Wall clock time and date at job start Mon Mar 30 2020 23:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38291 * 119.99591 * 2 1 4 4 C 1.38231 * 120.17959 * 179.97438 * 3 2 1 5 5 C 1.38245 * 120.16405 * 0.02562 * 4 3 2 6 6 C 1.38677 * 119.98457 * 0.07091 * 5 4 3 7 7 N 1.40119 * 120.08772 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00334 * 325.35969 * 7 6 5 9 9 O 1.21298 * 119.99742 * 4.45125 * 8 7 6 10 10 C 1.50702 * 120.00452 * 184.45477 * 8 7 6 11 11 H 1.09008 * 109.46774 * 39.99830 * 10 8 7 12 12 N 1.46897 * 109.47164 * 159.99281 * 10 8 7 13 13 C 1.52998 * 109.46884 * 279.99786 * 10 8 7 14 14 C 1.53001 * 109.46609 * 174.99798 * 13 10 8 15 15 C 1.50698 * 109.46719 * 179.97438 * 14 13 10 16 16 H 1.08006 * 120.00622 * 0.02562 * 15 14 13 17 17 C 1.37884 * 120.00236 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99584 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00260 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47133 * 60.00258 * 19 17 15 21 21 H 1.48500 * 109.47216 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47361 * 299.99941 * 19 17 15 23 23 C 1.38510 * 119.99055 * 180.02562 * 2 1 3 24 24 O 1.35971 * 120.08455 * 359.72236 * 23 2 1 25 25 H 1.09012 * 109.46904 * 269.97670 * 1 2 3 26 26 H 1.09004 * 109.47495 * 29.97069 * 1 2 3 27 27 H 1.09002 * 109.47672 * 149.97871 * 1 2 3 28 28 H 1.07999 * 119.90840 * 0.02562 * 3 2 1 29 29 H 1.07997 * 119.91510 * 180.02562 * 4 3 2 30 30 H 1.07996 * 120.00329 * 180.02562 * 5 4 3 31 31 H 0.97002 * 120.00202 * 145.35450 * 7 6 5 32 32 H 1.00893 * 111.00796 * 296.05169 * 12 10 8 33 33 H 1.00906 * 110.99712 * 60.00221 * 12 10 8 34 34 H 1.08990 * 109.47090 * 294.99538 * 13 10 8 35 35 H 1.08997 * 109.47054 * 55.00394 * 13 10 8 36 36 H 1.09000 * 109.47602 * 299.99345 * 14 13 10 37 37 H 1.09001 * 109.47408 * 60.00585 * 14 13 10 38 38 H 0.96994 * 119.99805 * 180.02562 * 18 17 15 39 39 H 0.96705 * 113.99959 * 89.99463 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1977 0.0000 4 6 3.5806 1.2021 0.0005 5 6 4.2791 0.0091 0.0005 6 6 3.5927 -1.1959 -0.0015 7 7 4.2985 -2.4063 -0.0020 8 6 5.4682 -2.5042 -0.6643 9 8 5.9502 -1.5240 -1.1919 10 6 6.1773 -3.8312 -0.7495 11 1 5.4461 -4.6244 -0.9059 12 7 7.1238 -3.8094 -1.8727 13 6 6.9374 -4.0878 0.5533 14 6 7.5542 -5.4875 0.5165 15 6 8.3034 -5.7400 1.7994 16 1 8.3360 -4.9785 2.5647 17 6 8.9465 -6.9436 1.9969 18 7 8.9064 -7.8711 1.0653 19 14 9.8746 -7.2569 3.5874 20 1 8.9373 -7.1585 4.7350 21 1 10.4734 -8.6153 3.5518 22 1 10.9514 -6.2457 3.7396 23 6 2.1993 -1.1996 -0.0005 24 8 1.5210 -2.3781 0.0046 25 1 -0.3633 -0.0004 1.0278 26 1 -0.3634 0.8903 -0.5134 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6568 2.1321 0.0004 29 1 4.1162 2.1399 0.0010 30 1 5.3590 0.0156 0.0014 31 1 3.9452 -3.1740 0.4743 32 1 6.6396 -3.7057 -2.7518 33 1 7.8124 -3.0819 -1.7512 34 1 7.7275 -3.3454 0.6651 35 1 6.2493 -4.0160 1.3955 36 1 6.7641 -6.2300 0.4047 37 1 8.2423 -5.5593 -0.3258 38 1 9.3584 -8.7179 1.2043 39 1 1.3210 -2.7207 -0.8773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591631761.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:34 Heat of formation + Delta-G solvation = -93.735318 kcal Electronic energy + Delta-G solvation = -21107.357799 eV Core-core repulsion = 17820.248878 eV Total energy + Delta-G solvation = -3287.108921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.91784 -40.34321 -37.61671 -36.92464 -36.06724 -34.84670 -32.97283 -31.96824 -30.37643 -28.12719 -27.73603 -25.74004 -23.39278 -23.13750 -22.06816 -20.97559 -19.49994 -18.81953 -18.23602 -18.07758 -17.08522 -16.80873 -16.61396 -16.38667 -15.84022 -15.74069 -15.29359 -14.98525 -14.39703 -14.27282 -14.16499 -13.86133 -13.49965 -13.28462 -13.21657 -13.03015 -12.78985 -12.54251 -12.39245 -12.31522 -11.95579 -11.72741 -11.67048 -11.34181 -11.18360 -10.94503 -10.49297 -9.72403 -9.54894 -9.14070 -8.14710 -6.25000 0.13495 0.27042 1.39951 1.42348 1.44027 1.51848 1.93947 2.44043 2.63113 3.18333 3.21365 3.45803 3.69680 3.84379 4.01760 4.04668 4.25218 4.35165 4.39459 4.43519 4.73136 4.76679 4.82530 4.84690 4.89238 5.18135 5.19674 5.21974 5.34825 5.49336 5.53903 5.55867 5.82639 5.89967 5.97120 6.02672 6.28386 6.29110 6.47885 6.72398 6.93295 6.96053 7.43076 8.96283 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026295 B = 0.003379 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.589125 B = 8283.955316 C = 8506.102714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.099 4.099 3 C -0.120 4.120 4 C -0.110 4.110 5 C -0.139 4.139 6 C 0.104 3.896 7 N -0.657 5.657 8 C 0.490 3.510 9 O -0.556 6.556 10 C 0.091 3.909 11 H 0.115 0.885 12 N -0.815 5.815 13 C -0.084 4.084 14 C 0.040 3.960 15 C -0.547 4.547 16 H 0.055 0.945 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.959 3.041 20 H -0.267 1.267 21 H -0.283 1.283 22 H -0.271 1.271 23 C 0.071 3.929 24 O -0.495 6.495 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.156 0.844 29 H 0.146 0.854 30 H 0.119 0.881 31 H 0.424 0.576 32 H 0.348 0.652 33 H 0.347 0.653 34 H 0.045 0.955 35 H 0.065 0.935 36 H -0.005 1.005 37 H 0.008 0.992 38 H 0.262 0.738 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.305 16.743 -4.071 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.101 4.101 3 C -0.139 4.139 4 C -0.129 4.129 5 C -0.159 4.159 6 C 0.009 3.991 7 N -0.303 5.303 8 C 0.277 3.723 9 O -0.434 6.434 10 C -0.025 4.025 11 H 0.132 0.868 12 N -0.344 5.344 13 C -0.122 4.122 14 C 0.003 3.997 15 C -0.585 4.585 16 H 0.073 0.927 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.784 3.216 20 H -0.192 1.192 21 H -0.209 1.209 22 H -0.196 1.196 23 C 0.024 3.976 24 O -0.306 6.306 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.174 0.826 29 H 0.163 0.837 30 H 0.137 0.863 31 H 0.262 0.738 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.014 0.986 37 H 0.026 0.974 38 H 0.071 0.929 39 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -17.630 16.488 -3.689 24.419 hybrid contribution 0.385 -0.047 0.212 0.442 sum -17.245 16.442 -3.477 24.079 Atomic orbital electron populations 1.20700 0.88368 1.03834 1.03151 1.20394 0.98142 0.91581 0.99936 1.21290 0.93685 0.98283 1.00607 1.21330 0.94861 0.97720 0.98950 1.21251 1.00707 0.91759 1.02202 1.18442 0.90934 0.86618 1.03082 1.43571 1.21952 1.13214 1.51572 1.22721 0.80422 0.92819 0.76351 1.90638 1.65684 1.39501 1.47605 1.21641 0.94572 0.91861 0.94432 0.86754 1.58975 1.16693 1.55034 1.03742 1.21419 0.98311 0.99062 0.93431 1.18817 0.94710 0.90777 0.95399 1.21713 1.32820 1.00451 1.03506 0.92692 1.25892 0.97473 0.96085 1.00080 1.70091 1.44743 1.06611 1.35447 0.85598 0.78964 0.77229 0.79822 1.19172 1.20858 1.19601 1.18105 0.87274 0.86696 1.05520 1.84808 1.75618 1.35269 1.34940 0.90622 0.89663 0.90896 0.82589 0.83656 0.86297 0.73818 0.83838 0.83928 0.93647 0.91658 0.98627 0.97375 0.92880 0.73922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 9.79 71.23 0.70 -0.54 16 2 C -0.10 -1.79 5.89 -19.79 -0.12 -1.90 16 3 C -0.12 -2.02 9.69 22.28 0.22 -1.81 16 4 C -0.11 -2.26 10.04 22.27 0.22 -2.04 16 5 C -0.14 -3.76 8.70 22.38 0.19 -3.56 16 6 C 0.10 2.73 6.32 38.19 0.24 2.97 16 7 N -0.66 -17.31 5.19 -303.13 -1.57 -18.88 16 8 C 0.49 15.03 6.91 87.66 0.61 15.63 16 9 O -0.56 -19.57 13.67 -3.08 -0.04 -19.61 16 10 C 0.09 2.95 3.15 44.17 0.14 3.09 16 11 H 0.11 3.41 8.14 -2.38 -0.02 3.39 16 12 N -0.82 -26.75 8.44 -171.80 -1.45 -28.20 16 13 C -0.08 -3.35 4.78 30.59 0.15 -3.21 16 14 C 0.04 2.08 4.86 29.85 0.15 2.22 16 15 C -0.55 -31.13 9.11 25.60 0.23 -30.89 16 16 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 17 C 0.00 0.16 5.46 84.66 0.46 0.62 16 18 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 19 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 23 C 0.07 1.54 6.69 22.60 0.15 1.69 16 24 O -0.49 -8.94 12.10 -93.22 -1.13 -10.07 16 25 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.08 0.69 8.09 -2.38 -0.02 0.67 16 27 H 0.07 0.79 7.53 -2.39 -0.02 0.77 16 28 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 29 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 30 H 0.12 3.75 6.19 -2.91 -0.02 3.73 16 31 H 0.42 9.83 8.56 -92.71 -0.79 9.04 16 32 H 0.35 9.70 9.06 -89.70 -0.81 8.88 16 33 H 0.35 11.61 8.58 -89.69 -0.77 10.84 16 34 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 2.44 8.14 -2.39 -0.02 2.43 16 36 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H 0.01 0.45 7.75 -2.39 -0.02 0.43 16 38 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 39 H 0.40 4.10 9.06 -74.05 -0.67 3.43 16 Total: -1.00 -71.32 332.66 -0.48 -71.80 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: -1.94 Total: 32.43 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 3.34 Total: -17.73 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -2.74 Total: -103.42 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -1.17 Total: -29.68 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -71.32 -0.48 -71.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591631761.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.932 kcal (2) G-P(sol) polarization free energy of solvation -71.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds