Wall clock time and date at job start Mon Mar 30 2020 23:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00043 * 2 1 4 4 H 1.48502 * 109.47050 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47451 * 300.00627 * 3 2 1 6 6 H 1.48500 * 109.47111 * 60.00457 * 3 2 1 7 7 C 1.37874 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99796 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00484 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47347 * 180.02562 * 9 7 2 11 11 C 1.46504 * 120.00230 * 270.00230 * 10 9 7 12 12 C 1.52993 * 109.47195 * 270.00283 * 11 10 9 13 13 C 1.53010 * 117.49737 * 243.62303 * 12 11 10 14 14 C 1.52997 * 117.50218 * 175.00051 * 12 11 10 15 15 C 1.34773 * 119.99715 * 90.00247 * 10 9 7 16 16 O 1.21285 * 120.00294 * 0.02562 * 15 10 9 17 17 C 1.50702 * 120.00084 * 179.97438 * 15 10 9 18 18 C 1.52991 * 109.47347 * 180.02562 * 17 15 10 19 19 C 1.50702 * 109.47347 * 179.97438 * 18 17 15 20 20 C 1.41379 * 126.80093 * 124.70715 * 19 18 17 21 21 C 1.35446 * 103.98652 * 180.26598 * 20 19 18 22 22 O 1.34044 * 106.44743 * 0.02562 * 21 20 19 23 23 N 1.20918 * 111.56370 * 359.97438 * 22 21 20 24 24 H 0.96998 * 120.00008 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46665 * 60.00575 * 9 7 2 26 26 H 1.08998 * 109.47303 * 300.00983 * 9 7 2 27 27 H 1.08999 * 109.46652 * 30.00259 * 11 10 9 28 28 H 1.08999 * 109.46773 * 149.99655 * 11 10 9 29 29 H 1.09003 * 115.55415 * 29.32315 * 12 11 10 30 30 H 1.08993 * 117.49727 * 359.97438 * 13 12 11 31 31 H 1.08996 * 117.49861 * 145.02310 * 13 12 11 32 32 H 1.08996 * 117.50352 * 214.97864 * 14 12 11 33 33 H 1.09007 * 117.49514 * 359.97438 * 14 12 11 34 34 H 1.09006 * 109.46736 * 59.99884 * 17 15 10 35 35 H 1.08999 * 109.47100 * 300.00702 * 17 15 10 36 36 H 1.09006 * 109.47345 * 60.00198 * 18 17 15 37 37 H 1.08999 * 109.47545 * 300.00371 * 18 17 15 38 38 H 1.08001 * 128.00721 * 0.25149 * 20 19 18 39 39 H 1.08004 * 126.77907 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6791 -4.1694 -1.2693 12 6 1.7484 -5.3005 -1.7110 13 6 2.3404 -6.7087 -1.7993 14 6 2.0088 -5.9366 -3.0779 15 6 2.6408 -4.1248 1.1667 16 8 2.2464 -3.6642 2.2170 17 6 3.6197 -5.2707 1.1668 18 6 3.9506 -5.6587 2.6092 19 6 4.9290 -6.8049 2.6093 20 6 6.1866 -6.8449 3.2540 21 6 6.6714 -8.0726 2.9500 22 8 5.7436 -8.6691 2.1883 23 7 4.7863 -7.9520 2.0107 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5570 0.8896 27 1 2.6869 -3.3877 -2.0288 28 1 3.6886 -4.5594 -1.1388 29 1 0.7115 -5.2096 -1.3876 30 1 3.3929 -6.8291 -1.5431 31 1 1.6929 -7.5444 -1.5339 32 1 1.1433 -6.2644 -3.6537 33 1 2.8430 -5.5488 -3.6627 34 1 4.5323 -4.9689 0.6527 35 1 3.1790 -6.1250 0.6530 36 1 3.0378 -5.9606 3.1228 37 1 4.3911 -4.8045 3.1233 38 1 6.6528 -6.0748 3.8506 39 1 7.6189 -8.4885 3.2595 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590444435.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:53 Heat of formation + Delta-G solvation = 43.289382 kcal Electronic energy + Delta-G solvation = -21459.782514 eV Core-core repulsion = 18178.615430 eV Total energy + Delta-G solvation = -3281.167084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.99583 -39.26417 -37.17276 -35.32619 -34.34776 -32.58050 -32.10300 -31.06941 -27.95242 -26.40232 -24.98696 -23.20932 -22.50525 -22.23944 -20.74742 -20.55789 -18.33275 -17.88886 -17.56961 -16.49910 -16.46286 -15.38107 -15.36150 -14.83707 -14.73374 -14.23111 -14.06945 -13.46959 -13.12392 -13.00920 -12.41628 -12.40250 -12.09661 -11.79101 -11.55239 -11.41015 -11.37786 -11.20340 -10.89333 -10.81611 -10.59104 -10.30873 -10.09016 -10.05695 -9.78396 -9.69658 -9.58484 -8.85887 -8.42692 -7.65640 -6.03290 -4.07834 1.41359 2.17356 3.17950 3.30022 3.37058 3.40208 3.45914 3.81252 4.02622 4.18528 4.44008 4.51285 4.91841 5.04018 5.05537 5.08442 5.17721 5.25902 5.30991 5.34556 5.43423 5.53010 5.60396 5.73816 5.76610 5.92027 5.93248 6.02706 6.09850 6.14535 6.22792 6.25965 6.49597 7.08836 7.46563 7.56709 7.93388 8.21550 8.25059 8.44068 8.91521 9.11078 9.57273 11.04880 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016865 B = 0.004616 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.827050 B = 6063.834022 C = 7215.483049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.245 3.755 10 N -0.594 5.594 11 C 0.143 3.857 12 C -0.165 4.165 13 C -0.183 4.183 14 C -0.177 4.177 15 C 0.509 3.491 16 O -0.543 6.543 17 C -0.136 4.136 18 C -0.027 4.027 19 C 0.024 3.976 20 C -0.231 4.231 21 C -0.067 4.067 22 O 0.095 5.905 23 N -0.363 5.363 24 H 0.262 0.738 25 H 0.032 0.968 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.171 0.829 39 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.023 -15.972 0.195 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.075 0.925 9 C 0.126 3.874 10 N -0.325 5.325 11 C 0.018 3.982 12 C -0.185 4.185 13 C -0.220 4.220 14 C -0.214 4.214 15 C 0.295 3.705 16 O -0.421 6.421 17 C -0.177 4.177 18 C -0.066 4.066 19 C -0.134 4.134 20 C -0.252 4.252 21 C -0.148 4.148 22 O 0.029 5.971 23 N -0.068 5.068 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.126 0.874 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.189 0.811 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 10.671 -16.117 -0.010 19.330 hybrid contribution 1.057 1.460 0.419 1.851 sum 11.728 -14.657 0.409 18.776 Atomic orbital electron populations 1.69945 1.05983 1.26853 1.50587 1.24932 0.94865 0.99185 0.95123 0.86456 0.79986 0.83469 0.77580 1.19834 1.20985 1.20888 1.21470 0.93355 0.90685 1.50846 0.92453 1.19288 0.87542 0.82155 0.98414 1.48171 1.45658 1.34655 1.03981 1.21010 0.95092 0.94626 0.87456 1.22929 1.01432 0.93964 1.00149 1.23036 1.01498 0.95210 1.02241 1.22894 1.03318 1.04468 0.90738 1.20230 0.82323 0.83686 0.84220 1.90666 1.58645 1.61915 1.30914 1.21684 0.99836 0.98763 0.97418 1.19775 0.96709 0.92705 0.97392 1.23828 0.96777 0.95192 0.97652 1.22822 0.96293 0.99478 1.06598 1.25991 0.97373 0.94173 0.97275 1.84843 1.20941 1.38489 1.52808 1.73846 1.07413 1.04468 1.21037 0.92800 0.94969 0.93872 0.89516 0.91535 0.87413 0.88955 0.89155 0.89015 0.88822 0.89691 0.88707 0.89123 0.88789 0.81128 0.76928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -14.90 9.39 -34.44 -0.32 -15.22 16 8 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 9 C 0.25 6.43 5.16 -5.20 -0.03 6.41 16 10 N -0.59 -12.63 2.46 -175.06 -0.43 -13.06 16 11 C 0.14 2.38 5.49 -4.04 -0.02 2.36 16 12 C -0.17 -2.42 5.95 -90.62 -0.54 -2.96 16 13 C -0.18 -2.24 9.18 -26.72 -0.25 -2.49 16 14 C -0.18 -2.11 10.25 -26.73 -0.27 -2.38 16 15 C 0.51 10.61 7.67 -10.99 -0.08 10.52 16 16 O -0.54 -13.55 15.56 5.55 0.09 -13.47 16 17 C -0.14 -2.12 4.22 -27.89 -0.12 -2.24 16 18 C -0.03 -0.40 5.10 -27.89 -0.14 -0.54 16 19 C 0.02 0.31 6.59 -82.10 -0.54 -0.23 16 20 C -0.23 -2.25 11.12 -39.38 -0.44 -2.68 16 21 C -0.07 -0.53 12.30 29.74 0.37 -0.16 16 22 O 0.10 1.06 11.20 17.17 0.19 1.25 16 23 N -0.36 -4.89 12.06 33.42 0.40 -4.48 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 26 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 27 H 0.09 1.50 8.07 -51.93 -0.42 1.08 16 28 H 0.07 0.96 6.17 -51.93 -0.32 0.64 16 29 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 30 H 0.09 1.09 7.87 -51.93 -0.41 0.68 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.21 7.40 -51.93 -0.38 0.83 16 35 H 0.09 1.41 6.84 -51.93 -0.36 1.05 16 36 H 0.09 1.39 8.10 -51.93 -0.42 0.97 16 37 H 0.09 1.35 8.09 -51.93 -0.42 0.93 16 38 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.21 0.66 8.06 -52.48 -0.42 0.24 16 LS Contribution 336.15 15.07 5.07 5.07 Total: -1.00 -33.68 336.15 -7.07 -40.74 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.62 Total: 1.02 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -2.49 Total: -7.98 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.71 Total: -43.49 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.28 Total: -12.22 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.68 -7.07 -40.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590444435.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.033 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds