Wall clock time and date at job start Mon Mar 30 2020 23:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99493 * 359.97438 * 4 3 2 6 6 C 1.38214 * 120.00052 * 0.02562 * 5 4 3 7 7 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 8 8 C 1.50695 * 119.99818 * 0.02562 * 7 2 1 9 9 H 1.09000 * 109.47236 * 324.99456 * 8 7 2 10 10 C 1.52999 * 109.47313 * 84.99738 * 8 7 2 11 11 O 1.42901 * 109.46921 * 55.00135 * 10 8 7 12 12 N 1.46908 * 109.46701 * 204.99871 * 8 7 2 13 13 C 1.46905 * 110.99671 * 154.99873 * 12 8 7 14 14 C 1.50701 * 109.46838 * 179.97438 * 13 12 8 15 15 O 1.21291 * 119.99804 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00142 * 179.97438 * 14 13 12 17 17 C 1.37100 * 120.00345 * 180.02562 * 16 14 13 18 18 H 1.07997 * 119.99867 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99992 * 179.97438 * 17 16 14 20 20 N 1.31413 * 120.00230 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99810 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47384 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47043 * 120.00373 * 21 19 17 24 24 H 1.48498 * 109.47123 * 240.00433 * 21 19 17 25 25 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 28 28 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 29 29 H 1.07994 * 120.00533 * 180.02562 * 4 3 2 30 30 H 1.08001 * 119.99773 * 180.02562 * 5 4 3 31 31 H 1.08000 * 120.00080 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.47184 * 174.99667 * 10 8 7 33 33 H 1.08993 * 109.47400 * 294.99635 * 10 8 7 34 34 H 0.96696 * 113.99748 * 180.02562 * 11 10 8 35 35 H 1.00903 * 110.99760 * 278.95069 * 12 8 7 36 36 H 1.08994 * 109.47366 * 299.99732 * 13 12 8 37 37 H 1.08998 * 109.46974 * 60.00275 * 13 12 8 38 38 H 0.97005 * 119.99645 * 0.02562 * 16 14 13 39 39 H 0.96998 * 119.99658 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5806 -1.1969 0.0016 7 6 2.1981 -1.1970 0.0058 8 6 1.4446 -2.5020 0.0116 9 1 0.5337 -2.3930 0.6002 10 6 1.0812 -2.8875 -1.4238 11 8 2.2652 -2.9167 -2.2234 12 7 2.2867 -3.5510 0.6021 13 6 1.4650 -4.6299 1.1668 14 6 2.3615 -5.6853 1.7615 15 8 3.5662 -5.5515 1.7194 16 7 1.8245 -6.7772 2.3409 17 6 2.6400 -7.7371 2.8824 18 1 3.7127 -7.6180 2.8450 19 6 2.0863 -8.8625 3.4802 20 7 0.7810 -9.0072 3.5262 21 14 3.1975 -10.1707 4.2173 22 1 4.6170 -9.7737 4.0366 23 1 2.9037 -10.3106 5.6662 24 1 2.9551 -11.4675 3.5356 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6583 2.1327 -0.0004 29 1 4.1204 2.1326 0.0010 30 1 5.3517 0.0001 0.0024 31 1 4.1206 -2.1322 0.0029 32 1 0.6152 -3.8728 -1.4285 33 1 0.3852 -2.1546 -1.8317 34 1 2.1097 -3.1540 -3.1478 35 1 2.9423 -3.9121 -0.0746 36 1 0.8163 -4.2243 1.9431 37 1 0.8558 -5.0730 0.3790 38 1 0.8609 -6.8839 2.3748 39 1 0.3945 -9.7930 3.9433 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543839736.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:45 Heat of formation + Delta-G solvation = -60.979664 kcal Electronic energy + Delta-G solvation = -21310.203149 eV Core-core repulsion = 18024.514620 eV Total energy + Delta-G solvation = -3285.688529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.81490 -38.24091 -37.17518 -34.97815 -33.84697 -32.85733 -31.32985 -30.96349 -28.39158 -26.83997 -26.09944 -24.06829 -23.14891 -21.27746 -20.18252 -19.26037 -17.95589 -17.52196 -16.61117 -15.88837 -15.51479 -15.28149 -14.98687 -14.55392 -14.41935 -14.12349 -13.84381 -13.60545 -13.46757 -12.98042 -12.77323 -12.43933 -12.24589 -12.17492 -11.97231 -11.63982 -11.54328 -11.44768 -11.05613 -10.76973 -10.71325 -10.33040 -10.21323 -10.06619 -9.50440 -8.57332 -8.47724 -8.44081 -8.01252 -7.93704 -6.40487 -3.81014 1.49640 1.61693 3.17516 3.27983 3.35595 3.86953 3.92713 4.05286 4.19456 4.46257 4.75408 4.90806 5.01277 5.04174 5.18974 5.21318 5.26058 5.27324 5.29983 5.39101 5.49724 5.54539 5.72722 5.79259 5.81640 5.92673 5.99807 6.18965 6.25552 6.30494 6.61062 6.72873 6.82498 7.18595 7.29481 7.53513 7.56987 7.73445 8.08404 8.63041 9.19707 9.55965 10.07651 10.77445 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029181 B = 0.003512 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.288530 B = 7971.675151 C = 8222.233605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.091 4.091 3 C -0.129 4.129 4 C -0.125 4.125 5 C -0.132 4.132 6 C -0.069 4.069 7 C -0.057 4.057 8 C 0.125 3.875 9 H 0.099 0.901 10 C 0.048 3.952 11 O -0.561 6.561 12 N -0.657 5.657 13 C 0.048 3.952 14 C 0.442 3.558 15 O -0.581 6.581 16 N -0.565 5.565 17 C -0.298 4.298 18 H 0.104 0.896 19 C 0.021 3.979 20 N -0.903 5.903 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.130 0.870 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.377 0.623 35 H 0.360 0.640 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.392 0.608 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.760 16.514 -10.224 19.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.143 4.143 5 C -0.150 4.150 6 C -0.088 4.088 7 C -0.058 4.058 8 C 0.014 3.986 9 H 0.117 0.883 10 C -0.031 4.031 11 O -0.366 6.366 12 N -0.290 5.290 13 C -0.084 4.084 14 C 0.228 3.772 15 O -0.464 6.464 16 N -0.202 5.202 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.148 0.852 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.223 0.777 35 H 0.181 0.819 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.225 0.775 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.697 16.916 -8.985 19.343 hybrid contribution -0.793 -1.364 -0.874 1.804 sum -3.490 15.551 -9.860 18.741 Atomic orbital electron populations 1.20848 0.91810 1.02752 1.01900 1.19653 0.95594 0.92742 1.01144 1.20838 0.94234 0.96925 1.02681 1.21039 0.94270 0.97811 1.01162 1.21151 0.99758 0.92635 1.01442 1.21016 0.93723 0.98225 0.95789 1.19413 0.93999 0.92749 0.99635 1.20639 0.96022 0.90601 0.91335 0.88299 1.22882 0.87580 0.99655 0.93021 1.86522 1.32367 1.93131 1.24532 1.60155 1.17108 1.12121 1.39645 1.21740 0.95461 0.92325 0.98892 1.19772 0.89010 0.83835 0.84601 1.90529 1.14915 1.78579 1.62424 1.41862 1.09505 1.17942 1.50860 1.19761 0.92303 0.97979 1.32676 0.87866 1.25255 0.96203 0.98711 0.97821 1.69621 1.09864 1.29851 1.45100 0.85802 0.80159 0.79965 0.78442 1.19202 1.20754 1.20798 0.91531 0.91710 0.91394 0.86685 0.86723 0.86480 0.85211 0.93306 0.93358 0.77705 0.81880 0.89599 0.94005 0.77508 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.41 36.01 0.34 -0.73 16 2 C -0.09 -1.10 5.88 -104.62 -0.62 -1.72 16 3 C -0.13 -1.48 9.70 -39.58 -0.38 -1.87 16 4 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 5 C -0.13 -1.74 10.05 -39.58 -0.40 -2.13 16 6 C -0.07 -1.04 9.05 -39.58 -0.36 -1.40 16 7 C -0.06 -0.80 4.66 -104.63 -0.49 -1.29 16 8 C 0.12 1.66 2.13 -68.86 -0.15 1.52 16 9 H 0.10 1.20 5.82 -51.93 -0.30 0.90 16 10 C 0.05 0.54 6.71 37.16 0.25 0.79 16 11 O -0.56 -6.62 12.28 -35.23 -0.43 -7.05 16 12 N -0.66 -11.15 4.88 -109.22 -0.53 -11.68 16 13 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 14 C 0.44 10.60 7.82 -10.99 -0.09 10.52 16 15 O -0.58 -16.07 15.78 5.55 0.09 -15.99 16 16 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 17 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 18 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.66 13.05 55.50 0.72 -23.93 16 21 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 27 H 0.07 0.61 6.02 -51.93 -0.31 0.30 16 28 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 29 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.13 2.13 6.89 -52.49 -0.36 1.77 16 32 H 0.05 0.53 7.35 -51.93 -0.38 0.15 16 33 H 0.05 0.45 7.94 -51.93 -0.41 0.04 16 34 H 0.38 2.77 9.12 45.56 0.42 3.19 16 35 H 0.36 6.57 7.06 -39.29 -0.28 6.30 16 36 H 0.09 1.40 8.05 -51.93 -0.42 0.99 16 37 H 0.04 0.66 7.36 -51.93 -0.38 0.28 16 38 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 328.12 15.07 4.94 4.94 Total: -1.00 -32.93 328.12 -7.22 -40.15 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -4.38 Total: 17.26 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -2.55 Total: -5.39 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.13 Total: -50.11 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.35 Total: -23.04 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.93 -7.22 -40.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543839736.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.831 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds