Wall clock time and date at job start Mon Mar 30 2020 23:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38292 * 119.99712 * 2 1 4 4 C 1.38235 * 120.18069 * 179.97438 * 3 2 1 5 5 C 1.38231 * 120.16554 * 0.02562 * 4 3 2 6 6 C 1.38682 * 119.98615 * 359.97438 * 5 4 3 7 7 N 1.40119 * 120.08995 * 179.97438 * 6 5 4 8 8 C 1.34778 * 120.00167 * 325.33800 * 7 6 5 9 9 O 1.21288 * 120.00043 * 4.46589 * 8 7 6 10 10 C 1.50703 * 119.99819 * 184.46346 * 8 7 6 11 11 H 1.08993 * 109.47625 * 320.00222 * 10 8 7 12 12 N 1.46899 * 109.46714 * 199.99775 * 10 8 7 13 13 C 1.53002 * 109.46846 * 80.00340 * 10 8 7 14 14 C 1.53003 * 109.47054 * 184.99848 * 13 10 8 15 15 C 1.50700 * 109.47047 * 180.02562 * 14 13 10 16 16 H 1.07996 * 119.99894 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99877 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99838 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99993 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47055 * 89.99698 * 19 17 15 21 21 H 1.48501 * 109.46957 * 209.99720 * 19 17 15 22 22 H 1.48494 * 109.47019 * 329.99856 * 19 17 15 23 23 C 1.38515 * 119.99097 * 179.97438 * 2 1 3 24 24 O 1.35971 * 120.08430 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.47300 * 89.99500 * 1 2 3 26 26 H 1.09000 * 109.47231 * 209.99908 * 1 2 3 27 27 H 1.09005 * 109.47082 * 329.99546 * 1 2 3 28 28 H 1.08005 * 119.90433 * 359.96313 * 3 2 1 29 29 H 1.08002 * 119.91563 * 180.02562 * 4 3 2 30 30 H 1.08005 * 120.00629 * 179.70186 * 5 4 3 31 31 H 0.97007 * 120.00058 * 145.33302 * 7 6 5 32 32 H 1.00909 * 110.99995 * 176.04918 * 12 10 8 33 33 H 1.00903 * 111.00449 * 300.00253 * 12 10 8 34 34 H 1.09003 * 109.47149 * 304.99522 * 13 10 8 35 35 H 1.08998 * 109.47373 * 64.99854 * 13 10 8 36 36 H 1.09003 * 109.46876 * 299.99841 * 14 13 10 37 37 H 1.08998 * 109.47025 * 59.99793 * 14 13 10 38 38 H 0.97001 * 120.00033 * 179.97438 * 18 17 15 39 39 H 0.96691 * 114.00065 * 90.00104 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1977 0.0000 4 6 3.5807 1.2021 0.0005 5 6 4.2791 0.0092 0.0005 6 6 3.5927 -1.1958 0.0005 7 7 4.2985 -2.4063 0.0000 8 6 5.4671 -2.5048 -0.6643 9 8 5.9482 -1.5252 -1.1935 10 6 6.1758 -3.8320 -0.7495 11 1 6.1003 -4.3464 0.2084 12 7 7.5908 -3.6112 -1.0766 13 6 5.5277 -4.6871 -1.8402 14 6 6.1642 -6.0785 -1.8430 15 6 5.5263 -6.9205 -2.9176 16 1 4.7447 -6.5051 -3.5364 17 6 5.9397 -8.2218 -3.1102 18 7 6.8911 -8.7278 -2.3563 19 14 5.1484 -9.2658 -4.4418 20 1 5.9001 -9.1012 -5.7118 21 1 5.1744 -10.6931 -4.0325 22 1 3.7418 -8.8331 -4.6396 23 6 2.1993 -1.1997 0.0005 24 8 1.5210 -2.3781 0.0016 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6567 2.1321 -0.0006 29 1 4.1163 2.1400 0.0010 30 1 5.3591 0.0157 -0.0039 31 1 3.9461 -3.1735 0.4778 32 1 8.1021 -4.4812 -1.0762 33 1 7.6876 -3.1354 -1.9611 34 1 4.4591 -4.7769 -1.6445 35 1 5.6810 -4.2155 -2.8108 36 1 7.2328 -5.9887 -2.0386 37 1 6.0109 -6.5501 -0.8723 38 1 7.1817 -9.6433 -2.4914 39 1 1.3245 -2.7196 -0.8814 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591631763.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:38 Heat of formation + Delta-G solvation = -69.665696 kcal Electronic energy + Delta-G solvation = -21196.531726 eV Core-core repulsion = 17910.466542 eV Total energy + Delta-G solvation = -3286.065184 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.77267 -39.18174 -36.70687 -35.70073 -34.84055 -32.91307 -32.10354 -29.96516 -29.38241 -26.97494 -26.52477 -24.22926 -22.31640 -22.07045 -20.53188 -19.78145 -18.52433 -17.59706 -17.06623 -16.30570 -16.00076 -15.55178 -15.04495 -14.70494 -14.48161 -14.36077 -14.15442 -13.60951 -13.43299 -13.17108 -13.10536 -12.53602 -12.39415 -12.20247 -12.09766 -11.77310 -11.58587 -11.16180 -10.99456 -10.89099 -10.71258 -10.29974 -10.04691 -9.89060 -9.35329 -9.26868 -8.65126 -8.47842 -8.29050 -8.11956 -6.12202 -4.15621 1.09137 1.20879 2.73076 3.05149 3.24811 3.31712 3.34345 3.53738 4.11764 4.36223 4.66999 4.78523 4.85417 5.07590 5.15184 5.24030 5.28242 5.37855 5.42961 5.47629 5.58930 5.62282 5.67025 5.94123 6.12920 6.19834 6.24264 6.41932 6.43589 6.46547 6.79748 6.82426 7.30298 7.45841 7.51020 7.52366 7.58226 7.81819 7.84633 8.23581 8.27193 8.90097 9.49537 10.98683 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022249 B = 0.003778 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.158349 B = 7409.340114 C = 8357.301725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.096 4.096 3 C -0.128 4.128 4 C -0.107 4.107 5 C -0.117 4.117 6 C 0.136 3.864 7 N -0.672 5.672 8 C 0.525 3.475 9 O -0.519 6.519 10 C 0.077 3.923 11 H 0.100 0.900 12 N -0.830 5.830 13 C -0.137 4.137 14 C 0.024 3.976 15 C -0.525 4.525 16 H 0.054 0.946 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.073 3.927 24 O -0.492 6.492 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.145 0.855 31 H 0.416 0.584 32 H 0.357 0.643 33 H 0.346 0.654 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.018 0.982 37 H 0.019 0.981 38 H 0.262 0.738 39 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.795 16.531 5.784 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.125 4.125 5 C -0.137 4.137 6 C 0.040 3.960 7 N -0.318 5.318 8 C 0.314 3.686 9 O -0.393 6.393 10 C -0.038 4.038 11 H 0.118 0.882 12 N -0.363 5.363 13 C -0.177 4.177 14 C -0.013 4.013 15 C -0.563 4.563 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 C 0.026 3.974 24 O -0.302 6.302 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.162 0.838 31 H 0.253 0.747 32 H 0.172 0.828 33 H 0.159 0.841 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.038 0.962 38 H 0.072 0.928 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -9.223 17.489 6.688 20.872 hybrid contribution -0.807 -1.804 -1.872 2.722 sum -10.030 15.685 4.816 19.230 Atomic orbital electron populations 1.20671 0.90573 1.03144 1.02299 1.19995 0.96553 0.91998 1.01124 1.20905 0.94167 0.97016 1.02601 1.21062 0.93978 0.97867 0.99633 1.21300 1.01634 0.90335 1.00423 1.18165 0.89937 0.86794 1.01066 1.43569 1.22780 1.12718 1.52689 1.21175 0.79669 0.91492 0.76306 1.90626 1.64612 1.38756 1.45280 1.21469 0.90016 0.90675 1.01665 0.88212 1.58747 1.08257 1.29056 1.40209 1.22397 1.00265 0.98713 0.96324 1.19106 0.95905 0.88657 0.97594 1.21159 1.20531 0.97086 1.17547 0.92726 1.25013 0.95054 0.97961 0.96261 1.69946 1.28714 1.15386 1.39077 0.86573 0.79769 0.79576 0.81983 1.20608 1.21112 1.19877 1.18011 0.87942 0.85700 1.05758 1.84788 1.76014 1.35659 1.33693 0.91331 0.90817 0.91503 0.85788 0.85566 0.83774 0.74717 0.82761 0.84060 0.92454 0.92602 0.96351 0.96225 0.92829 0.75522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 9.79 36.00 0.35 -0.55 16 2 C -0.10 -1.04 5.89 -104.50 -0.62 -1.65 16 3 C -0.13 -1.30 9.69 -39.56 -0.38 -1.69 16 4 C -0.11 -1.19 10.04 -39.59 -0.40 -1.59 16 5 C -0.12 -1.60 8.71 -39.42 -0.34 -1.95 16 6 C 0.14 1.88 6.32 -83.49 -0.53 1.35 16 7 N -0.67 -9.28 5.19 -9.75 -0.05 -9.33 16 8 C 0.53 8.51 6.93 -10.98 -0.08 8.44 16 9 O -0.52 -9.61 13.67 5.55 0.08 -9.54 16 10 C 0.08 1.27 3.21 -68.86 -0.22 1.04 16 11 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 12 N -0.83 -13.80 8.94 -5.66 -0.05 -13.85 16 13 C -0.14 -2.61 4.78 -26.73 -0.13 -2.74 16 14 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 15 C -0.53 -14.18 9.11 -34.44 -0.31 -14.49 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 19 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 23 C 0.07 0.90 6.69 -39.07 -0.26 0.64 16 24 O -0.49 -5.42 12.10 -19.65 -0.24 -5.65 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.63 7.53 -51.93 -0.39 0.24 16 27 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 28 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 29 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.14 2.19 6.19 -52.48 -0.32 1.86 16 31 H 0.42 5.05 8.57 -40.82 -0.35 4.70 16 32 H 0.36 5.95 7.55 -39.29 -0.30 5.65 16 33 H 0.35 5.81 8.58 -39.29 -0.34 5.47 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.39 3.07 9.06 45.56 0.41 3.49 16 LS Contribution 330.70 15.07 4.98 4.98 Total: -1.00 -31.44 330.70 -7.27 -38.71 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -4.56 Total: 14.88 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -3.14 Total: -11.22 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.64 Total: -48.18 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.16 Total: -15.19 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.44 -7.27 -38.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591631763.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.959 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds