Wall clock time and date at job start Mon Mar 30 2020 23:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99493 * 359.97438 * 4 3 2 6 6 C 1.38214 * 120.00052 * 0.02562 * 5 4 3 7 7 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 8 8 C 1.50695 * 119.99818 * 0.02562 * 7 2 1 9 9 H 1.09000 * 109.47236 * 324.99456 * 8 7 2 10 10 C 1.52999 * 109.47313 * 84.99738 * 8 7 2 11 11 O 1.42901 * 109.46921 * 55.00135 * 10 8 7 12 12 N 1.46908 * 109.46701 * 204.99871 * 8 7 2 13 13 C 1.46905 * 110.99671 * 154.99873 * 12 8 7 14 14 C 1.50701 * 109.46838 * 179.97438 * 13 12 8 15 15 O 1.21291 * 119.99804 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00142 * 179.97438 * 14 13 12 17 17 C 1.37100 * 120.00345 * 180.02562 * 16 14 13 18 18 H 1.07997 * 119.99867 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99992 * 179.97438 * 17 16 14 20 20 N 1.31413 * 120.00230 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99810 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47384 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47043 * 120.00373 * 21 19 17 24 24 H 1.48498 * 109.47123 * 240.00433 * 21 19 17 25 25 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 28 28 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 29 29 H 1.07994 * 120.00533 * 180.02562 * 4 3 2 30 30 H 1.08001 * 119.99773 * 180.02562 * 5 4 3 31 31 H 1.08000 * 120.00080 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.47184 * 174.99667 * 10 8 7 33 33 H 1.08993 * 109.47400 * 294.99635 * 10 8 7 34 34 H 0.96696 * 113.99748 * 180.02562 * 11 10 8 35 35 H 1.00903 * 110.99760 * 278.95069 * 12 8 7 36 36 H 1.08994 * 109.47366 * 299.99732 * 13 12 8 37 37 H 1.08998 * 109.46974 * 60.00275 * 13 12 8 38 38 H 0.97005 * 119.99645 * 0.02562 * 16 14 13 39 39 H 0.96998 * 119.99658 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5806 -1.1969 0.0016 7 6 2.1981 -1.1970 0.0058 8 6 1.4446 -2.5020 0.0116 9 1 0.5337 -2.3930 0.6002 10 6 1.0812 -2.8875 -1.4238 11 8 2.2652 -2.9167 -2.2234 12 7 2.2867 -3.5510 0.6021 13 6 1.4650 -4.6299 1.1668 14 6 2.3615 -5.6853 1.7615 15 8 3.5662 -5.5515 1.7194 16 7 1.8245 -6.7772 2.3409 17 6 2.6400 -7.7371 2.8824 18 1 3.7127 -7.6180 2.8450 19 6 2.0863 -8.8625 3.4802 20 7 0.7810 -9.0072 3.5262 21 14 3.1975 -10.1707 4.2173 22 1 4.6170 -9.7737 4.0366 23 1 2.9037 -10.3106 5.6662 24 1 2.9551 -11.4675 3.5356 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6583 2.1327 -0.0004 29 1 4.1204 2.1326 0.0010 30 1 5.3517 0.0001 0.0024 31 1 4.1206 -2.1322 0.0029 32 1 0.6152 -3.8728 -1.4285 33 1 0.3852 -2.1546 -1.8317 34 1 2.1097 -3.1540 -3.1478 35 1 2.9423 -3.9121 -0.0746 36 1 0.8163 -4.2243 1.9431 37 1 0.8558 -5.0730 0.3790 38 1 0.8609 -6.8839 2.3748 39 1 0.3945 -9.7930 3.9433 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543839736.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:45 Heat of formation + Delta-G solvation = -86.211355 kcal Electronic energy + Delta-G solvation = -21311.297278 eV Core-core repulsion = 18024.514620 eV Total energy + Delta-G solvation = -3286.782657 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.84118 -40.01563 -38.21605 -36.26910 -35.73598 -33.78499 -33.28438 -32.17430 -29.49743 -27.73986 -27.62431 -25.74865 -24.16325 -22.27418 -21.27344 -20.97760 -19.93538 -18.53620 -17.98786 -17.16621 -16.78782 -16.52643 -16.38381 -15.90007 -15.78545 -15.54655 -15.17414 -14.87731 -14.58004 -14.10080 -13.90878 -13.72818 -13.45457 -13.37518 -13.25556 -12.97054 -12.86383 -12.77659 -12.45620 -12.40944 -12.12200 -11.72880 -11.64423 -11.52414 -10.91613 -10.37138 -10.02083 -9.54224 -9.46610 -9.23479 -8.47561 -5.96148 0.55373 0.64486 1.35998 1.41368 1.55654 2.04173 2.28607 2.81679 3.00830 3.19492 3.33499 3.64348 3.82430 4.05424 4.14273 4.18498 4.26270 4.30636 4.39998 4.40598 4.51714 4.52802 4.59293 4.74072 4.81323 4.91012 4.98328 5.06498 5.28880 5.39048 5.40687 5.65780 5.73479 5.79852 5.96070 6.15915 6.27144 6.36407 6.59795 6.89313 7.12181 7.55240 8.11223 8.70067 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029181 B = 0.003512 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.288530 B = 7971.675151 C = 8222.233605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.095 4.095 3 C -0.131 4.131 4 C -0.127 4.127 5 C -0.147 4.147 6 C -0.097 4.097 7 C -0.073 4.073 8 C 0.123 3.877 9 H 0.115 0.885 10 C 0.053 3.947 11 O -0.583 6.583 12 N -0.674 5.674 13 C 0.064 3.936 14 C 0.437 3.563 15 O -0.624 6.624 16 N -0.572 5.572 17 C -0.334 4.334 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.919 5.919 21 Si 0.992 3.008 22 H -0.275 1.275 23 H -0.270 1.270 24 H -0.269 1.269 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.124 0.876 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.394 0.606 35 H 0.348 0.652 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.397 0.603 39 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.566 17.653 -10.556 21.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.096 4.096 3 C -0.149 4.149 4 C -0.145 4.145 5 C -0.165 4.165 6 C -0.116 4.116 7 C -0.073 4.073 8 C 0.014 3.986 9 H 0.132 0.868 10 C -0.026 4.026 11 O -0.391 6.391 12 N -0.306 5.306 13 C -0.068 4.068 14 C 0.225 3.775 15 O -0.511 6.511 16 N -0.209 5.209 17 C -0.464 4.464 18 H 0.095 0.905 19 C -0.211 4.211 20 N -0.560 5.560 21 Si 0.816 3.184 22 H -0.200 1.200 23 H -0.195 1.195 24 H -0.194 1.194 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.161 0.839 29 H 0.158 0.842 30 H 0.142 0.858 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.243 0.757 35 H 0.168 0.832 36 H 0.124 0.876 37 H 0.087 0.913 38 H 0.231 0.769 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.549 18.065 -9.335 20.837 hybrid contribution -0.219 -1.638 -0.804 1.837 sum -4.769 16.428 -10.139 19.885 Atomic orbital electron populations 1.20911 0.89488 1.03635 1.03155 1.20012 0.97344 0.92142 1.00077 1.21248 0.94291 0.97951 1.01397 1.21364 0.94868 0.98098 1.00181 1.21329 1.00385 0.92867 1.01955 1.20953 0.94668 0.97784 0.98170 1.19551 0.93632 0.93780 1.00367 1.20777 0.95770 0.89169 0.92933 0.86766 1.22830 0.87592 1.00516 0.91709 1.86497 1.33196 1.93312 1.26054 1.60119 1.17875 1.12279 1.40304 1.21602 0.94329 0.90964 0.99922 1.20871 0.89274 0.84165 0.83199 1.90498 1.17319 1.79536 1.63728 1.41908 1.09489 1.18224 1.51292 1.19692 0.91655 0.99921 1.35114 0.90543 1.26020 0.97689 0.99993 0.97437 1.69672 1.10823 1.30575 1.44946 0.84881 0.77851 0.77529 0.78130 1.19977 1.19539 1.19438 0.89951 0.90205 0.91173 0.83860 0.84221 0.85832 0.88034 0.92874 0.90903 0.75690 0.83205 0.87556 0.91305 0.76888 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.73 9.41 71.24 0.67 -1.06 16 2 C -0.10 -2.10 5.88 -19.87 -0.12 -2.22 16 3 C -0.13 -2.68 9.70 22.27 0.22 -2.46 16 4 C -0.13 -2.79 10.05 22.27 0.22 -2.57 16 5 C -0.15 -3.92 10.05 22.27 0.22 -3.69 16 6 C -0.10 -3.01 9.05 22.27 0.20 -2.81 16 7 C -0.07 -1.97 4.66 -19.87 -0.09 -2.07 16 8 C 0.12 3.14 2.13 44.17 0.09 3.23 16 9 H 0.11 2.50 5.82 -2.39 -0.01 2.49 16 10 C 0.05 1.08 6.71 71.98 0.48 1.57 16 11 O -0.58 -13.42 12.28 -148.98 -1.83 -15.25 16 12 N -0.67 -22.99 4.88 -499.45 -2.44 -25.43 16 13 C 0.06 2.24 5.97 85.56 0.51 2.75 16 14 C 0.44 21.42 7.82 87.66 0.69 22.11 16 15 O -0.62 -36.04 15.78 -3.06 -0.05 -36.09 16 16 N -0.57 -29.78 5.29 -306.99 -1.62 -31.41 16 17 C -0.33 -19.33 9.68 84.04 0.81 -18.51 16 18 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 19 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 20 N -0.92 -49.71 13.05 21.66 0.28 -49.43 16 21 Si 0.99 43.42 29.55 68.60 2.03 45.45 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 27 H 0.07 1.02 6.02 -2.38 -0.01 1.01 16 28 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 29 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 30 H 0.12 2.93 8.06 -2.91 -0.02 2.90 16 31 H 0.10 3.62 6.89 -2.91 -0.02 3.60 16 32 H 0.05 1.04 7.35 -2.39 -0.02 1.02 16 33 H 0.07 1.14 7.94 -2.39 -0.02 1.12 16 34 H 0.39 5.43 9.12 -74.06 -0.68 4.76 16 35 H 0.35 13.21 7.06 -89.69 -0.63 12.58 16 36 H 0.11 3.30 8.05 -2.39 -0.02 3.28 16 37 H 0.07 2.05 7.36 -2.39 -0.02 2.04 16 38 H 0.40 19.43 7.90 -92.70 -0.73 18.70 16 39 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -72.81 328.12 -0.19 -73.00 By element: Atomic # 1 Polarization: 45.98 SS G_CDS: -0.94 Total: 45.04 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 4.38 Total: -5.89 kcal Atomic # 7 Polarization: -102.48 SS G_CDS: -3.78 Total: -106.26 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -1.88 Total: -51.34 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -72.81 -0.19 -73.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543839736.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.211 kcal (2) G-P(sol) polarization free energy of solvation -72.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds