Wall clock time and date at job start Mon Mar 30 2020 23:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38292 * 119.99712 * 2 1 4 4 C 1.38235 * 120.18069 * 179.97438 * 3 2 1 5 5 C 1.38231 * 120.16554 * 0.02562 * 4 3 2 6 6 C 1.38682 * 119.98615 * 359.97438 * 5 4 3 7 7 N 1.40119 * 120.08995 * 179.97438 * 6 5 4 8 8 C 1.34778 * 120.00167 * 325.33800 * 7 6 5 9 9 O 1.21288 * 120.00043 * 4.46589 * 8 7 6 10 10 C 1.50703 * 119.99819 * 184.46346 * 8 7 6 11 11 H 1.08993 * 109.47625 * 320.00222 * 10 8 7 12 12 N 1.46899 * 109.46714 * 199.99775 * 10 8 7 13 13 C 1.53002 * 109.46846 * 80.00340 * 10 8 7 14 14 C 1.53003 * 109.47054 * 184.99848 * 13 10 8 15 15 C 1.50700 * 109.47047 * 180.02562 * 14 13 10 16 16 H 1.07996 * 119.99894 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99877 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99838 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99993 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47055 * 89.99698 * 19 17 15 21 21 H 1.48501 * 109.46957 * 209.99720 * 19 17 15 22 22 H 1.48494 * 109.47019 * 329.99856 * 19 17 15 23 23 C 1.38515 * 119.99097 * 179.97438 * 2 1 3 24 24 O 1.35971 * 120.08430 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.47300 * 89.99500 * 1 2 3 26 26 H 1.09000 * 109.47231 * 209.99908 * 1 2 3 27 27 H 1.09005 * 109.47082 * 329.99546 * 1 2 3 28 28 H 1.08005 * 119.90433 * 359.96313 * 3 2 1 29 29 H 1.08002 * 119.91563 * 180.02562 * 4 3 2 30 30 H 1.08005 * 120.00629 * 179.70186 * 5 4 3 31 31 H 0.97007 * 120.00058 * 145.33302 * 7 6 5 32 32 H 1.00909 * 110.99995 * 176.04918 * 12 10 8 33 33 H 1.00903 * 111.00449 * 300.00253 * 12 10 8 34 34 H 1.09003 * 109.47149 * 304.99522 * 13 10 8 35 35 H 1.08998 * 109.47373 * 64.99854 * 13 10 8 36 36 H 1.09003 * 109.46876 * 299.99841 * 14 13 10 37 37 H 1.08998 * 109.47025 * 59.99793 * 14 13 10 38 38 H 0.97001 * 120.00033 * 179.97438 * 18 17 15 39 39 H 0.96691 * 114.00065 * 90.00104 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1977 0.0000 4 6 3.5807 1.2021 0.0005 5 6 4.2791 0.0092 0.0005 6 6 3.5927 -1.1958 0.0005 7 7 4.2985 -2.4063 0.0000 8 6 5.4671 -2.5048 -0.6643 9 8 5.9482 -1.5252 -1.1935 10 6 6.1758 -3.8320 -0.7495 11 1 6.1003 -4.3464 0.2084 12 7 7.5908 -3.6112 -1.0766 13 6 5.5277 -4.6871 -1.8402 14 6 6.1642 -6.0785 -1.8430 15 6 5.5263 -6.9205 -2.9176 16 1 4.7447 -6.5051 -3.5364 17 6 5.9397 -8.2218 -3.1102 18 7 6.8911 -8.7278 -2.3563 19 14 5.1484 -9.2658 -4.4418 20 1 5.9001 -9.1012 -5.7118 21 1 5.1744 -10.6931 -4.0325 22 1 3.7418 -8.8331 -4.6396 23 6 2.1993 -1.1997 0.0005 24 8 1.5210 -2.3781 0.0016 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6567 2.1321 -0.0006 29 1 4.1163 2.1400 0.0010 30 1 5.3591 0.0157 -0.0039 31 1 3.9461 -3.1735 0.4778 32 1 8.1021 -4.4812 -1.0762 33 1 7.6876 -3.1354 -1.9611 34 1 4.4591 -4.7769 -1.6445 35 1 5.6810 -4.2155 -2.8108 36 1 7.2328 -5.9887 -2.0386 37 1 6.0109 -6.5501 -0.8723 38 1 7.1817 -9.6433 -2.4914 39 1 1.3245 -2.7196 -0.8814 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591631763.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:37 Heat of formation + Delta-G solvation = -93.162499 kcal Electronic energy + Delta-G solvation = -21197.550624 eV Core-core repulsion = 17910.466542 eV Total energy + Delta-G solvation = -3287.084082 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.85239 -40.26936 -37.61090 -37.15644 -35.99718 -34.86693 -32.95836 -31.72064 -30.38663 -28.15227 -27.69508 -25.89956 -23.43020 -23.12846 -22.05396 -21.00409 -19.49483 -18.88616 -18.26659 -18.07575 -16.91484 -16.68631 -16.47235 -16.19530 -15.82068 -15.63950 -15.31668 -14.83411 -14.70222 -14.35072 -14.17308 -14.01199 -13.50956 -13.22373 -13.21109 -13.04679 -12.92719 -12.70890 -12.51776 -12.35629 -11.89089 -11.83972 -11.66160 -11.33396 -11.26000 -10.70382 -10.56882 -9.71392 -9.51672 -9.11274 -8.22320 -6.32703 0.17541 0.30196 1.39669 1.39974 1.48236 1.51209 1.91303 2.39368 2.64743 3.11642 3.26478 3.60111 3.68851 3.86981 4.04385 4.07056 4.17627 4.38370 4.43050 4.46520 4.61900 4.78441 4.80666 4.84845 4.85838 5.05173 5.21358 5.23297 5.37603 5.45111 5.52846 5.57036 5.63492 5.79200 5.92920 6.00869 6.19654 6.33929 6.43715 6.73253 6.82661 7.03853 7.36542 8.88472 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022249 B = 0.003778 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.158349 B = 7409.340114 C = 8357.301725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.100 4.100 3 C -0.121 4.121 4 C -0.109 4.109 5 C -0.137 4.137 6 C 0.107 3.893 7 N -0.660 5.660 8 C 0.528 3.472 9 O -0.545 6.545 10 C 0.084 3.916 11 H 0.112 0.888 12 N -0.829 5.829 13 C -0.120 4.120 14 C 0.030 3.970 15 C -0.545 4.545 16 H 0.055 0.945 17 C 0.005 3.995 18 N -0.927 5.927 19 Si 0.959 3.041 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.265 1.265 23 C 0.068 3.932 24 O -0.497 6.497 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.157 0.843 29 H 0.148 0.852 30 H 0.123 0.877 31 H 0.423 0.577 32 H 0.355 0.645 33 H 0.345 0.655 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.004 0.996 37 H 0.003 0.997 38 H 0.264 0.736 39 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.929 17.608 5.548 21.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.101 4.101 3 C -0.139 4.139 4 C -0.127 4.127 5 C -0.158 4.158 6 C 0.013 3.987 7 N -0.306 5.306 8 C 0.316 3.684 9 O -0.421 6.421 10 C -0.031 4.031 11 H 0.130 0.870 12 N -0.361 5.361 13 C -0.160 4.160 14 C -0.007 4.007 15 C -0.583 4.583 16 H 0.074 0.926 17 C -0.193 4.193 18 N -0.566 5.566 19 Si 0.784 3.216 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.189 1.189 23 C 0.021 3.979 24 O -0.308 6.308 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.174 0.826 29 H 0.165 0.835 30 H 0.141 0.859 31 H 0.261 0.739 32 H 0.171 0.829 33 H 0.158 0.842 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.022 0.978 37 H 0.021 0.979 38 H 0.073 0.927 39 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -11.390 18.572 6.461 22.724 hybrid contribution -0.194 -2.078 -1.761 2.731 sum -11.584 16.493 4.699 20.695 Atomic orbital electron populations 1.20715 0.88526 1.03857 1.03252 1.20386 0.98082 0.91598 1.00014 1.21295 0.93779 0.98169 1.00660 1.21337 0.94768 0.97774 0.98857 1.21276 1.00859 0.91580 1.02068 1.18393 0.90784 0.86497 1.03056 1.43372 1.21936 1.13315 1.51938 1.20968 0.80214 0.90790 0.76416 1.90618 1.65467 1.39395 1.46662 1.21374 0.89690 0.90808 1.01209 0.87043 1.58756 1.08349 1.28842 1.40132 1.22132 1.00566 0.96366 0.96889 1.18972 0.95195 0.90791 0.95782 1.21609 1.20622 0.97833 1.18221 0.92633 1.25866 0.95588 0.99380 0.98489 1.70060 1.30050 1.15817 1.40724 0.85537 0.79175 0.77784 0.79108 1.20125 1.20732 1.18892 1.18142 0.87412 0.86675 1.05646 1.84752 1.75690 1.35442 1.34928 0.90137 0.91266 0.89664 0.82571 0.83453 0.85938 0.73891 0.82938 0.84166 0.91501 0.93527 0.97815 0.97907 0.92725 0.74008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 9.79 71.23 0.70 -0.73 16 2 C -0.10 -1.91 5.89 -19.79 -0.12 -2.03 16 3 C -0.12 -2.11 9.69 22.28 0.22 -1.89 16 4 C -0.11 -2.26 10.04 22.27 0.22 -2.04 16 5 C -0.14 -3.76 8.71 22.37 0.19 -3.57 16 6 C 0.11 2.93 6.32 38.19 0.24 3.17 16 7 N -0.66 -18.12 5.19 -303.13 -1.57 -19.69 16 8 C 0.53 17.19 6.93 87.66 0.61 17.80 16 9 O -0.55 -20.54 13.67 -3.05 -0.04 -20.58 16 10 C 0.08 2.79 3.21 44.17 0.14 2.93 16 11 H 0.11 3.41 8.14 -2.39 -0.02 3.40 16 12 N -0.83 -27.92 8.94 -171.80 -1.54 -29.45 16 13 C -0.12 -4.56 4.78 30.60 0.15 -4.41 16 14 C 0.03 1.44 4.74 29.85 0.14 1.58 16 15 C -0.54 -29.53 9.11 25.60 0.23 -29.30 16 16 H 0.06 2.93 7.74 -2.91 -0.02 2.91 16 17 C 0.01 0.29 5.46 84.66 0.46 0.76 16 18 N -0.93 -53.97 13.29 21.45 0.28 -53.68 16 19 Si 0.96 42.94 29.54 68.60 2.03 44.97 16 20 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 23 C 0.07 1.59 6.69 22.60 0.15 1.74 16 24 O -0.50 -10.21 12.10 -93.23 -1.13 -11.34 16 25 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 1.00 7.53 -2.39 -0.02 0.99 16 27 H 0.08 0.84 8.09 -2.38 -0.02 0.82 16 28 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 29 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 30 H 0.12 3.85 6.19 -2.91 -0.02 3.83 16 31 H 0.42 10.07 8.57 -92.70 -0.79 9.28 16 32 H 0.36 12.11 7.55 -89.69 -0.68 11.43 16 33 H 0.35 11.79 8.58 -89.69 -0.77 11.02 16 34 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.00 0.18 6.87 -2.39 -0.02 0.17 16 37 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 39 H 0.40 5.75 9.06 -74.06 -0.67 5.08 16 Total: -1.00 -67.16 330.70 -0.43 -67.59 By element: Atomic # 1 Polarization: 39.99 SS G_CDS: -1.80 Total: 38.19 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 3.34 Total: -16.01 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -2.82 Total: -102.83 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -1.17 Total: -31.92 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -67.16 -0.43 -67.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591631763.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.570 kcal (2) G-P(sol) polarization free energy of solvation -67.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds