Wall clock time and date at job start Tue Mar 31 2020 00:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38355 * 120.40948 * 2 1 4 4 C 1.39342 * 118.42437 * 180.23874 * 3 2 1 5 5 N 1.40145 * 120.42357 * 179.75937 * 4 3 2 6 6 C 1.34773 * 119.99718 * 327.16808 * 5 4 3 7 7 O 1.21295 * 120.00226 * 354.73816 * 6 5 4 8 8 C 1.50704 * 119.99916 * 174.74156 * 6 5 4 9 9 C 1.53003 * 109.47474 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.46962 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.46793 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47306 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99267 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00128 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00149 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00141 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47085 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47365 * 119.99821 * 16 14 12 19 19 H 1.48496 * 109.47551 * 240.00509 * 16 14 12 20 20 C 1.38695 * 119.14929 * 359.48481 * 4 3 2 21 21 N 1.31917 * 120.73419 * 0.27632 * 20 4 3 22 22 C 1.32240 * 121.72046 * 359.97438 * 21 20 4 23 23 O 1.35749 * 119.60887 * 180.02562 * 22 21 20 24 24 H 1.09004 * 109.47443 * 270.25665 * 1 2 3 25 25 H 1.09004 * 109.46833 * 30.25503 * 1 2 3 26 26 H 1.09001 * 109.47445 * 150.25489 * 1 2 3 27 27 H 1.07999 * 120.78995 * 0.02562 * 3 2 1 28 28 H 0.96993 * 119.99843 * 147.17294 * 5 4 3 29 29 H 1.08997 * 109.47379 * 59.99533 * 8 6 5 30 30 H 1.09004 * 109.46993 * 299.99998 * 8 6 5 31 31 H 1.09002 * 109.46586 * 300.00007 * 9 8 6 32 32 H 1.09005 * 109.46857 * 60.00062 * 9 8 6 33 33 H 1.08994 * 109.47284 * 299.99486 * 10 9 8 34 34 H 1.08996 * 109.47076 * 60.00167 * 10 9 8 35 35 H 1.09004 * 109.46895 * 299.99958 * 11 10 9 36 36 H 1.08997 * 109.47480 * 59.99495 * 11 10 9 37 37 H 0.97000 * 119.99860 * 179.97438 * 15 14 12 38 38 H 1.07996 * 119.63409 * 180.29726 * 20 4 3 39 39 H 0.96696 * 114.00156 * 89.99756 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2073 1.1932 0.0000 4 6 3.5999 1.1450 -0.0051 5 7 4.3510 2.3281 -0.0104 6 6 3.8817 3.4213 -0.6437 7 8 2.8568 3.3552 -1.2891 8 6 4.6305 4.7258 -0.5503 9 6 3.8906 5.7974 -1.3536 10 6 4.6505 7.1218 -1.2581 11 6 3.9102 8.1935 -2.0609 12 6 4.6590 9.4980 -1.9674 13 1 5.5713 9.5568 -1.3925 14 6 4.1792 10.6162 -2.6158 15 7 3.0679 10.5446 -3.3154 16 14 5.1069 12.2334 -2.4993 17 1 6.3171 12.0503 -1.6583 18 1 5.5116 12.6710 -3.8594 19 1 4.2302 13.2642 -1.8880 20 6 4.2331 -0.0890 0.0009 21 7 3.5321 -1.2065 0.0059 22 6 2.2097 -1.1977 0.0058 23 8 1.5312 -2.3734 0.0116 24 1 -0.3634 0.0046 1.0277 25 1 -0.3633 0.8877 -0.5178 26 1 -0.3634 -0.8923 -0.5099 27 1 1.6870 2.1396 0.0004 28 1 5.2085 2.3602 0.4417 29 1 5.6347 4.5981 -0.9543 30 1 4.6952 5.0336 0.4934 31 1 3.8263 5.4893 -2.3972 32 1 2.8861 5.9252 -0.9498 33 1 4.7144 7.4297 -0.2145 34 1 5.6550 6.9943 -1.6615 35 1 3.8459 7.8859 -3.1046 36 1 2.9058 8.3209 -1.6572 37 1 2.7302 11.3315 -3.7712 38 1 5.3121 -0.1355 0.0019 39 1 1.3347 -2.7098 0.8966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588657753.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:03 Heat of formation + Delta-G solvation = -94.217311 kcal Electronic energy + Delta-G solvation = -20272.862875 eV Core-core repulsion = 16985.733053 eV Total energy + Delta-G solvation = -3287.129822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.05640 -40.69995 -38.16639 -36.67609 -35.83740 -34.72039 -34.56987 -31.90680 -30.41744 -28.31217 -27.45813 -25.06094 -24.17502 -22.94840 -21.78023 -21.39850 -19.82147 -18.80397 -18.42746 -17.99612 -17.46263 -17.14620 -16.73205 -16.50196 -15.56300 -15.29887 -15.26866 -14.55373 -14.53876 -14.29587 -13.94108 -13.88029 -13.62200 -13.58709 -13.29173 -13.00655 -12.84585 -12.72950 -12.31511 -12.15686 -12.13481 -11.87203 -11.39394 -11.35826 -11.22611 -11.00003 -10.57115 -10.55385 -10.30285 -9.22343 -8.18741 -6.30547 -0.17466 0.10543 1.40936 1.41498 1.49670 1.54895 1.89668 2.42041 2.50582 2.77635 3.14359 3.50676 3.74953 3.77964 3.86996 3.97979 4.10704 4.16109 4.42364 4.56910 4.65747 4.69612 4.71776 4.83278 4.86475 4.88397 4.98957 5.12011 5.19805 5.22855 5.34306 5.39830 5.57843 5.61577 5.79560 5.89407 6.25728 6.32857 6.59422 6.85121 6.88721 7.06858 7.39286 8.93662 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046614 B = 0.002425 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.531677 B =11543.975113 C =12014.629849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.133 4.133 3 C -0.087 4.087 4 C 0.090 3.910 5 N -0.654 5.654 6 C 0.514 3.486 7 O -0.563 6.563 8 C -0.124 4.124 9 C -0.098 4.098 10 C -0.096 4.096 11 C 0.017 3.983 12 C -0.539 4.539 13 H 0.067 0.933 14 C -0.008 4.008 15 N -0.939 5.939 16 Si 0.969 3.031 17 H -0.257 1.257 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.096 3.904 21 N -0.501 5.501 22 C 0.278 3.722 23 O -0.486 6.486 24 H 0.093 0.907 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.135 0.865 28 H 0.435 0.565 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.062 0.938 35 H -0.016 1.016 36 H -0.015 1.015 37 H 0.262 0.738 38 H 0.195 0.805 39 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.439 -23.810 13.102 27.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C -0.115 4.115 4 C -0.007 4.007 5 N -0.302 5.302 6 C 0.304 3.696 7 O -0.440 6.440 8 C -0.163 4.163 9 C -0.136 4.136 10 C -0.133 4.133 11 C -0.020 4.020 12 C -0.577 4.577 13 H 0.085 0.915 14 C -0.205 4.205 15 N -0.579 5.579 16 Si 0.793 3.207 17 H -0.180 1.180 18 H -0.206 1.206 19 H -0.205 1.205 20 C -0.064 4.064 21 N -0.219 5.219 22 C 0.099 3.901 23 O -0.295 6.295 24 H 0.112 0.888 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.153 0.847 28 H 0.276 0.724 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.002 0.998 36 H 0.003 0.997 37 H 0.071 0.929 38 H 0.212 0.788 39 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 2.034 -24.488 11.970 27.333 hybrid contribution -0.240 1.713 0.164 1.737 sum 1.794 -22.775 12.133 25.868 Atomic orbital electron populations 1.20716 0.88043 1.03720 1.03904 1.21057 0.99357 0.91767 1.01540 1.21552 0.93253 0.98924 0.97736 1.18944 0.91697 0.88181 1.01887 1.43429 1.23982 1.08455 1.54313 1.21540 0.85128 0.86214 0.76735 1.90733 1.26687 1.85338 1.41254 1.21703 1.00842 0.88989 1.04801 1.21273 0.98736 0.94179 0.99455 1.21441 0.98693 0.93098 1.00096 1.19076 0.94798 0.94013 0.94131 1.21795 1.09519 0.95750 1.30628 0.91500 1.26091 0.96005 1.03498 0.94919 1.70138 1.22961 1.30869 1.33960 0.85346 0.78837 0.78486 0.78050 1.18014 1.20603 1.20544 1.22715 1.01257 0.84267 0.98130 1.67172 1.08668 1.32043 1.14046 1.19041 0.86712 0.85653 0.98709 1.84741 1.73365 1.35827 1.35601 0.88839 0.91563 0.89939 0.84673 0.72410 0.85518 0.85436 0.93827 0.93632 0.91874 0.91945 0.99790 0.99681 0.92899 0.78828 0.72282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 9.81 71.24 0.70 -0.98 16 2 C -0.13 -2.75 5.91 -19.69 -0.12 -2.87 16 3 C -0.09 -2.00 8.44 22.56 0.19 -1.81 16 4 C 0.09 1.77 6.31 38.19 0.24 2.01 16 5 N -0.65 -10.32 5.36 -303.10 -1.62 -11.94 16 6 C 0.51 11.99 7.59 87.66 0.67 12.65 16 7 O -0.56 -18.82 13.68 -3.08 -0.04 -18.87 16 8 C -0.12 -2.53 5.70 29.85 0.17 -2.36 16 9 C -0.10 -3.25 4.50 30.59 0.14 -3.11 16 10 C -0.10 -3.69 5.15 30.59 0.16 -3.53 16 11 C 0.02 0.91 4.97 29.85 0.15 1.06 16 12 C -0.54 -30.71 9.11 25.60 0.23 -30.48 16 13 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 14 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 15 N -0.94 -58.64 13.29 21.45 0.28 -58.35 16 16 Si 0.97 44.33 29.54 68.60 2.03 46.36 16 17 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 C 0.10 1.67 11.11 84.79 0.94 2.61 16 21 N -0.50 -10.83 10.38 -308.43 -3.20 -14.03 16 22 C 0.28 5.80 7.72 84.78 0.65 6.45 16 23 O -0.49 -8.19 12.62 -90.74 -1.14 -9.33 16 24 H 0.09 1.06 8.14 -2.38 -0.02 1.05 16 25 H 0.07 1.15 8.10 -2.38 -0.02 1.13 16 26 H 0.08 1.21 7.54 -2.39 -0.02 1.19 16 27 H 0.14 3.55 6.49 -2.91 -0.02 3.54 16 28 H 0.44 2.96 8.82 -92.71 -0.82 2.14 16 29 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.13 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.04 1.61 8.10 -2.39 -0.02 1.59 16 32 H 0.04 1.66 8.10 -2.38 -0.02 1.64 16 33 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 35 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 36 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 37 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.20 1.89 8.06 -2.91 -0.02 1.87 16 39 H 0.42 2.61 9.06 -74.06 -0.67 1.94 16 Total: -1.00 -80.46 335.29 0.47 -79.99 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -0.42 Total: 6.55 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 4.59 Total: -20.38 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -4.54 Total: -84.33 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -1.19 Total: -28.20 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -80.46 0.47 -79.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588657753.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.227 kcal (2) G-P(sol) polarization free energy of solvation -80.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds