 4.541 18 H 0.065 0.935 19 C -0.001 4.001 20 N -0.934 5.934 21 Si 0.967 3.033 22 H -0.258 1.258 23 H -0.280 1.280 24 H -0.279 1.279 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.189 0.811 29 H 0.168 0.832 30 H 0.134 0.866 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.339 0.661 35 H 0.030 0.970 36 H 0.062 0.938 37 H -0.011 1.011 38 H -0.011 1.011 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.182 21.498 8.386 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.019 4.019 3 C -0.126 4.126 4 C -0.074 4.074 5 C -0.159 4.159 6 N 0.545 4.455 7 O -0.377 6.377 8 O -0.424 6.424 9 C -0.065 4.065 10 C -0.078 4.078 11 C 0.011 3.989 12 H 0.122 0.878 13 C -0.233 4.233 14 N -0.330 5.330 15 C -0.039 4.039 16 C -0.009 4.009 17 C -0.580 4.580 18 H 0.083 0.917 19 C -0.199 4.199 20 N -0.574 5.574 21 Si 0.792 3.208 22 H -0.181 1.181 23 H -0.206 1.206 24 H -0.205 1.205 25 H 0.112 0.888 26 H 0.101 0.899 27 H 0.122 0.878 28 H 0.206 0.794 29 H 0.186 0.814 30 H 0.152 0.848 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.157 0.843 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.007 0.993 38 H 0.007 0.993 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.608 21.581 7.730 25.259 hybrid contribution 0.751 -1.691 0.247 1.866 sum -9.857 19.890 7.977 23.588 Atomic orbital electron populations 1.21216 0.87377 1.05556 1.04614 1.20600 0.98901 0.91371 0.91025 1.21490 0.91380 0.99880 0.99875 1.21356 0.95752 0.96217 0.94125 1.21330 0.77252 0.98433 1.18915 1.44039 1.04994 0.99878 0.96543 1.94432 1.70212 1.20651 1.52413 1.94598 1.70199 1.21012 1.56585 1.20885 0.95328 0.96676 0.93603 1.19857 0.91283 0.96145 1.00474 1.20524 0.94142 0.87484 0.96717 0.87802 1.22487 1.02196 1.03153 0.95474 1.60574 1.22744 1.12054 1.37597 1.21767 0.94950 0.89877 0.97337 1.18943 0.94581 0.92712 0.94659 1.21643 0.93806 1.03022 1.39513 0.91706 1.26008 0.95897 1.01590 0.96431 1.70132 1.09276 1.30586 1.47404 0.85366 0.79214 0.78402 0.77845 1.18137 1.20622 1.20467 0.88821 0.89918 0.87751 0.79358 0.81428 0.84783 0.88996 0.92024 0.92788 0.84312 0.95186 0.91943 0.99275 0.99270 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 9.24 71.24 0.66 -0.35 16 2 C -0.02 -0.26 5.87 -19.87 -0.12 -0.38 16 3 C -0.11 -1.28 9.70 22.27 0.22 -1.06 16 4 C -0.06 -0.98 9.56 22.27 0.21 -0.77 16 5 C -0.08 -2.01 6.85 36.37 0.25 -1.76 16 6 N 0.03 1.06 4.45 -46.46 -0.21 0.86 16 7 O -0.16 -4.81 18.45 18.89 0.35 -4.46 16 8 O -0.22 -8.35 18.45 18.88 0.35 -8.01 16 9 C -0.05 -1.25 8.84 22.27 0.20 -1.06 16 10 C -0.08 -1.66 5.09 -19.87 -0.10 -1.76 16 11 C 0.12 2.81 2.12 44.17 0.09 2.91 16 12 H 0.10 2.22 6.96 -2.38 -0.02 2.20 16 13 C -0.17 -3.31 8.90 71.98 0.64 -2.67 16 14 N -0.70 -23.07 5.09 -495.47 -2.52 -25.59 16 15 C 0.09 3.50 5.42 86.30 0.47 3.97 16 16 C 0.03 1.51 5.23 29.85 0.16 1.67 16 17 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 18 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 19 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 20 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 21 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 22 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.08 0.66 4.99 -2.39 -0.01 0.65 16 27 H 0.10 0.27 8.09 -2.39 -0.02 0.25 16 28 H 0.19 0.60 8.06 -2.91 -0.02 0.58 16 29 H 0.17 2.30 7.61 -2.91 -0.02 2.28 16 30 H 0.13 4.39 6.39 -2.91 -0.02 4.37 16 31 H 0.09 1.20 6.35 -2.39 -0.02 1.18 16 32 H 0.06 1.27 7.45 -2.39 -0.02 1.25 16 33 H 0.05 1.10 8.13 -2.38 -0.02 1.08 16 34 H 0.34 11.35 8.01 -89.69 -0.72 10.64 16 35 H 0.03 1.11 7.44 -2.39 -0.02 1.10 16 36 H 0.06 2.41 8.05 -2.39 -0.02 2.39 16 37 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 38 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 39 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -72.48 329.98 4.00 -68.48 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.35 Total: 11.33 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 3.37 Total: -31.19 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -2.44 Total: -82.27 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.70 Total: -12.46 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -72.48 4.00 -68.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541569823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.789 kcal (2) G-P(sol) polarization free energy of solvation -72.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds