Wall clock time and date at job start Mon Mar 30 2020 23:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.25725 * 3 2 1 5 5 C 1.38258 * 119.99779 * 359.50247 * 4 3 2 6 6 C 1.38211 * 120.00163 * 0.44980 * 5 4 3 7 7 C 1.38215 * 119.99534 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00262 * 359.97438 * 7 2 1 9 9 H 1.08995 * 109.46910 * 39.98999 * 8 7 2 10 10 C 1.53002 * 109.46703 * 279.99475 * 8 7 2 11 11 O 1.42896 * 109.47412 * 305.00069 * 10 8 7 12 12 N 1.46894 * 109.47293 * 159.99573 * 8 7 2 13 13 C 1.46900 * 111.00034 * 204.99601 * 12 8 7 14 14 C 1.50701 * 109.47122 * 180.02562 * 13 12 8 15 15 O 1.21295 * 120.00072 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00134 * 180.02562 * 14 13 12 17 17 C 1.37094 * 120.00326 * 180.02562 * 16 14 13 18 18 H 1.08007 * 119.99618 * 359.97438 * 17 16 14 19 19 C 1.38945 * 120.00380 * 179.97438 * 17 16 14 20 20 N 1.31416 * 119.99911 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00271 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47069 * 90.00063 * 21 19 17 23 23 H 1.48501 * 109.47162 * 210.00188 * 21 19 17 24 24 H 1.48501 * 109.47235 * 329.99972 * 21 19 17 25 25 H 1.09002 * 109.46776 * 89.99934 * 1 2 3 26 26 H 1.08993 * 109.47429 * 210.00606 * 1 2 3 27 27 H 1.08998 * 109.46961 * 330.00857 * 1 2 3 28 28 H 1.08002 * 119.99676 * 359.97122 * 3 2 1 29 29 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 30 30 H 1.08004 * 120.00379 * 180.28376 * 5 4 3 31 31 H 1.08002 * 120.00349 * 179.83142 * 6 5 4 32 32 H 1.09000 * 109.47193 * 65.00074 * 10 8 7 33 33 H 1.08999 * 109.46824 * 184.99994 * 10 8 7 34 34 H 0.96701 * 114.00341 * 180.02562 * 11 10 8 35 35 H 1.00907 * 111.00195 * 81.04152 * 12 8 7 36 36 H 1.08997 * 109.47096 * 300.00228 * 13 12 8 37 37 H 1.08999 * 109.46842 * 60.00539 * 13 12 8 38 38 H 0.97000 * 119.99726 * 359.97438 * 16 14 13 39 39 H 0.96996 * 119.99943 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0004 6 6 3.5806 -1.1971 0.0006 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0017 9 1 0.5807 -2.4235 -0.6584 10 6 0.9732 -2.8175 1.4228 11 8 2.0935 -2.8056 2.3098 12 7 2.3264 -3.5772 -0.4717 13 6 1.5475 -4.6838 -1.0432 14 6 2.4840 -5.7655 -1.5164 15 8 3.6825 -5.6283 -1.3894 16 7 1.9900 -6.8854 -2.0805 17 6 2.8419 -7.8697 -2.5104 18 1 3.9091 -7.7475 -2.3974 19 6 2.3326 -9.0244 -3.0915 20 7 1.0341 -9.1733 -3.2286 21 14 3.4935 -10.3653 -3.6780 22 1 3.7376 -11.3268 -2.5730 23 1 2.8845 -11.0785 -4.8294 24 1 4.7812 -9.7564 -4.0979 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8898 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 1.6584 2.1326 -0.0005 29 1 4.1205 2.1325 -0.0099 30 1 5.3517 -0.0003 0.0001 31 1 4.1205 -2.1324 0.0018 32 1 0.2499 -2.0666 1.7408 33 1 0.5062 -3.8023 1.4404 34 1 1.8684 -2.9985 3.2303 35 1 2.9285 -3.9037 0.2693 36 1 0.8797 -5.0888 -0.2829 37 1 0.9599 -4.3177 -1.8851 38 1 1.0316 -6.9953 -2.1816 39 1 0.6786 -9.9793 -3.6346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543839737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:48 Heat of formation + Delta-G solvation = -85.873748 kcal Electronic energy + Delta-G solvation = -21315.924510 eV Core-core repulsion = 18029.156492 eV Total energy + Delta-G solvation = -3286.768018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.85574 -40.01609 -38.22026 -36.27330 -35.73601 -33.80568 -33.28408 -32.16526 -29.48443 -27.81929 -27.60739 -25.73715 -24.10928 -22.26154 -21.29113 -20.99572 -19.93622 -18.56061 -17.99901 -17.15189 -16.79352 -16.55981 -16.38625 -15.92782 -15.77156 -15.48612 -15.17066 -14.88452 -14.49769 -14.11695 -13.89230 -13.74959 -13.45172 -13.39620 -13.28637 -12.96867 -12.88078 -12.78042 -12.43958 -12.41020 -12.12756 -11.73826 -11.71637 -11.51760 -10.86610 -10.37208 -10.02174 -9.54843 -9.45506 -9.23620 -8.47395 -5.96066 0.55059 0.64583 1.37391 1.41247 1.54131 2.04280 2.28565 2.81719 2.99295 3.19631 3.33116 3.64710 3.82302 4.06020 4.12280 4.18467 4.25880 4.31196 4.38421 4.41586 4.46176 4.59039 4.60661 4.70893 4.81237 4.88757 4.98765 5.08182 5.28767 5.39110 5.40603 5.65440 5.73518 5.79863 5.95771 6.15739 6.27157 6.36311 6.59837 6.88910 7.12081 7.55244 8.11219 8.70022 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029553 B = 0.003512 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.226723 B = 7970.801820 C = 8257.689939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.095 4.095 3 C -0.131 4.131 4 C -0.128 4.128 5 C -0.147 4.147 6 C -0.101 4.101 7 C -0.072 4.072 8 C 0.125 3.875 9 H 0.113 0.887 10 C 0.050 3.950 11 O -0.583 6.583 12 N -0.673 5.673 13 C 0.064 3.936 14 C 0.437 3.563 15 O -0.624 6.624 16 N -0.571 5.571 17 C -0.335 4.335 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.919 5.919 21 Si 0.992 3.008 22 H -0.270 1.270 23 H -0.269 1.269 24 H -0.275 1.275 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.123 0.877 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.394 0.606 35 H 0.348 0.652 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.397 0.603 39 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.308 18.115 9.360 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.145 4.145 5 C -0.165 4.165 6 C -0.119 4.119 7 C -0.073 4.073 8 C 0.015 3.985 9 H 0.130 0.870 10 C -0.029 4.029 11 O -0.391 6.391 12 N -0.305 5.305 13 C -0.068 4.068 14 C 0.225 3.775 15 O -0.511 6.511 16 N -0.209 5.209 17 C -0.465 4.465 18 H 0.095 0.905 19 C -0.211 4.211 20 N -0.560 5.560 21 Si 0.816 3.184 22 H -0.195 1.195 23 H -0.194 1.194 24 H -0.199 1.199 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.162 0.838 29 H 0.158 0.842 30 H 0.141 0.859 31 H 0.121 0.879 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.243 0.757 35 H 0.168 0.832 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.231 0.769 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.206 18.468 8.197 20.865 hybrid contribution -0.275 -1.598 0.826 1.820 sum -5.481 16.869 9.023 19.901 Atomic orbital electron populations 1.20950 0.89502 1.03813 1.03149 1.20004 0.97325 0.92119 1.00078 1.21248 0.94279 0.97954 1.01365 1.21364 0.94879 0.98085 1.00213 1.21332 1.00376 0.92870 1.01908 1.20996 0.94738 0.97869 0.98313 1.19569 0.93626 0.93769 1.00318 1.20701 0.94882 0.88953 0.93937 0.86971 1.22917 0.88811 1.00728 0.90448 1.86500 1.34941 1.94586 1.23029 1.60096 1.21182 1.10183 1.39063 1.21601 0.94161 0.90376 1.00676 1.20867 0.89559 0.84299 0.82794 1.90498 1.18077 1.80736 1.61762 1.41900 1.09591 1.15792 1.53604 1.19658 0.91422 0.97338 1.38050 0.90522 1.26020 0.98045 1.00174 0.96880 1.69666 1.12201 1.29538 1.44613 0.84940 0.77767 0.77515 0.78184 1.19549 1.19402 1.19947 0.90463 0.90868 0.89899 0.83839 0.84218 0.85859 0.87890 0.90626 0.92832 0.75667 0.83169 0.91297 0.87566 0.76892 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 9.26 71.24 0.66 -1.09 16 2 C -0.09 -2.09 5.88 -19.86 -0.12 -2.21 16 3 C -0.13 -2.67 9.70 22.27 0.22 -2.45 16 4 C -0.13 -2.80 10.05 22.27 0.22 -2.58 16 5 C -0.15 -3.92 10.05 22.27 0.22 -3.70 16 6 C -0.10 -3.14 9.29 22.27 0.21 -2.93 16 7 C -0.07 -1.97 4.61 -19.86 -0.09 -2.06 16 8 C 0.12 3.20 1.95 44.17 0.09 3.28 16 9 H 0.11 2.48 6.94 -2.39 -0.02 2.46 16 10 C 0.05 1.02 6.51 71.98 0.47 1.49 16 11 O -0.58 -13.46 12.47 -148.98 -1.86 -15.32 16 12 N -0.67 -22.94 4.71 -499.48 -2.35 -25.30 16 13 C 0.06 2.24 5.96 85.56 0.51 2.75 16 14 C 0.44 21.40 7.82 87.66 0.69 22.08 16 15 O -0.62 -35.97 15.78 -3.08 -0.05 -36.01 16 16 N -0.57 -29.76 5.29 -306.99 -1.62 -31.39 16 17 C -0.34 -19.36 9.68 84.04 0.81 -18.55 16 18 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 19 C -0.01 -0.61 5.50 84.92 0.47 -0.15 16 20 N -0.92 -49.74 13.05 21.66 0.28 -49.45 16 21 Si 0.99 43.40 29.55 68.60 2.03 45.43 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 0.97 4.96 -2.39 -0.01 0.96 16 27 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 28 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 29 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 30 H 0.12 2.95 8.06 -2.91 -0.02 2.92 16 31 H 0.10 3.72 6.84 -2.91 -0.02 3.70 16 32 H 0.08 1.17 6.32 -2.39 -0.02 1.15 16 33 H 0.05 1.04 7.35 -2.39 -0.02 1.02 16 34 H 0.39 5.44 9.12 -74.06 -0.68 4.77 16 35 H 0.35 13.22 7.17 -89.69 -0.64 12.58 16 36 H 0.07 2.06 7.36 -2.39 -0.02 2.04 16 37 H 0.11 3.31 8.06 -2.39 -0.02 3.29 16 38 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 39 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -72.69 326.30 -0.17 -72.86 By element: Atomic # 1 Polarization: 46.24 SS G_CDS: -0.95 Total: 45.29 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 4.35 Total: -6.11 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -3.69 Total: -106.14 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -1.91 Total: -51.33 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -72.69 -0.17 -72.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543839737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.017 kcal (2) G-P(sol) polarization free energy of solvation -72.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds