Wall clock time and date at job start Tue Mar 31 2020 00:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38355 * 120.40948 * 2 1 4 4 C 1.39342 * 118.42437 * 180.23874 * 3 2 1 5 5 N 1.40145 * 120.42357 * 179.75937 * 4 3 2 6 6 C 1.34773 * 119.99718 * 327.16808 * 5 4 3 7 7 O 1.21295 * 120.00226 * 354.73816 * 6 5 4 8 8 C 1.50704 * 119.99916 * 174.74156 * 6 5 4 9 9 C 1.53003 * 109.47474 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.46962 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.46793 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47306 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99267 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00128 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00149 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00141 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47085 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47365 * 119.99821 * 16 14 12 19 19 H 1.48496 * 109.47551 * 240.00509 * 16 14 12 20 20 C 1.38695 * 119.14929 * 359.48481 * 4 3 2 21 21 N 1.31917 * 120.73419 * 0.27632 * 20 4 3 22 22 C 1.32240 * 121.72046 * 359.97438 * 21 20 4 23 23 O 1.35749 * 119.60887 * 180.02562 * 22 21 20 24 24 H 1.09004 * 109.47443 * 270.25665 * 1 2 3 25 25 H 1.09004 * 109.46833 * 30.25503 * 1 2 3 26 26 H 1.09001 * 109.47445 * 150.25489 * 1 2 3 27 27 H 1.07999 * 120.78995 * 0.02562 * 3 2 1 28 28 H 0.96993 * 119.99843 * 147.17294 * 5 4 3 29 29 H 1.08997 * 109.47379 * 59.99533 * 8 6 5 30 30 H 1.09004 * 109.46993 * 299.99998 * 8 6 5 31 31 H 1.09002 * 109.46586 * 300.00007 * 9 8 6 32 32 H 1.09005 * 109.46857 * 60.00062 * 9 8 6 33 33 H 1.08994 * 109.47284 * 299.99486 * 10 9 8 34 34 H 1.08996 * 109.47076 * 60.00167 * 10 9 8 35 35 H 1.09004 * 109.46895 * 299.99958 * 11 10 9 36 36 H 1.08997 * 109.47480 * 59.99495 * 11 10 9 37 37 H 0.97000 * 119.99860 * 179.97438 * 15 14 12 38 38 H 1.07996 * 119.63409 * 180.29726 * 20 4 3 39 39 H 0.96696 * 114.00156 * 89.99756 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2073 1.1932 0.0000 4 6 3.5999 1.1450 -0.0051 5 7 4.3510 2.3281 -0.0104 6 6 3.8817 3.4213 -0.6437 7 8 2.8568 3.3552 -1.2891 8 6 4.6305 4.7258 -0.5503 9 6 3.8906 5.7974 -1.3536 10 6 4.6505 7.1218 -1.2581 11 6 3.9102 8.1935 -2.0609 12 6 4.6590 9.4980 -1.9674 13 1 5.5713 9.5568 -1.3925 14 6 4.1792 10.6162 -2.6158 15 7 3.0679 10.5446 -3.3154 16 14 5.1069 12.2334 -2.4993 17 1 6.3171 12.0503 -1.6583 18 1 5.5116 12.6710 -3.8594 19 1 4.2302 13.2642 -1.8880 20 6 4.2331 -0.0890 0.0009 21 7 3.5321 -1.2065 0.0059 22 6 2.2097 -1.1977 0.0058 23 8 1.5312 -2.3734 0.0116 24 1 -0.3634 0.0046 1.0277 25 1 -0.3633 0.8877 -0.5178 26 1 -0.3634 -0.8923 -0.5099 27 1 1.6870 2.1396 0.0004 28 1 5.2085 2.3602 0.4417 29 1 5.6347 4.5981 -0.9543 30 1 4.6952 5.0336 0.4934 31 1 3.8263 5.4893 -2.3972 32 1 2.8861 5.9252 -0.9498 33 1 4.7144 7.4297 -0.2145 34 1 5.6550 6.9943 -1.6615 35 1 3.8459 7.8859 -3.1046 36 1 2.9058 8.3209 -1.6572 37 1 2.7302 11.3315 -3.7712 38 1 5.3121 -0.1355 0.0019 39 1 1.3347 -2.7098 0.8966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588657753.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:04 Heat of formation + Delta-G solvation = -66.288323 kcal Electronic energy + Delta-G solvation = -20271.651783 eV Core-core repulsion = 16985.733053 eV Total energy + Delta-G solvation = -3285.918730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.23805 -39.79722 -37.39500 -35.19526 -34.83364 -33.91451 -32.69939 -30.57908 -29.20284 -27.58152 -25.79972 -24.00949 -22.91191 -21.86128 -20.53094 -20.06496 -19.08827 -17.94621 -17.20258 -16.57829 -16.37283 -16.16254 -15.69156 -14.58114 -14.52152 -14.23452 -14.16779 -13.80040 -13.47052 -13.18108 -13.03565 -12.68521 -12.43896 -12.21413 -12.04335 -11.79049 -11.65726 -11.04244 -11.01044 -10.61873 -10.52719 -10.48226 -10.26512 -9.78755 -9.67122 -9.52468 -9.27142 -9.01502 -8.44415 -8.33783 -5.98317 -4.00957 0.60049 0.91604 2.41051 2.71019 3.21811 3.31124 3.38507 3.42123 3.52321 4.26102 4.46208 4.50791 4.56680 4.66859 4.82408 5.08803 5.16939 5.22264 5.26221 5.34185 5.37266 5.55542 5.69422 5.77665 5.81275 5.96254 6.04165 6.19845 6.35909 6.46595 6.75825 6.93043 7.04542 7.15340 7.17442 7.58205 7.70608 7.85417 7.91322 8.02681 8.44277 9.06945 9.63027 11.13030 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046614 B = 0.002425 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.531677 B =11543.975113 C =12014.629849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.126 4.126 3 C -0.070 4.070 4 C 0.101 3.899 5 N -0.676 5.676 6 C 0.512 3.488 7 O -0.513 6.513 8 C -0.137 4.137 9 C -0.105 4.105 10 C -0.110 4.110 11 C 0.019 3.981 12 C -0.520 4.520 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.089 3.911 21 N -0.480 5.480 22 C 0.282 3.718 23 O -0.478 6.478 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.152 0.848 28 H 0.414 0.586 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.162 0.838 39 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.157 -23.254 11.466 25.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.130 4.130 3 C -0.098 4.098 4 C 0.004 3.996 5 N -0.323 5.323 6 C 0.302 3.698 7 O -0.386 6.386 8 C -0.176 4.176 9 C -0.143 4.143 10 C -0.148 4.148 11 C -0.018 4.018 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.534 5.534 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.071 4.071 21 N -0.198 5.198 22 C 0.103 3.897 23 O -0.285 6.285 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.170 0.830 28 H 0.251 0.749 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.179 0.821 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.285 -23.892 10.278 26.010 hybrid contribution 0.527 1.614 0.673 1.826 sum 0.242 -22.278 10.950 24.825 Atomic orbital electron populations 1.20697 0.89354 1.03988 1.02690 1.20870 0.98272 0.92115 1.01699 1.21526 0.92331 0.99171 0.96741 1.18853 0.91920 0.87469 1.01380 1.43727 1.23512 1.09750 1.55281 1.21446 0.85847 0.85332 0.77220 1.90734 1.24481 1.84585 1.38829 1.21839 1.00658 0.91278 1.03874 1.21489 0.99279 0.93771 0.99737 1.21648 0.98784 0.93799 1.00551 1.19103 0.95522 0.92089 0.95074 1.21308 1.09052 0.94755 1.30725 0.92685 1.25048 0.95086 0.99068 0.95417 1.69984 1.21047 1.29549 1.32869 0.86552 0.79898 0.83866 0.77763 1.19776 1.21039 1.21039 1.22246 0.99911 0.85203 0.99765 1.67093 1.08266 1.31242 1.13155 1.18902 0.86603 0.85134 0.99089 1.84797 1.73602 1.36489 1.33575 0.90827 0.90720 0.90365 0.83032 0.74921 0.88590 0.88510 0.91638 0.91679 0.93383 0.93366 0.96574 0.96580 0.93069 0.82062 0.74771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 9.81 36.00 0.35 -0.53 16 2 C -0.13 -1.31 5.91 -104.35 -0.62 -1.93 16 3 C -0.07 -0.80 8.44 -39.13 -0.33 -1.14 16 4 C 0.10 1.06 6.31 -83.48 -0.53 0.53 16 5 N -0.68 -6.08 5.36 -9.74 -0.05 -6.14 16 6 C 0.51 6.30 7.59 -10.99 -0.08 6.22 16 7 O -0.51 -8.40 13.68 5.54 0.08 -8.32 16 8 C -0.14 -1.57 5.70 -27.88 -0.16 -1.73 16 9 C -0.10 -1.74 4.50 -26.73 -0.12 -1.86 16 10 C -0.11 -2.16 5.15 -26.73 -0.14 -2.30 16 11 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 12 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 16 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 C 0.09 0.86 11.11 -17.35 -0.19 0.67 16 21 N -0.48 -5.54 10.38 -13.18 -0.14 -5.68 16 22 C 0.28 3.07 7.72 -17.14 -0.13 2.94 16 23 O -0.48 -4.32 12.62 -18.95 -0.24 -4.56 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 26 H 0.08 0.60 7.54 -51.93 -0.39 0.21 16 27 H 0.15 1.89 6.49 -52.49 -0.34 1.55 16 28 H 0.41 2.15 8.82 -40.82 -0.36 1.79 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 32 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.40 1.54 9.06 45.56 0.41 1.95 16 LS Contribution 335.29 15.07 5.05 5.05 Total: -1.00 -35.83 335.29 -6.94 -42.77 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -4.86 Total: -0.91 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -2.50 Total: -12.34 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.55 Total: -38.34 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.16 Total: -12.88 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.83 -6.94 -42.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588657753.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.519 kcal (2) G-P(sol) polarization free energy of solvation -35.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds