Wall clock time and date at job start Mon Mar 30 2020 23:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00043 * 2 1 4 4 H 1.48502 * 109.47050 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47451 * 300.00627 * 3 2 1 6 6 H 1.48500 * 109.47111 * 60.00457 * 3 2 1 7 7 C 1.37874 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99796 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00484 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47347 * 180.02562 * 9 7 2 11 11 C 1.46504 * 120.00230 * 270.00230 * 10 9 7 12 12 C 1.52993 * 109.47195 * 270.00283 * 11 10 9 13 13 C 1.53010 * 117.49737 * 243.62303 * 12 11 10 14 14 C 1.52997 * 117.50218 * 175.00051 * 12 11 10 15 15 C 1.34773 * 119.99715 * 90.00247 * 10 9 7 16 16 O 1.21285 * 120.00294 * 0.02562 * 15 10 9 17 17 C 1.50702 * 120.00084 * 179.97438 * 15 10 9 18 18 C 1.52991 * 109.47347 * 180.02562 * 17 15 10 19 19 C 1.50702 * 109.47347 * 179.97438 * 18 17 15 20 20 C 1.41379 * 126.80093 * 124.70715 * 19 18 17 21 21 C 1.35446 * 103.98652 * 180.26598 * 20 19 18 22 22 O 1.34044 * 106.44743 * 0.02562 * 21 20 19 23 23 N 1.20918 * 111.56370 * 359.97438 * 22 21 20 24 24 H 0.96998 * 120.00008 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46665 * 60.00575 * 9 7 2 26 26 H 1.08998 * 109.47303 * 300.00983 * 9 7 2 27 27 H 1.08999 * 109.46652 * 30.00259 * 11 10 9 28 28 H 1.08999 * 109.46773 * 149.99655 * 11 10 9 29 29 H 1.09003 * 115.55415 * 29.32315 * 12 11 10 30 30 H 1.08993 * 117.49727 * 359.97438 * 13 12 11 31 31 H 1.08996 * 117.49861 * 145.02310 * 13 12 11 32 32 H 1.08996 * 117.50352 * 214.97864 * 14 12 11 33 33 H 1.09007 * 117.49514 * 359.97438 * 14 12 11 34 34 H 1.09006 * 109.46736 * 59.99884 * 17 15 10 35 35 H 1.08999 * 109.47100 * 300.00702 * 17 15 10 36 36 H 1.09006 * 109.47345 * 60.00198 * 18 17 15 37 37 H 1.08999 * 109.47545 * 300.00371 * 18 17 15 38 38 H 1.08001 * 128.00721 * 0.25149 * 20 19 18 39 39 H 1.08004 * 126.77907 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6791 -4.1694 -1.2693 12 6 1.7484 -5.3005 -1.7110 13 6 2.3404 -6.7087 -1.7993 14 6 2.0088 -5.9366 -3.0779 15 6 2.6408 -4.1248 1.1667 16 8 2.2464 -3.6642 2.2170 17 6 3.6197 -5.2707 1.1668 18 6 3.9506 -5.6587 2.6092 19 6 4.9290 -6.8049 2.6093 20 6 6.1866 -6.8449 3.2540 21 6 6.6714 -8.0726 2.9500 22 8 5.7436 -8.6691 2.1883 23 7 4.7863 -7.9520 2.0107 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5570 0.8896 27 1 2.6869 -3.3877 -2.0288 28 1 3.6886 -4.5594 -1.1388 29 1 0.7115 -5.2096 -1.3876 30 1 3.3929 -6.8291 -1.5431 31 1 1.6929 -7.5444 -1.5339 32 1 1.1433 -6.2644 -3.6537 33 1 2.8430 -5.5488 -3.6627 34 1 4.5323 -4.9689 0.6527 35 1 3.1790 -6.1250 0.6530 36 1 3.0378 -5.9606 3.1228 37 1 4.3911 -4.8045 3.1233 38 1 6.6528 -6.0748 3.8506 39 1 7.6189 -8.4885 3.2595 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590444435.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:52 Heat of formation + Delta-G solvation = 22.694283 kcal Electronic energy + Delta-G solvation = -21460.675584 eV Core-core repulsion = 18178.615430 eV Total energy + Delta-G solvation = -3282.060155 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.84046 -40.90058 -38.43241 -36.50222 -35.97061 -34.61136 -33.06330 -32.14278 -29.85176 -27.82730 -26.57744 -24.35744 -23.99628 -23.20998 -21.91068 -21.58501 -19.90330 -18.80929 -18.62028 -18.44940 -17.89675 -17.18374 -16.75136 -16.14708 -16.00734 -15.71234 -15.19536 -14.63757 -14.56742 -14.24427 -14.08947 -13.79142 -13.47743 -13.29591 -13.10050 -12.90356 -12.61322 -12.58450 -12.54916 -12.31302 -12.23459 -11.94144 -11.70997 -11.28125 -11.03394 -10.87425 -10.65634 -10.57043 -10.45933 -9.47435 -8.23025 -6.38107 0.70163 1.32681 1.36290 1.38507 1.50557 1.78454 2.24243 2.41977 2.56444 2.92793 3.06569 3.22189 3.56540 3.74415 3.86402 3.99603 4.06531 4.10500 4.25236 4.27884 4.34875 4.51634 4.63498 4.71219 4.74722 4.80010 4.82509 4.93247 5.01483 5.04125 5.07703 5.21213 5.22467 5.27823 5.30166 5.55451 5.82607 6.05117 6.67947 6.76182 7.26612 7.43029 7.44478 8.84644 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016865 B = 0.004616 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.827050 B = 6063.834022 C = 7215.483049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.055 0.945 9 C 0.262 3.738 10 N -0.599 5.599 11 C 0.143 3.857 12 C -0.193 4.193 13 C -0.167 4.167 14 C -0.157 4.157 15 C 0.500 3.500 16 O -0.594 6.594 17 C -0.116 4.116 18 C -0.022 4.022 19 C 0.004 3.996 20 C -0.244 4.244 21 C -0.040 4.040 22 O 0.093 5.907 23 N -0.392 5.392 24 H 0.267 0.733 25 H 0.020 0.980 26 H -0.004 1.004 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.191 0.809 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.210 -17.157 -0.601 22.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.073 0.927 9 C 0.141 3.859 10 N -0.328 5.328 11 C 0.020 3.980 12 C -0.212 4.212 13 C -0.204 4.204 14 C -0.194 4.194 15 C 0.289 3.711 16 O -0.476 6.476 17 C -0.156 4.156 18 C -0.060 4.060 19 C -0.154 4.154 20 C -0.265 4.265 21 C -0.121 4.121 22 O 0.026 5.974 23 N -0.096 5.096 24 H 0.076 0.924 25 H 0.038 0.962 26 H 0.015 0.985 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.208 0.792 39 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 13.869 -17.335 -0.846 22.216 hybrid contribution 0.063 1.748 0.686 1.879 sum 13.932 -15.587 -0.159 20.906 Atomic orbital electron populations 1.70069 1.07663 1.28108 1.51094 1.25885 0.95792 1.03136 0.94374 0.85334 0.78812 0.78497 0.77957 1.18932 1.19466 1.20704 1.21725 0.93308 0.91819 1.51157 0.92694 1.18721 0.87958 0.83796 0.95454 1.48168 1.44776 1.33649 1.06237 1.21211 0.96899 0.94923 0.84925 1.22667 0.99816 0.95141 1.03585 1.23102 1.02034 0.93426 1.01830 1.23021 1.04089 1.02475 0.89859 1.21194 0.82412 0.84367 0.83133 1.90630 1.60529 1.63768 1.32677 1.21572 0.98810 0.96381 0.98846 1.19585 0.96641 0.93585 0.96233 1.23683 0.97747 0.94716 0.99259 1.23113 0.95240 1.01053 1.07108 1.26873 0.97634 0.93024 0.94573 1.84797 1.21094 1.38320 1.53152 1.73844 1.08782 1.04819 1.22198 0.92414 0.96235 0.98549 0.90549 0.88600 0.90096 0.87694 0.88596 0.87986 0.87185 0.87494 0.87606 0.91032 0.89118 0.79222 0.71944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 2 C 0.01 0.40 5.46 84.65 0.46 0.87 16 3 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.54 -31.75 9.39 25.60 0.24 -31.51 16 8 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 9 C 0.26 14.60 5.16 85.63 0.44 15.04 16 10 N -0.60 -26.46 2.46 -826.17 -2.03 -28.49 16 11 C 0.14 4.75 5.49 86.38 0.47 5.23 16 12 C -0.19 -5.60 5.95 -10.79 -0.06 -5.66 16 13 C -0.17 -3.73 9.18 30.60 0.28 -3.45 16 14 C -0.16 -3.40 10.25 30.59 0.31 -3.09 16 15 C 0.50 21.61 7.67 87.66 0.67 22.28 16 16 O -0.59 -31.41 15.56 -3.04 -0.05 -31.45 16 17 C -0.12 -3.57 4.22 29.85 0.13 -3.44 16 18 C -0.02 -0.64 5.10 29.85 0.15 -0.49 16 19 C 0.00 0.09 6.59 43.58 0.29 0.38 16 20 C -0.24 -4.08 11.12 22.40 0.25 -3.83 16 21 C -0.04 -0.48 12.30 67.17 0.83 0.35 16 22 O 0.09 1.80 11.20 71.60 0.80 2.61 16 23 N -0.39 -9.88 12.06 -49.55 -0.60 -10.48 16 24 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 25 H 0.02 1.12 8.07 -2.38 -0.02 1.10 16 26 H 0.00 -0.23 7.42 -2.39 -0.02 -0.25 16 27 H 0.08 2.66 8.07 -2.39 -0.02 2.65 16 28 H 0.10 2.58 6.17 -2.39 -0.01 2.57 16 29 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.10 2.12 7.87 -2.39 -0.02 2.10 16 31 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.11 2.84 7.40 -2.38 -0.02 2.82 16 35 H 0.11 3.05 6.84 -2.39 -0.02 3.03 16 36 H 0.07 2.31 8.10 -2.38 -0.02 2.29 16 37 H 0.09 2.65 8.09 -2.39 -0.02 2.63 16 38 H 0.19 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.26 0.11 8.06 -2.91 -0.02 0.09 16 Total: -1.00 -77.50 336.15 5.94 -71.56 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 1.04 Total: 13.13 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 4.46 Total: -7.33 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -2.34 Total: -95.82 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: 0.75 Total: -28.85 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -77.50 5.94 -71.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590444435.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.258 kcal (2) G-P(sol) polarization free energy of solvation -77.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds