Wall clock time and date at job start Tue Mar 31 2020 00:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38089 * 119.52265 * 2 1 4 4 C 1.38771 * 119.35245 * 179.75531 * 3 2 1 5 5 C 1.38796 * 118.44908 * 0.51247 * 4 3 2 6 6 O 1.35978 * 120.50071 * 179.73278 * 5 4 3 7 7 C 1.39476 * 119.00564 * 359.75351 * 5 4 3 8 8 N 1.39573 * 119.72403 * 180.02562 * 7 5 4 9 9 C 1.34787 * 119.99442 * 179.97438 * 8 7 5 10 10 O 1.21275 * 120.00167 * 359.97438 * 9 8 7 11 11 C 1.50704 * 119.99560 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.46551 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.46844 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.47098 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47141 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99535 * 359.97438 * 15 14 13 17 17 C 1.37869 * 119.99869 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00189 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99633 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47371 * 59.99965 * 19 17 15 21 21 H 1.48504 * 109.46908 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47341 * 299.99250 * 19 17 15 23 23 N 1.31956 * 119.52065 * 180.27620 * 2 1 3 24 24 H 1.09001 * 109.46953 * 269.72223 * 1 2 3 25 25 H 1.09000 * 109.47318 * 29.71821 * 1 2 3 26 26 H 1.09000 * 109.47161 * 149.72451 * 1 2 3 27 27 H 1.07999 * 120.31802 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.77434 * 180.24913 * 4 3 2 29 29 H 0.96696 * 113.99997 * 270.02636 * 6 5 4 30 30 H 0.96996 * 120.00443 * 359.97438 * 8 7 5 31 31 H 1.08998 * 109.46716 * 299.99604 * 11 9 8 32 32 H 1.08997 * 109.47295 * 59.99631 * 11 9 8 33 33 H 1.08998 * 109.47364 * 299.99301 * 12 11 9 34 34 H 1.09005 * 109.47393 * 60.00149 * 12 11 9 35 35 H 1.08998 * 109.47024 * 300.00066 * 13 12 11 36 36 H 1.09005 * 109.46549 * 60.00189 * 13 12 11 37 37 H 1.08999 * 109.46808 * 300.00258 * 14 13 12 38 38 H 1.08998 * 109.46999 * 60.00026 * 14 13 12 39 39 H 0.97006 * 119.99787 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.2016 0.0000 4 6 3.5752 1.1975 0.0052 5 6 4.2328 -0.0248 -0.0007 6 8 5.5916 -0.0775 -0.0015 7 6 3.4790 -1.1983 -0.0063 8 7 4.1248 -2.4356 -0.0118 9 6 3.4017 -3.5731 -0.0167 10 8 2.1901 -3.5214 -0.0159 11 6 4.0990 -4.9091 -0.0219 12 6 3.0561 -6.0285 -0.0262 13 6 3.7640 -7.3850 -0.0322 14 6 2.7211 -8.5045 -0.0372 15 6 3.4183 -9.8405 -0.0424 16 1 4.4973 -9.8865 -0.0427 17 6 2.6786 -11.0040 -0.0480 18 7 1.3647 -10.9480 -0.0482 19 14 3.5429 -12.6601 -0.0553 20 1 4.3922 -12.7806 1.1569 21 1 2.5307 -13.7467 -0.0599 22 1 4.3928 -12.7696 -1.2681 23 7 2.1573 -1.1482 -0.0055 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3634 0.8925 -0.5094 26 1 -0.3633 -0.8875 -0.5181 27 1 1.6449 2.1354 0.0004 28 1 4.1306 2.1238 0.0093 29 1 5.9843 -0.0882 -0.8850 30 1 5.0939 -2.4770 -0.0120 31 1 4.7229 -4.9898 -0.9121 32 1 4.7224 -4.9971 0.8678 33 1 2.4326 -5.9477 0.8642 34 1 2.4324 -5.9407 -0.9159 35 1 4.3872 -7.4656 -0.9228 36 1 4.3880 -7.4731 0.8572 37 1 2.0975 -8.4240 0.8532 38 1 2.0975 -8.4162 -0.9267 39 1 0.8443 -11.7667 -0.0517 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588675038.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:01 Heat of formation + Delta-G solvation = -83.885465 kcal Electronic energy + Delta-G solvation = -20466.239235 eV Core-core repulsion = 17179.557436 eV Total energy + Delta-G solvation = -3286.681799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.02993 -40.35718 -38.35089 -36.74606 -35.96373 -34.62561 -32.93243 -32.51982 -31.28677 -28.21369 -27.31099 -25.11854 -23.75651 -23.23142 -21.81253 -21.30877 -19.59387 -18.56377 -18.35594 -18.23316 -17.11794 -16.92157 -16.56341 -16.50459 -15.75966 -15.41435 -15.11885 -14.93859 -14.53190 -14.32944 -13.92210 -13.62730 -13.50239 -13.30948 -13.27636 -13.10444 -12.78787 -12.38775 -12.27993 -12.17118 -12.14390 -11.70110 -11.40569 -11.38053 -11.27213 -11.04076 -10.61175 -10.54598 -10.01046 -9.12130 -8.18644 -6.31138 -0.05887 0.25957 1.40112 1.44408 1.52205 1.64340 1.81143 2.41975 2.70745 3.04351 3.13946 3.28551 3.75300 3.82792 3.97568 4.09243 4.12446 4.31097 4.46876 4.62527 4.66416 4.73125 4.77188 4.80216 4.85838 4.98606 5.05269 5.13024 5.16987 5.27746 5.32579 5.37289 5.56156 5.68638 5.77643 5.87834 6.19562 6.25084 6.68129 6.87311 6.96782 7.31561 7.38560 8.93542 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035763 B = 0.002661 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.753111 B =10519.428922 C =11263.285707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.122 3.878 3 C -0.179 4.179 4 C -0.070 4.070 5 C 0.018 3.982 6 O -0.489 6.489 7 C 0.315 3.685 8 N -0.649 5.649 9 C 0.500 3.500 10 O -0.521 6.521 11 C -0.123 4.123 12 C -0.096 4.096 13 C -0.095 4.095 14 C 0.019 3.981 15 C -0.543 4.543 16 H 0.067 0.933 17 C -0.007 4.007 18 N -0.939 5.939 19 Si 0.970 3.030 20 H -0.264 1.264 21 H -0.285 1.285 22 H -0.264 1.264 23 N -0.511 5.511 24 H 0.082 0.918 25 H 0.108 0.892 26 H 0.054 0.946 27 H 0.173 0.827 28 H 0.177 0.823 29 H 0.409 0.591 30 H 0.435 0.565 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.041 0.959 34 H 0.043 0.957 35 H 0.063 0.937 36 H 0.062 0.938 37 H -0.017 1.017 38 H -0.016 1.016 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.177 29.453 -1.658 30.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.015 4.015 3 C -0.199 4.199 4 C -0.096 4.096 5 C -0.032 4.032 6 O -0.300 6.300 7 C 0.082 3.918 8 N -0.299 5.299 9 C 0.287 3.713 10 O -0.393 6.393 11 C -0.162 4.162 12 C -0.134 4.134 13 C -0.132 4.132 14 C -0.018 4.018 15 C -0.581 4.581 16 H 0.085 0.915 17 C -0.205 4.205 18 N -0.579 5.579 19 Si 0.794 3.206 20 H -0.189 1.189 21 H -0.211 1.211 22 H -0.188 1.188 23 N -0.228 5.228 24 H 0.101 0.899 25 H 0.126 0.874 26 H 0.073 0.927 27 H 0.191 0.809 28 H 0.194 0.806 29 H 0.268 0.732 30 H 0.275 0.725 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.002 0.998 38 H 0.003 0.997 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.680 28.500 -1.065 29.536 hybrid contribution 0.713 -0.548 -0.448 1.005 sum 8.393 27.952 -1.513 29.225 Atomic orbital electron populations 1.20779 0.87563 1.03927 1.03604 1.21707 0.98212 0.87704 0.93905 1.22172 0.94386 0.99581 1.03800 1.22076 0.94677 0.97969 0.94888 1.18798 0.84522 0.91076 1.08853 1.84860 1.13763 1.95902 1.35483 1.19290 0.89170 0.86450 0.96846 1.43622 1.11587 1.02624 1.72018 1.21640 0.87908 0.86666 0.75043 1.90796 1.15755 1.87314 1.45455 1.21700 0.99195 0.88203 1.07147 1.21254 0.97351 0.93748 1.01069 1.21443 0.97856 0.92448 1.01474 1.19052 0.94591 0.93936 0.94267 1.21732 0.93728 0.92254 1.50343 0.91478 1.26108 0.95544 1.04038 0.94764 1.70133 1.06682 1.29267 1.51838 0.85426 0.78073 0.77715 0.79375 1.18898 1.21092 1.18825 1.67464 1.07682 1.31202 1.16495 0.89903 0.87361 0.92655 0.80928 0.80552 0.73237 0.72450 0.85672 0.86013 0.93966 0.93783 0.91822 0.91966 0.99832 0.99736 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.85 10.17 71.24 0.72 -1.12 16 2 C 0.12 2.75 6.78 42.51 0.29 3.04 16 3 C -0.18 -2.59 9.72 22.36 0.22 -2.37 16 4 C -0.07 -0.93 10.12 22.53 0.23 -0.70 16 5 C 0.02 0.31 6.76 22.70 0.15 0.46 16 6 O -0.49 -5.68 12.77 -93.30 -1.19 -6.87 16 7 C 0.31 7.90 7.45 132.99 0.99 8.89 16 8 N -0.65 -14.73 5.39 -308.02 -1.66 -16.39 16 9 C 0.50 14.93 7.79 87.66 0.68 15.61 16 10 O -0.52 -21.14 14.24 -3.01 -0.04 -21.19 16 11 C -0.12 -3.12 5.70 29.85 0.17 -2.95 16 12 C -0.10 -3.56 4.50 30.60 0.14 -3.42 16 13 C -0.09 -3.91 5.15 30.60 0.16 -3.75 16 14 C 0.02 1.04 4.97 29.85 0.15 1.19 16 15 C -0.54 -31.81 9.11 25.60 0.23 -31.57 16 16 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 17 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 18 N -0.94 -59.85 13.29 21.44 0.28 -59.56 16 19 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 20 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 23 N -0.51 -15.45 7.79 -180.66 -1.41 -16.86 16 24 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.11 1.15 8.07 -2.39 -0.02 1.13 16 26 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 27 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 28 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 29 H 0.41 0.83 9.06 -74.06 -0.67 0.16 16 30 H 0.43 6.20 8.04 -92.71 -0.75 5.45 16 31 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 34 H 0.04 1.79 8.10 -2.38 -0.02 1.77 16 35 H 0.06 2.42 8.14 -2.39 -0.02 2.41 16 36 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 37 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 38 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 39 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -85.60 336.68 2.25 -83.35 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -0.35 Total: 6.98 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 4.59 Total: -16.67 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -2.78 Total: -92.81 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -1.23 Total: -28.06 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -85.60 2.25 -83.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588675038.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.537 kcal (2) G-P(sol) polarization free energy of solvation -85.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds