Wall clock time and date at job start Mon Mar 30 2020 23:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.25725 * 3 2 1 5 5 C 1.38258 * 119.99779 * 359.50247 * 4 3 2 6 6 C 1.38211 * 120.00163 * 0.44980 * 5 4 3 7 7 C 1.38215 * 119.99534 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00262 * 359.97438 * 7 2 1 9 9 H 1.08995 * 109.46910 * 39.98999 * 8 7 2 10 10 C 1.53002 * 109.46703 * 279.99475 * 8 7 2 11 11 O 1.42896 * 109.47412 * 305.00069 * 10 8 7 12 12 N 1.46894 * 109.47293 * 159.99573 * 8 7 2 13 13 C 1.46900 * 111.00034 * 204.99601 * 12 8 7 14 14 C 1.50701 * 109.47122 * 180.02562 * 13 12 8 15 15 O 1.21295 * 120.00072 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00134 * 180.02562 * 14 13 12 17 17 C 1.37094 * 120.00326 * 180.02562 * 16 14 13 18 18 H 1.08007 * 119.99618 * 359.97438 * 17 16 14 19 19 C 1.38945 * 120.00380 * 179.97438 * 17 16 14 20 20 N 1.31416 * 119.99911 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00271 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47069 * 90.00063 * 21 19 17 23 23 H 1.48501 * 109.47162 * 210.00188 * 21 19 17 24 24 H 1.48501 * 109.47235 * 329.99972 * 21 19 17 25 25 H 1.09002 * 109.46776 * 89.99934 * 1 2 3 26 26 H 1.08993 * 109.47429 * 210.00606 * 1 2 3 27 27 H 1.08998 * 109.46961 * 330.00857 * 1 2 3 28 28 H 1.08002 * 119.99676 * 359.97122 * 3 2 1 29 29 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 30 30 H 1.08004 * 120.00379 * 180.28376 * 5 4 3 31 31 H 1.08002 * 120.00349 * 179.83142 * 6 5 4 32 32 H 1.09000 * 109.47193 * 65.00074 * 10 8 7 33 33 H 1.08999 * 109.46824 * 184.99994 * 10 8 7 34 34 H 0.96701 * 114.00341 * 180.02562 * 11 10 8 35 35 H 1.00907 * 111.00195 * 81.04152 * 12 8 7 36 36 H 1.08997 * 109.47096 * 300.00228 * 13 12 8 37 37 H 1.08999 * 109.46842 * 60.00539 * 13 12 8 38 38 H 0.97000 * 119.99726 * 359.97438 * 16 14 13 39 39 H 0.96996 * 119.99943 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0004 6 6 3.5806 -1.1971 0.0006 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0017 9 1 0.5807 -2.4235 -0.6584 10 6 0.9732 -2.8175 1.4228 11 8 2.0935 -2.8056 2.3098 12 7 2.3264 -3.5772 -0.4717 13 6 1.5475 -4.6838 -1.0432 14 6 2.4840 -5.7655 -1.5164 15 8 3.6825 -5.6283 -1.3894 16 7 1.9900 -6.8854 -2.0805 17 6 2.8419 -7.8697 -2.5104 18 1 3.9091 -7.7475 -2.3974 19 6 2.3326 -9.0244 -3.0915 20 7 1.0341 -9.1733 -3.2286 21 14 3.4935 -10.3653 -3.6780 22 1 3.7376 -11.3268 -2.5730 23 1 2.8845 -11.0785 -4.8294 24 1 4.7812 -9.7564 -4.0979 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8898 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 1.6584 2.1326 -0.0005 29 1 4.1205 2.1325 -0.0099 30 1 5.3517 -0.0003 0.0001 31 1 4.1205 -2.1324 0.0018 32 1 0.2499 -2.0666 1.7408 33 1 0.5062 -3.8023 1.4404 34 1 1.8684 -2.9985 3.2303 35 1 2.9285 -3.9037 0.2693 36 1 0.8797 -5.0888 -0.2829 37 1 0.9599 -4.3177 -1.8851 38 1 1.0316 -6.9953 -2.1816 39 1 0.6786 -9.9793 -3.6346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543839737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:48 Heat of formation + Delta-G solvation = -60.676144 kcal Electronic energy + Delta-G solvation = -21314.831860 eV Core-core repulsion = 18029.156492 eV Total energy + Delta-G solvation = -3285.675368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.82868 -38.23961 -37.17770 -34.97941 -33.84698 -32.87618 -31.32611 -30.95659 -28.37291 -26.91617 -26.08377 -24.05276 -23.10155 -21.26143 -20.21170 -19.26429 -17.96246 -17.54224 -16.61939 -15.89605 -15.52065 -15.28578 -15.00101 -14.48686 -14.42433 -14.13478 -13.81906 -13.51069 -13.48085 -12.96993 -12.81852 -12.50240 -12.26723 -12.09167 -12.03665 -11.62092 -11.53587 -11.44492 -11.03982 -10.79224 -10.75712 -10.38107 -10.20615 -10.01898 -9.49422 -8.57555 -8.46320 -8.43738 -8.01782 -7.93880 -6.40421 -3.81021 1.49614 1.62195 3.18982 3.27506 3.33886 3.87614 3.92667 4.03652 4.19342 4.46248 4.75903 4.89161 4.96064 5.08623 5.18073 5.20669 5.24094 5.26620 5.33967 5.43299 5.48906 5.55051 5.70373 5.77106 5.81401 5.95399 5.99462 6.18696 6.25608 6.31658 6.61186 6.73531 6.82611 7.19101 7.29753 7.53280 7.56739 7.73144 8.08080 8.63016 9.19555 9.55863 10.07599 10.77440 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029553 B = 0.003512 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.226723 B = 7970.801820 C = 8257.689939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.091 4.091 3 C -0.129 4.129 4 C -0.125 4.125 5 C -0.131 4.131 6 C -0.072 4.072 7 C -0.057 4.057 8 C 0.127 3.873 9 H 0.098 0.902 10 C 0.046 3.954 11 O -0.560 6.560 12 N -0.657 5.657 13 C 0.048 3.952 14 C 0.442 3.558 15 O -0.581 6.581 16 N -0.564 5.564 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.903 5.903 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.132 0.868 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.377 0.623 35 H 0.360 0.640 36 H 0.042 0.958 37 H 0.086 0.914 38 H 0.392 0.608 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.486 16.946 9.088 19.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.143 4.143 5 C -0.150 4.150 6 C -0.090 4.090 7 C -0.058 4.058 8 C 0.016 3.984 9 H 0.115 0.885 10 C -0.034 4.034 11 O -0.365 6.365 12 N -0.290 5.290 13 C -0.084 4.084 14 C 0.228 3.772 15 O -0.465 6.465 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.150 0.850 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.223 0.777 35 H 0.182 0.818 36 H 0.060 0.940 37 H 0.104 0.896 38 H 0.225 0.775 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.337 17.288 7.909 19.302 hybrid contribution -0.853 -1.319 0.880 1.801 sum -4.191 15.969 8.790 18.704 Atomic orbital electron populations 1.20886 0.91846 1.02467 1.02313 1.19649 0.95566 0.92744 1.01155 1.20833 0.94234 0.96911 1.02708 1.21040 0.94268 0.97815 1.01190 1.21159 0.99768 0.92635 1.01392 1.21067 0.93765 0.98335 0.95833 1.19429 0.94020 0.92714 0.99632 1.20569 0.95229 0.90473 0.92147 0.88455 1.22964 0.88836 0.99743 0.91843 1.86527 1.34001 1.94436 1.21531 1.60136 1.20181 1.09967 1.38742 1.21739 0.95460 0.91909 0.99301 1.19771 0.89165 0.83845 0.84456 1.90529 1.15661 1.79815 1.60478 1.41851 1.09656 1.15516 1.53098 1.19709 0.91982 0.95442 1.35656 0.87921 1.25254 0.96391 0.98760 0.97551 1.69613 1.11193 1.28783 1.44857 0.85858 0.79976 0.80283 0.78184 1.20450 1.20939 1.19382 0.91168 0.91595 0.91796 0.86702 0.86732 0.86473 0.84967 0.93135 0.93295 0.77704 0.81842 0.94001 0.89584 0.77503 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 9.26 36.01 0.33 -0.76 16 2 C -0.09 -1.10 5.88 -104.62 -0.61 -1.72 16 3 C -0.13 -1.48 9.70 -39.58 -0.38 -1.87 16 4 C -0.13 -1.48 10.05 -39.58 -0.40 -1.87 16 5 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 6 C -0.07 -1.08 9.29 -39.58 -0.37 -1.45 16 7 C -0.06 -0.80 4.61 -104.62 -0.48 -1.28 16 8 C 0.13 1.69 1.95 -68.87 -0.13 1.56 16 9 H 0.10 1.19 6.94 -51.93 -0.36 0.83 16 10 C 0.05 0.51 6.51 37.16 0.24 0.75 16 11 O -0.56 -6.66 12.47 -35.23 -0.44 -7.10 16 12 N -0.66 -11.13 4.71 -109.23 -0.51 -11.64 16 13 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 14 C 0.44 10.58 7.82 -10.99 -0.09 10.50 16 15 O -0.58 -16.05 15.78 5.54 0.09 -15.96 16 16 N -0.56 -14.42 5.29 -10.96 -0.06 -14.47 16 17 C -0.30 -8.40 9.68 -14.94 -0.14 -8.54 16 18 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.66 13.05 55.50 0.72 -23.93 16 21 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.56 4.96 -51.93 -0.26 0.30 16 27 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 28 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 31 H 0.13 2.19 6.84 -52.49 -0.36 1.84 16 32 H 0.05 0.47 6.32 -51.93 -0.33 0.14 16 33 H 0.05 0.53 7.35 -51.93 -0.38 0.15 16 34 H 0.38 2.80 9.12 45.56 0.42 3.21 16 35 H 0.36 6.58 7.17 -39.29 -0.28 6.30 16 36 H 0.04 0.66 7.36 -51.93 -0.38 0.28 16 37 H 0.09 1.41 8.06 -51.93 -0.42 0.99 16 38 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 326.30 15.07 4.92 4.92 Total: -1.00 -32.85 326.30 -7.16 -40.01 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -4.30 Total: 17.48 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -2.56 Total: -5.49 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.15 Total: -50.05 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.35 Total: -23.06 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.85 -7.16 -40.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543839737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.666 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds