Wall clock time and date at job start Tue Mar 31 2020 00:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38089 * 119.52265 * 2 1 4 4 C 1.38771 * 119.35245 * 179.75531 * 3 2 1 5 5 C 1.38796 * 118.44908 * 0.51247 * 4 3 2 6 6 O 1.35978 * 120.50071 * 179.73278 * 5 4 3 7 7 C 1.39476 * 119.00564 * 359.75351 * 5 4 3 8 8 N 1.39573 * 119.72403 * 180.02562 * 7 5 4 9 9 C 1.34787 * 119.99442 * 179.97438 * 8 7 5 10 10 O 1.21275 * 120.00167 * 359.97438 * 9 8 7 11 11 C 1.50704 * 119.99560 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.46551 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.46844 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.47098 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47141 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99535 * 359.97438 * 15 14 13 17 17 C 1.37869 * 119.99869 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00189 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99633 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47371 * 59.99965 * 19 17 15 21 21 H 1.48504 * 109.46908 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47341 * 299.99250 * 19 17 15 23 23 N 1.31956 * 119.52065 * 180.27620 * 2 1 3 24 24 H 1.09001 * 109.46953 * 269.72223 * 1 2 3 25 25 H 1.09000 * 109.47318 * 29.71821 * 1 2 3 26 26 H 1.09000 * 109.47161 * 149.72451 * 1 2 3 27 27 H 1.07999 * 120.31802 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.77434 * 180.24913 * 4 3 2 29 29 H 0.96696 * 113.99997 * 270.02636 * 6 5 4 30 30 H 0.96996 * 120.00443 * 359.97438 * 8 7 5 31 31 H 1.08998 * 109.46716 * 299.99604 * 11 9 8 32 32 H 1.08997 * 109.47295 * 59.99631 * 11 9 8 33 33 H 1.08998 * 109.47364 * 299.99301 * 12 11 9 34 34 H 1.09005 * 109.47393 * 60.00149 * 12 11 9 35 35 H 1.08998 * 109.47024 * 300.00066 * 13 12 11 36 36 H 1.09005 * 109.46549 * 60.00189 * 13 12 11 37 37 H 1.08999 * 109.46808 * 300.00258 * 14 13 12 38 38 H 1.08998 * 109.46999 * 60.00026 * 14 13 12 39 39 H 0.97006 * 119.99787 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.2016 0.0000 4 6 3.5752 1.1975 0.0052 5 6 4.2328 -0.0248 -0.0007 6 8 5.5916 -0.0775 -0.0015 7 6 3.4790 -1.1983 -0.0063 8 7 4.1248 -2.4356 -0.0118 9 6 3.4017 -3.5731 -0.0167 10 8 2.1901 -3.5214 -0.0159 11 6 4.0990 -4.9091 -0.0219 12 6 3.0561 -6.0285 -0.0262 13 6 3.7640 -7.3850 -0.0322 14 6 2.7211 -8.5045 -0.0372 15 6 3.4183 -9.8405 -0.0424 16 1 4.4973 -9.8865 -0.0427 17 6 2.6786 -11.0040 -0.0480 18 7 1.3647 -10.9480 -0.0482 19 14 3.5429 -12.6601 -0.0553 20 1 4.3922 -12.7806 1.1569 21 1 2.5307 -13.7467 -0.0599 22 1 4.3928 -12.7696 -1.2681 23 7 2.1573 -1.1482 -0.0055 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3634 0.8925 -0.5094 26 1 -0.3633 -0.8875 -0.5181 27 1 1.6449 2.1354 0.0004 28 1 4.1306 2.1238 0.0093 29 1 5.9843 -0.0882 -0.8850 30 1 5.0939 -2.4770 -0.0120 31 1 4.7229 -4.9898 -0.9121 32 1 4.7224 -4.9971 0.8678 33 1 2.4326 -5.9477 0.8642 34 1 2.4324 -5.9407 -0.9159 35 1 4.3872 -7.4656 -0.9228 36 1 4.3880 -7.4731 0.8572 37 1 2.0975 -8.4240 0.8532 38 1 2.0975 -8.4162 -0.9267 39 1 0.8443 -11.7667 -0.0517 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588675038.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:01 Heat of formation + Delta-G solvation = -57.040158 kcal Electronic energy + Delta-G solvation = -20465.075135 eV Core-core repulsion = 17179.557436 eV Total energy + Delta-G solvation = -3285.517699 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.20052 -39.32801 -37.70879 -35.28459 -34.71211 -32.65496 -32.23514 -31.54311 -29.65972 -27.24147 -25.75903 -23.93625 -22.62769 -22.08354 -20.35455 -19.97004 -18.92021 -17.66174 -17.29385 -16.18088 -16.16667 -15.96421 -15.63700 -14.80010 -14.50568 -14.42200 -13.92744 -13.90401 -13.69255 -12.86113 -12.68838 -12.61363 -12.42005 -12.12801 -11.70459 -11.70225 -11.55556 -10.96677 -10.82463 -10.52999 -10.52312 -10.40776 -10.24416 -9.82800 -9.59656 -9.31794 -9.09558 -8.95475 -8.33228 -8.28760 -5.93591 -3.96244 0.69073 0.97613 2.67642 2.69328 3.36439 3.40765 3.42984 3.43296 3.73167 4.06701 4.43012 4.50136 4.64833 4.80291 4.96932 5.13035 5.28839 5.34106 5.34539 5.41667 5.44295 5.63730 5.73558 5.77237 5.84992 6.06111 6.13419 6.28818 6.38248 6.55136 6.84269 6.99298 7.06644 7.13756 7.21845 7.75434 7.83459 7.91727 8.07797 8.23350 8.49349 9.11295 9.67298 11.17723 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035763 B = 0.002661 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.753111 B =10519.428922 C =11263.285707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.155 3.845 3 C -0.196 4.196 4 C -0.070 4.070 5 C 0.003 3.997 6 O -0.488 6.488 7 C 0.354 3.646 8 N -0.663 5.663 9 C 0.499 3.501 10 O -0.464 6.464 11 C -0.136 4.136 12 C -0.104 4.104 13 C -0.110 4.110 14 C 0.020 3.980 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 N -0.462 5.462 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.138 0.862 28 H 0.142 0.858 29 H 0.385 0.615 30 H 0.419 0.581 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.155 27.698 -1.522 28.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.017 3.983 3 C -0.218 4.218 4 C -0.096 4.096 5 C -0.047 4.047 6 O -0.296 6.296 7 C 0.121 3.879 8 N -0.311 5.311 9 C 0.286 3.714 10 O -0.332 6.332 11 C -0.176 4.176 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.017 4.017 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 N -0.179 5.179 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.156 0.844 28 H 0.160 0.840 29 H 0.241 0.759 30 H 0.256 0.744 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.593 26.698 -0.913 27.106 hybrid contribution 1.656 -0.128 -0.483 1.729 sum 6.249 26.570 -1.396 27.331 Atomic orbital electron populations 1.20742 0.88312 1.03717 1.03415 1.21282 0.97298 0.87259 0.92506 1.21808 0.93946 0.99427 1.06594 1.21649 0.94607 0.97315 0.96027 1.18784 0.83720 0.91616 1.10622 1.84920 1.15161 1.96043 1.33441 1.18978 0.89027 0.85508 0.94393 1.43915 1.11002 1.03367 1.72786 1.21464 0.88495 0.85483 0.75948 1.90810 1.13440 1.86475 1.42449 1.21834 1.00617 0.90877 1.04266 1.21478 0.96616 0.92975 1.03126 1.21651 0.99428 0.93566 1.00113 1.19090 0.93704 0.91567 0.97338 1.21245 0.92904 0.91257 1.50536 0.92807 1.25039 0.94827 0.99229 0.95459 1.69966 1.04717 1.27955 1.50839 0.86671 0.79227 0.83610 0.78540 1.20288 1.21321 1.20290 1.67594 1.06118 1.28915 1.15278 0.90110 0.90595 0.89898 0.84433 0.84013 0.75943 0.74389 0.88873 0.88819 0.91649 0.91669 0.93438 0.93416 0.96571 0.96576 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.17 36.01 0.37 -0.56 16 2 C 0.16 1.76 6.78 -82.59 -0.56 1.20 16 3 C -0.20 -1.67 9.72 -39.44 -0.38 -2.05 16 4 C -0.07 -0.58 10.12 -39.18 -0.40 -0.97 16 5 C 0.00 0.03 6.76 -38.91 -0.26 -0.24 16 6 O -0.49 -3.61 12.77 -19.67 -0.25 -3.86 16 7 C 0.35 4.51 7.45 -154.44 -1.15 3.36 16 8 N -0.66 -7.75 5.39 -11.29 -0.06 -7.81 16 9 C 0.50 7.38 7.79 -10.98 -0.09 7.29 16 10 O -0.46 -8.86 14.24 5.56 0.08 -8.78 16 11 C -0.14 -1.81 5.70 -27.88 -0.16 -1.97 16 12 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 13 C -0.11 -2.27 5.15 -26.72 -0.14 -2.41 16 14 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 15 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 16 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 19 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 N -0.46 -6.76 7.79 -8.45 -0.07 -6.83 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 28 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 29 H 0.39 1.07 9.06 45.56 0.41 1.48 16 30 H 0.42 3.39 8.04 -40.82 -0.33 3.06 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 34 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 336.68 15.07 5.07 5.07 Total: -1.00 -37.02 336.68 -7.89 -44.91 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -4.94 Total: -0.88 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -3.44 Total: -11.84 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.61 Total: -41.63 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.17 Total: -12.64 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.02 -7.89 -44.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588675038.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.132 kcal (2) G-P(sol) polarization free energy of solvation -37.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds