Wall clock time and date at job start Tue Mar 31 2020 00:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35458 * 125.56143 * 2 1 4 4 C 1.39838 * 107.86256 * 179.70515 * 3 2 1 5 5 C 1.37869 * 107.08452 * 0.41726 * 4 3 2 6 6 C 1.46680 * 126.23243 * 179.85349 * 5 4 3 7 7 O 1.21696 * 119.99765 * 185.73983 * 6 5 4 8 8 N 1.34770 * 119.99998 * 5.73677 * 6 5 4 9 9 C 1.47019 * 125.64854 * 355.33183 * 8 6 5 10 10 C 1.54333 * 107.27089 * 178.98553 * 9 8 6 11 11 C 1.55152 * 102.94121 * 337.80218 * 10 9 8 12 12 O 1.42898 * 111.00496 * 277.43168 * 11 10 9 13 13 C 1.50698 * 111.00452 * 153.61591 * 11 10 9 14 14 H 1.08005 * 119.99956 * 3.18017 * 13 11 10 15 15 C 1.37874 * 120.00143 * 183.18246 * 13 11 10 16 16 N 1.31513 * 119.99943 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00337 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47032 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47331 * 119.99516 * 17 15 13 20 20 H 1.48496 * 109.47278 * 240.00148 * 17 15 13 21 21 C 1.47425 * 125.64643 * 175.37687 * 8 6 5 22 22 N 1.35527 * 125.56433 * 179.97438 * 2 1 3 23 23 C 1.46500 * 125.68176 * 0.02562 * 22 2 1 24 24 H 1.08995 * 109.47769 * 270.04332 * 1 2 3 25 25 H 1.09004 * 109.47338 * 30.04376 * 1 2 3 26 26 H 1.09000 * 109.47240 * 150.04164 * 1 2 3 27 27 H 1.07997 * 126.06522 * 359.97438 * 3 2 1 28 28 H 1.07991 * 126.45577 * 180.29880 * 4 3 2 29 29 H 1.08994 * 109.88995 * 59.56451 * 9 8 6 30 30 H 1.08999 * 109.87895 * 298.39815 * 9 8 6 31 31 H 1.08997 * 110.71596 * 219.44112 * 10 9 8 32 32 H 1.08994 * 110.87312 * 96.23808 * 10 9 8 33 33 H 0.96705 * 114.00395 * 180.02562 * 12 11 10 34 34 H 0.97008 * 120.00277 * 179.97438 * 16 15 13 35 35 H 1.09000 * 110.36431 * 85.25204 * 21 8 6 36 36 H 1.08998 * 110.37319 * 322.92352 * 21 8 6 37 37 H 1.08996 * 109.47295 * 274.76573 * 23 22 2 38 38 H 1.09002 * 109.46548 * 34.76576 * 23 22 2 39 39 H 1.08997 * 109.46960 * 154.75932 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6768 0.0068 5 6 3.6122 -0.7018 0.0013 6 6 4.7860 -1.5814 0.0023 7 8 4.6445 -2.7850 -0.1084 8 7 6.0212 -1.0566 0.1258 9 6 6.3425 0.3774 0.1697 10 6 7.8711 0.4994 0.3440 11 6 8.2615 -0.8717 0.9562 12 8 8.0472 -0.8815 2.3690 13 6 9.6893 -1.2235 0.6269 14 1 10.3049 -0.5253 0.0790 15 6 10.2099 -2.4365 1.0249 16 7 9.4605 -3.2865 1.6925 17 14 11.9801 -2.8722 0.6174 18 1 12.6046 -1.7541 -0.1343 19 1 12.7345 -3.1062 1.8750 20 1 12.0083 -4.1030 -0.2131 21 6 7.2740 -1.8254 0.2384 22 7 2.2952 -1.1025 0.0005 23 6 1.8242 -2.4897 0.0006 24 1 -0.3634 0.0008 1.0276 25 1 -0.3634 0.8896 -0.5145 26 1 -0.3634 -0.8904 -0.5132 27 1 1.9544 2.1269 -0.0004 28 1 4.5023 1.3092 0.0132 29 1 5.8347 0.8455 1.0129 30 1 6.0363 0.8545 -0.7613 31 1 8.1176 1.3114 1.0280 32 1 8.3612 0.6456 -0.6185 33 1 8.2776 -1.7180 2.7961 34 1 9.8267 -4.1401 1.9722 35 1 7.6497 -2.0855 -0.7513 36 1 7.1152 -2.7249 0.8332 37 1 1.6262 -2.8061 1.0246 38 1 0.9082 -2.5623 -0.5858 39 1 2.5878 -3.1326 -0.4372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592838621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:19 Heat of formation + Delta-G solvation = -49.832799 kcal Electronic energy + Delta-G solvation = -22208.734592 eV Core-core repulsion = 18923.529427 eV Total energy + Delta-G solvation = -3285.205165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.46929 -40.61203 -38.78293 -36.24000 -34.20659 -33.84492 -32.72547 -31.73979 -29.82071 -28.12109 -27.43220 -26.31103 -24.60781 -22.08407 -21.54870 -20.97114 -20.00955 -19.14767 -18.00916 -17.23800 -17.06935 -16.92226 -16.27274 -16.14810 -15.67886 -14.93184 -14.88349 -14.66626 -14.48276 -14.24263 -13.92818 -13.64737 -13.61900 -13.52672 -13.22137 -12.98003 -12.87001 -12.84223 -12.66993 -12.34433 -12.27210 -12.13588 -12.07062 -11.19885 -11.02088 -10.66964 -10.34467 -9.71694 -9.56572 -8.96856 -8.26887 -6.44443 0.47139 1.40638 1.44082 1.55206 1.60923 1.78596 2.31846 2.35972 2.41081 2.99564 3.57470 3.77621 3.92968 3.95745 4.09121 4.21182 4.28114 4.31130 4.34112 4.49672 4.62464 4.64975 4.71713 4.79354 4.83393 5.00762 5.07418 5.10668 5.16513 5.27051 5.30135 5.39010 5.44814 5.74407 5.92693 6.00374 6.03732 6.35258 6.57688 6.66967 7.10960 7.27622 7.34510 8.78827 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036420 B = 0.004429 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.617449 B = 6320.994854 C = 6778.909658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.045 3.955 3 C -0.219 4.219 4 C -0.144 4.144 5 C -0.088 4.088 6 C 0.582 3.418 7 O -0.605 6.605 8 N -0.602 5.602 9 C 0.103 3.897 10 C -0.114 4.114 11 C 0.232 3.768 12 O -0.588 6.588 13 C -0.555 4.555 14 H 0.073 0.927 15 C 0.025 3.975 16 N -0.919 5.919 17 Si 0.967 3.033 18 H -0.262 1.262 19 H -0.279 1.279 20 H -0.284 1.284 21 C 0.113 3.887 22 N -0.419 5.419 23 C 0.060 3.940 24 H 0.086 0.914 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.171 0.829 28 H 0.167 0.833 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.375 0.625 34 H 0.270 0.730 35 H 0.045 0.955 36 H 0.042 0.958 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.571 8.798 -3.952 18.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 C -0.243 4.243 4 C -0.170 4.170 5 C -0.200 4.200 6 C 0.374 3.626 7 O -0.490 6.490 8 N -0.332 5.332 9 C -0.019 4.019 10 C -0.152 4.152 11 C 0.192 3.808 12 O -0.397 6.397 13 C -0.593 4.593 14 H 0.091 0.909 15 C -0.176 4.176 16 N -0.559 5.559 17 Si 0.792 3.208 18 H -0.186 1.186 19 H -0.205 1.205 20 H -0.210 1.210 21 C -0.010 4.010 22 N -0.094 5.094 23 C -0.081 4.081 24 H 0.104 0.896 25 H 0.122 0.878 26 H 0.094 0.906 27 H 0.189 0.811 28 H 0.185 0.815 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.225 0.775 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.134 0.866 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.995 8.215 -4.055 18.433 hybrid contribution 1.460 -1.676 0.137 2.227 sum -14.535 6.539 -3.918 16.413 Atomic orbital electron populations 1.20538 0.84555 1.04909 1.04045 1.21369 0.95648 0.85083 1.05142 1.21033 0.91547 0.99179 1.12498 1.22250 0.99916 0.91496 1.03345 1.19831 0.84180 0.94198 1.21753 1.17206 0.82296 0.86497 0.76557 1.90672 1.86349 1.16958 1.55043 1.48381 1.05332 1.09578 1.69898 1.22543 0.96671 0.80342 1.02314 1.22696 0.93462 0.97383 1.01623 1.19870 0.91215 0.91109 0.78617 1.86075 1.89578 1.41381 1.22639 1.21863 0.97418 1.02730 1.37316 0.90932 1.25864 1.02221 0.95708 0.93796 1.69788 1.37953 1.09444 1.38677 0.85368 0.79338 0.78124 0.77973 1.18566 1.20510 1.20951 1.22857 0.82717 0.96256 0.99163 1.43978 1.04169 1.07677 1.53536 1.22339 1.02354 0.79176 1.04184 0.89554 0.87764 0.90596 0.81149 0.81547 0.90156 0.88699 0.89225 0.88969 0.77530 0.92086 0.93659 0.93916 0.90373 0.86638 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.08 71.24 0.72 -0.34 16 2 C 0.05 1.03 6.87 41.34 0.28 1.32 16 3 C -0.22 -5.15 10.71 22.01 0.24 -4.91 16 4 C -0.14 -4.21 9.32 22.57 0.21 -4.00 16 5 C -0.09 -3.15 6.86 40.35 0.28 -2.88 16 6 C 0.58 25.91 7.81 86.45 0.67 26.59 16 7 O -0.60 -30.64 14.85 -4.34 -0.06 -30.71 16 8 N -0.60 -26.45 3.33 -816.48 -2.72 -29.16 16 9 C 0.10 3.59 4.98 86.73 0.43 4.02 16 10 C -0.11 -4.37 6.13 31.78 0.19 -4.18 16 11 C 0.23 11.44 0.89 -10.15 -0.01 11.44 16 12 O -0.59 -30.99 13.19 -148.98 -1.96 -32.95 16 13 C -0.56 -29.01 8.26 25.60 0.21 -28.80 16 14 H 0.07 3.64 7.78 -2.91 -0.02 3.62 16 15 C 0.02 1.30 5.27 84.65 0.45 1.74 16 16 N -0.92 -50.77 10.68 21.45 0.23 -50.54 16 17 Si 0.97 41.91 29.54 68.60 2.03 43.94 16 18 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 19 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 C 0.11 5.75 5.49 86.86 0.48 6.23 16 22 N -0.42 -12.51 3.16 -519.71 -1.64 -14.15 16 23 C 0.06 1.54 10.51 127.77 1.34 2.89 16 24 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.08 0.80 7.10 -2.39 -0.02 0.79 16 27 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 28 H 0.17 4.30 4.43 -2.92 -0.01 4.29 16 29 H 0.08 2.62 6.75 -2.39 -0.02 2.61 16 30 H 0.10 2.69 7.09 -2.39 -0.02 2.67 16 31 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 32 H 0.09 3.25 8.02 -2.39 -0.02 3.24 16 33 H 0.38 20.82 7.18 -74.05 -0.53 20.29 16 34 H 0.27 14.24 8.31 -92.70 -0.77 13.47 16 35 H 0.05 2.38 8.03 -2.39 -0.02 2.36 16 36 H 0.04 2.49 7.52 -2.39 -0.02 2.47 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.12 1.96 7.13 -2.39 -0.02 1.95 16 39 H 0.08 2.55 5.96 -2.39 -0.01 2.53 16 Total: -1.00 -69.45 315.14 1.91 -67.54 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: 0.54 Total: 36.91 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 5.49 Total: 9.12 kcal Atomic # 7 Polarization: -89.72 SS G_CDS: -4.13 Total: -93.85 kcal Atomic # 8 Polarization: -61.63 SS G_CDS: -2.03 Total: -63.66 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -69.45 1.91 -67.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.711 kcal (2) G-P(sol) polarization free energy of solvation -69.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds