Wall clock time and date at job start Mon Mar 30 2020 23:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38291 * 119.99591 * 2 1 4 4 C 1.38231 * 120.17959 * 179.97438 * 3 2 1 5 5 C 1.38245 * 120.16405 * 0.02562 * 4 3 2 6 6 C 1.38677 * 119.98457 * 0.07091 * 5 4 3 7 7 N 1.40119 * 120.08772 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00334 * 325.35969 * 7 6 5 9 9 O 1.21298 * 119.99742 * 4.45125 * 8 7 6 10 10 C 1.50702 * 120.00452 * 184.45477 * 8 7 6 11 11 H 1.09008 * 109.46774 * 39.99830 * 10 8 7 12 12 N 1.46897 * 109.47164 * 159.99281 * 10 8 7 13 13 C 1.52998 * 109.46884 * 279.99786 * 10 8 7 14 14 C 1.53001 * 109.46609 * 174.99798 * 13 10 8 15 15 C 1.50698 * 109.46719 * 179.97438 * 14 13 10 16 16 H 1.08006 * 120.00622 * 0.02562 * 15 14 13 17 17 C 1.37884 * 120.00236 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99584 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00260 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47133 * 60.00258 * 19 17 15 21 21 H 1.48500 * 109.47216 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47361 * 299.99941 * 19 17 15 23 23 C 1.38510 * 119.99055 * 180.02562 * 2 1 3 24 24 O 1.35971 * 120.08455 * 359.72236 * 23 2 1 25 25 H 1.09012 * 109.46904 * 269.97670 * 1 2 3 26 26 H 1.09004 * 109.47495 * 29.97069 * 1 2 3 27 27 H 1.09002 * 109.47672 * 149.97871 * 1 2 3 28 28 H 1.07999 * 119.90840 * 0.02562 * 3 2 1 29 29 H 1.07997 * 119.91510 * 180.02562 * 4 3 2 30 30 H 1.07996 * 120.00329 * 180.02562 * 5 4 3 31 31 H 0.97002 * 120.00202 * 145.35450 * 7 6 5 32 32 H 1.00893 * 111.00796 * 296.05169 * 12 10 8 33 33 H 1.00906 * 110.99712 * 60.00221 * 12 10 8 34 34 H 1.08990 * 109.47090 * 294.99538 * 13 10 8 35 35 H 1.08997 * 109.47054 * 55.00394 * 13 10 8 36 36 H 1.09000 * 109.47602 * 299.99345 * 14 13 10 37 37 H 1.09001 * 109.47408 * 60.00585 * 14 13 10 38 38 H 0.96994 * 119.99805 * 180.02562 * 18 17 15 39 39 H 0.96705 * 113.99959 * 89.99463 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1977 0.0000 4 6 3.5806 1.2021 0.0005 5 6 4.2791 0.0091 0.0005 6 6 3.5927 -1.1959 -0.0015 7 7 4.2985 -2.4063 -0.0020 8 6 5.4682 -2.5042 -0.6643 9 8 5.9502 -1.5240 -1.1919 10 6 6.1773 -3.8312 -0.7495 11 1 5.4461 -4.6244 -0.9059 12 7 7.1238 -3.8094 -1.8727 13 6 6.9374 -4.0878 0.5533 14 6 7.5542 -5.4875 0.5165 15 6 8.3034 -5.7400 1.7994 16 1 8.3360 -4.9785 2.5647 17 6 8.9465 -6.9436 1.9969 18 7 8.9064 -7.8711 1.0653 19 14 9.8746 -7.2569 3.5874 20 1 8.9373 -7.1585 4.7350 21 1 10.4734 -8.6153 3.5518 22 1 10.9514 -6.2457 3.7396 23 6 2.1993 -1.1996 -0.0005 24 8 1.5210 -2.3781 0.0046 25 1 -0.3633 -0.0004 1.0278 26 1 -0.3634 0.8903 -0.5134 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6568 2.1321 0.0004 29 1 4.1162 2.1399 0.0010 30 1 5.3590 0.0156 0.0014 31 1 3.9452 -3.1740 0.4743 32 1 6.6396 -3.7057 -2.7518 33 1 7.8124 -3.0819 -1.7512 34 1 7.7275 -3.3454 0.6651 35 1 6.2493 -4.0160 1.3955 36 1 6.7641 -6.2300 0.4047 37 1 8.2423 -5.5593 -0.3258 38 1 9.3584 -8.7179 1.2043 39 1 1.3210 -2.7207 -0.8773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591631761.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:35 Heat of formation + Delta-G solvation = -68.602356 kcal Electronic energy + Delta-G solvation = -21106.267952 eV Core-core repulsion = 17820.248878 eV Total energy + Delta-G solvation = -3286.019074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.87918 -39.32045 -36.79807 -35.48082 -34.93236 -32.84844 -32.16556 -30.17681 -29.41007 -27.03597 -26.44389 -24.10365 -22.36496 -22.03249 -20.51808 -19.75986 -18.60327 -17.66675 -16.98292 -16.25077 -16.06277 -15.76998 -15.38506 -14.84928 -14.57361 -14.41371 -14.19334 -13.62970 -13.53620 -13.41439 -12.62045 -12.47322 -12.34779 -12.21208 -12.06372 -11.67763 -11.60190 -11.06471 -10.89029 -10.71336 -10.61375 -10.39798 -10.05534 -9.83159 -9.41369 -9.04090 -8.73524 -8.44752 -8.27195 -8.17264 -5.95494 -3.97897 1.01333 1.13909 2.58673 3.03002 3.35608 3.40090 3.42579 3.47760 4.00008 4.48519 4.59637 4.69450 4.75772 4.93657 5.07550 5.21507 5.30886 5.35899 5.39828 5.43627 5.50167 5.57071 5.72906 5.85685 6.06035 6.17099 6.34241 6.35806 6.40447 6.57999 6.74511 7.02740 7.23344 7.41627 7.43672 7.69973 7.73636 7.92617 8.09080 8.10798 8.45758 9.09642 9.65396 11.15376 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026295 B = 0.003379 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.589125 B = 8283.955316 C = 8506.102714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.096 4.096 3 C -0.128 4.128 4 C -0.106 4.106 5 C -0.116 4.116 6 C 0.133 3.867 7 N -0.669 5.669 8 C 0.483 3.517 9 O -0.535 6.535 10 C 0.081 3.919 11 H 0.102 0.898 12 N -0.804 5.804 13 C -0.097 4.097 14 C 0.032 3.968 15 C -0.525 4.525 16 H 0.052 0.948 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.071 3.929 24 O -0.490 6.490 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.143 0.857 31 H 0.418 0.582 32 H 0.335 0.665 33 H 0.349 0.651 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.014 0.986 37 H 0.036 0.964 38 H 0.260 0.740 39 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.538 15.493 -4.786 23.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.124 4.124 5 C -0.136 4.136 6 C 0.037 3.963 7 N -0.314 5.314 8 C 0.270 3.730 9 O -0.411 6.411 10 C -0.035 4.035 11 H 0.120 0.880 12 N -0.332 5.332 13 C -0.135 4.135 14 C -0.005 4.005 15 C -0.563 4.563 16 H 0.070 0.930 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C 0.024 3.976 24 O -0.299 6.299 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.161 0.839 31 H 0.255 0.745 32 H 0.147 0.853 33 H 0.163 0.837 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.032 0.968 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -15.822 15.231 -4.400 22.399 hybrid contribution -0.077 0.308 0.460 0.559 sum -15.899 15.539 -3.940 22.578 Atomic orbital electron populations 1.20634 0.90497 1.02515 1.02579 1.19996 0.96561 0.92015 1.01087 1.20905 0.94153 0.97047 1.02531 1.21080 0.94002 0.97898 0.99462 1.21292 1.01595 0.90387 1.00343 1.18229 0.89999 0.87020 1.01063 1.43772 1.22633 1.12679 1.52333 1.23139 0.79888 0.93813 0.76136 1.90641 1.64893 1.39116 1.46436 1.21889 0.94717 0.90675 0.96196 0.88037 1.58993 1.16318 1.54941 1.02976 1.21700 0.98232 1.02768 0.90837 1.19010 0.95900 0.88125 0.97474 1.21237 1.32483 1.00175 1.02401 0.93007 1.24990 0.96514 0.96280 0.96501 1.69961 1.43747 1.06120 1.33338 0.86698 0.80213 0.77251 0.84048 1.20333 1.21316 1.20307 1.18002 0.87901 0.85639 1.06015 1.84855 1.76043 1.35682 1.33338 0.90982 0.91611 0.91467 0.85717 0.85520 0.83886 0.74509 0.85332 0.83687 0.92667 0.92719 0.96799 0.94612 0.93005 0.75937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.79 36.00 0.35 -0.45 16 2 C -0.10 -0.98 5.89 -104.50 -0.62 -1.60 16 3 C -0.13 -1.25 9.69 -39.56 -0.38 -1.63 16 4 C -0.11 -1.16 10.04 -39.58 -0.40 -1.56 16 5 C -0.12 -1.57 8.70 -39.42 -0.34 -1.91 16 6 C 0.13 1.77 6.32 -83.50 -0.53 1.24 16 7 N -0.67 -8.89 5.19 -9.75 -0.05 -8.94 16 8 C 0.48 7.38 6.91 -10.98 -0.08 7.30 16 9 O -0.53 -9.25 13.67 5.54 0.08 -9.18 16 10 C 0.08 1.31 3.15 -68.87 -0.22 1.09 16 11 H 0.10 1.53 8.14 -51.92 -0.42 1.11 16 12 N -0.80 -13.01 8.44 -5.65 -0.05 -13.06 16 13 C -0.10 -1.92 4.78 -26.73 -0.13 -2.04 16 14 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 15 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 16 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 19 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.07 0.83 6.69 -39.07 -0.26 0.57 16 24 O -0.49 -4.88 12.10 -19.65 -0.24 -5.11 16 25 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 27 H 0.07 0.47 7.53 -51.93 -0.39 0.08 16 28 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 29 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.14 2.17 6.19 -52.49 -0.33 1.84 16 31 H 0.42 4.97 8.56 -40.82 -0.35 4.62 16 32 H 0.33 4.66 9.06 -39.30 -0.36 4.30 16 33 H 0.35 5.70 8.58 -39.29 -0.34 5.36 16 34 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.39 2.34 9.06 45.56 0.41 2.76 16 LS Contribution 332.66 15.07 5.01 5.01 Total: -1.00 -32.94 332.66 -7.34 -40.28 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -4.67 Total: 12.17 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -3.14 Total: -11.81 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.64 Total: -48.06 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.16 Total: -14.29 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.94 -7.34 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591631761.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.319 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds