Wall clock time and date at job start Tue Mar 31 2020 00:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35458 * 125.56143 * 2 1 4 4 C 1.39838 * 107.86256 * 179.70515 * 3 2 1 5 5 C 1.37869 * 107.08452 * 0.41726 * 4 3 2 6 6 C 1.46680 * 126.23243 * 179.85349 * 5 4 3 7 7 O 1.21696 * 119.99765 * 185.73983 * 6 5 4 8 8 N 1.34770 * 119.99998 * 5.73677 * 6 5 4 9 9 C 1.47019 * 125.64854 * 355.33183 * 8 6 5 10 10 C 1.54333 * 107.27089 * 178.98553 * 9 8 6 11 11 C 1.55152 * 102.94121 * 337.80218 * 10 9 8 12 12 O 1.42898 * 111.00496 * 277.43168 * 11 10 9 13 13 C 1.50698 * 111.00452 * 153.61591 * 11 10 9 14 14 H 1.08005 * 119.99956 * 3.18017 * 13 11 10 15 15 C 1.37874 * 120.00143 * 183.18246 * 13 11 10 16 16 N 1.31513 * 119.99943 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00337 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47032 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47331 * 119.99516 * 17 15 13 20 20 H 1.48496 * 109.47278 * 240.00148 * 17 15 13 21 21 C 1.47425 * 125.64643 * 175.37687 * 8 6 5 22 22 N 1.35527 * 125.56433 * 179.97438 * 2 1 3 23 23 C 1.46500 * 125.68176 * 0.02562 * 22 2 1 24 24 H 1.08995 * 109.47769 * 270.04332 * 1 2 3 25 25 H 1.09004 * 109.47338 * 30.04376 * 1 2 3 26 26 H 1.09000 * 109.47240 * 150.04164 * 1 2 3 27 27 H 1.07997 * 126.06522 * 359.97438 * 3 2 1 28 28 H 1.07991 * 126.45577 * 180.29880 * 4 3 2 29 29 H 1.08994 * 109.88995 * 59.56451 * 9 8 6 30 30 H 1.08999 * 109.87895 * 298.39815 * 9 8 6 31 31 H 1.08997 * 110.71596 * 219.44112 * 10 9 8 32 32 H 1.08994 * 110.87312 * 96.23808 * 10 9 8 33 33 H 0.96705 * 114.00395 * 180.02562 * 12 11 10 34 34 H 0.97008 * 120.00277 * 179.97438 * 16 15 13 35 35 H 1.09000 * 110.36431 * 85.25204 * 21 8 6 36 36 H 1.08998 * 110.37319 * 322.92352 * 21 8 6 37 37 H 1.08996 * 109.47295 * 274.76573 * 23 22 2 38 38 H 1.09002 * 109.46548 * 34.76576 * 23 22 2 39 39 H 1.08997 * 109.46960 * 154.75932 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6768 0.0068 5 6 3.6122 -0.7018 0.0013 6 6 4.7860 -1.5814 0.0023 7 8 4.6445 -2.7850 -0.1084 8 7 6.0212 -1.0566 0.1258 9 6 6.3425 0.3774 0.1697 10 6 7.8711 0.4994 0.3440 11 6 8.2615 -0.8717 0.9562 12 8 8.0472 -0.8815 2.3690 13 6 9.6893 -1.2235 0.6269 14 1 10.3049 -0.5253 0.0790 15 6 10.2099 -2.4365 1.0249 16 7 9.4605 -3.2865 1.6925 17 14 11.9801 -2.8722 0.6174 18 1 12.6046 -1.7541 -0.1343 19 1 12.7345 -3.1062 1.8750 20 1 12.0083 -4.1030 -0.2131 21 6 7.2740 -1.8254 0.2384 22 7 2.2952 -1.1025 0.0005 23 6 1.8242 -2.4897 0.0006 24 1 -0.3634 0.0008 1.0276 25 1 -0.3634 0.8896 -0.5145 26 1 -0.3634 -0.8904 -0.5132 27 1 1.9544 2.1269 -0.0004 28 1 4.5023 1.3092 0.0132 29 1 5.8347 0.8455 1.0129 30 1 6.0363 0.8545 -0.7613 31 1 8.1176 1.3114 1.0280 32 1 8.3612 0.6456 -0.6185 33 1 8.2776 -1.7180 2.7961 34 1 9.8267 -4.1401 1.9722 35 1 7.6497 -2.0855 -0.7513 36 1 7.1152 -2.7249 0.8332 37 1 1.6262 -2.8061 1.0246 38 1 0.9082 -2.5623 -0.5858 39 1 2.5878 -3.1326 -0.4372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592838621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:20 Heat of formation + Delta-G solvation = -28.778663 kcal Electronic energy + Delta-G solvation = -22207.821616 eV Core-core repulsion = 18923.529427 eV Total energy + Delta-G solvation = -3284.292189 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.28411 -38.98404 -37.03258 -34.44395 -32.68202 -32.19124 -31.69552 -30.12073 -28.16461 -26.68189 -26.30320 -24.66696 -23.07626 -20.77393 -19.91911 -19.45588 -18.78551 -17.20382 -16.53885 -15.73323 -15.56807 -15.21649 -14.77948 -14.58296 -14.18433 -13.54284 -13.28611 -13.19511 -13.07192 -12.99004 -12.78761 -12.72408 -12.09904 -11.95724 -11.88509 -11.70378 -11.56110 -11.25494 -11.05944 -10.67365 -10.54062 -10.47679 -10.18156 -9.42673 -9.32716 -8.70447 -8.58067 -8.38600 -7.97720 -7.68194 -6.29697 -4.39548 1.76845 2.82113 2.87694 3.19236 3.28238 3.31618 3.79112 3.84625 4.25818 4.79808 4.90285 4.96000 5.02553 5.09774 5.26955 5.42837 5.43391 5.56154 5.63091 5.66432 5.69918 5.79772 5.89003 6.06265 6.12161 6.27496 6.35817 6.51910 6.73569 6.86031 6.91171 7.08137 7.18469 7.26101 7.34265 7.39279 7.73230 7.98941 8.21337 8.64300 8.73941 9.30153 9.41418 10.77351 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036420 B = 0.004429 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.617449 B = 6320.994854 C = 6778.909658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.028 3.972 3 C -0.209 4.209 4 C -0.155 4.155 5 C -0.036 4.036 6 C 0.591 3.409 7 O -0.564 6.564 8 N -0.593 5.593 9 C 0.099 3.901 10 C -0.120 4.120 11 C 0.248 3.752 12 O -0.583 6.583 13 C -0.537 4.537 14 H 0.068 0.932 15 C 0.070 3.930 16 N -0.894 5.894 17 Si 0.904 3.096 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.282 1.282 21 C 0.098 3.902 22 N -0.410 5.410 23 C 0.061 3.939 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.138 0.862 28 H 0.157 0.843 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.384 0.616 34 H 0.270 0.730 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.836 6.365 -3.282 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.233 4.233 4 C -0.180 4.180 5 C -0.150 4.150 6 C 0.381 3.619 7 O -0.447 6.447 8 N -0.324 5.324 9 C -0.024 4.024 10 C -0.158 4.158 11 C 0.208 3.792 12 O -0.392 6.392 13 C -0.576 4.576 14 H 0.087 0.913 15 C -0.133 4.133 16 N -0.533 5.533 17 Si 0.731 3.269 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.208 1.208 21 C -0.023 4.023 22 N -0.083 5.083 23 C -0.080 4.080 24 H 0.090 0.910 25 H 0.099 0.901 26 H 0.081 0.919 27 H 0.156 0.844 28 H 0.174 0.826 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.235 0.765 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.258 5.741 -3.380 15.738 hybrid contribution 1.049 -0.941 -0.074 1.411 sum -13.209 4.800 -3.454 14.473 Atomic orbital electron populations 1.20329 0.88132 1.03047 1.02566 1.20490 0.93544 0.86073 1.08737 1.20601 0.92670 0.97441 1.12608 1.21979 0.98197 0.92530 1.05335 1.20181 0.84163 0.93794 1.16824 1.16594 0.81398 0.86367 0.77540 1.90709 1.85691 1.15073 1.53183 1.48353 1.06039 1.08505 1.69524 1.22374 0.97787 0.82110 1.00125 1.22678 0.92239 0.99782 1.01134 1.19618 0.91772 0.88459 0.79388 1.86086 1.89538 1.42004 1.21593 1.21534 0.96421 1.02419 1.37205 0.91337 1.25093 0.98546 0.95741 0.93905 1.69665 1.36477 1.09240 1.37936 0.86339 0.83789 0.78454 0.78273 1.19534 1.20733 1.20775 1.23308 0.80833 0.97181 1.00947 1.43721 1.04705 1.06400 1.53518 1.22286 1.01985 0.80327 1.03369 0.91021 0.90132 0.91899 0.84371 0.82618 0.91293 0.92029 0.90560 0.90339 0.76511 0.91981 0.92003 0.89736 0.90951 0.90497 0.87159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.08 36.00 0.36 -0.36 16 2 C 0.03 0.37 6.87 -81.95 -0.56 -0.20 16 3 C -0.21 -2.84 10.71 -39.98 -0.43 -3.27 16 4 C -0.15 -2.44 9.32 -39.12 -0.36 -2.80 16 5 C -0.04 -0.66 6.86 -81.98 -0.56 -1.22 16 6 C 0.59 12.70 7.81 -12.86 -0.10 12.60 16 7 O -0.56 -13.41 14.85 5.19 0.08 -13.34 16 8 N -0.59 -12.72 3.33 -172.05 -0.57 -13.29 16 9 C 0.10 1.79 4.98 -3.06 -0.02 1.77 16 10 C -0.12 -2.38 6.13 -24.89 -0.15 -2.53 16 11 C 0.25 6.00 0.89 -89.62 -0.08 5.92 16 12 O -0.58 -14.94 13.19 -35.23 -0.46 -15.40 16 13 C -0.54 -13.87 8.26 -34.44 -0.28 -14.15 16 14 H 0.07 1.73 7.78 -52.48 -0.41 1.32 16 15 C 0.07 1.82 5.27 -17.82 -0.09 1.72 16 16 N -0.89 -23.78 10.68 55.43 0.59 -23.19 16 17 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 C 0.10 2.39 5.49 -2.52 -0.01 2.38 16 22 N -0.41 -6.38 3.16 -115.62 -0.37 -6.75 16 23 C 0.06 0.81 10.51 59.85 0.63 1.44 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.48 7.10 -51.93 -0.37 0.11 16 27 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.16 2.23 4.43 -52.49 -0.23 2.00 16 29 H 0.07 1.19 6.75 -51.93 -0.35 0.84 16 30 H 0.06 0.95 7.09 -51.93 -0.37 0.58 16 31 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 32 H 0.08 1.45 8.02 -51.93 -0.42 1.03 16 33 H 0.38 10.16 7.18 45.56 0.33 10.49 16 34 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.06 1.54 8.03 -51.93 -0.42 1.12 16 36 H 0.08 2.30 7.52 -51.93 -0.39 1.91 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.74 7.13 -51.93 -0.37 0.37 16 39 H 0.11 1.72 5.96 -51.93 -0.31 1.41 16 LS Contribution 315.14 15.07 4.75 4.75 Total: -1.00 -30.36 315.14 -7.22 -37.59 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -4.55 Total: 13.16 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -1.67 Total: 1.29 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -0.35 Total: -43.24 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.39 Total: -28.74 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.36 -7.22 -37.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.807 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds