Wall clock time and date at job start Tue Mar 31 2020 00:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34485 * 125.57320 * 2 1 4 4 C 1.46691 * 106.33273 * 179.97438 * 3 2 1 5 5 C 1.47266 * 126.94133 * 179.97438 * 4 3 2 6 6 O 1.21632 * 119.99700 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99985 * 0.02562 * 5 4 3 8 8 C 1.47017 * 125.64910 * 359.68859 * 7 5 4 9 9 C 1.54337 * 107.26553 * 178.85634 * 8 7 5 10 10 C 1.55151 * 103.01768 * 338.13760 * 9 8 7 11 11 O 1.42899 * 111.00765 * 277.23327 * 10 9 8 12 12 C 1.50701 * 111.00266 * 153.38490 * 10 9 8 13 13 H 1.07998 * 119.99863 * 6.35230 * 12 10 9 14 14 C 1.37883 * 119.99979 * 186.34940 * 12 10 9 15 15 N 1.31511 * 119.99755 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99922 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46909 * 60.00342 * 16 14 12 18 18 H 1.48506 * 109.47127 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47454 * 300.00267 * 16 14 12 20 20 C 1.47418 * 125.64441 * 180.02562 * 7 5 4 21 21 C 1.36775 * 106.11451 * 0.21902 * 4 3 2 22 22 C 1.50696 * 125.79882 * 179.77896 * 21 4 3 23 23 N 1.34658 * 108.39436 * 359.63883 * 21 4 3 24 24 H 0.96998 * 124.84589 * 180.13008 * 23 21 4 25 25 H 1.08997 * 109.47174 * 90.00121 * 1 2 3 26 26 H 1.08999 * 109.47178 * 210.00618 * 1 2 3 27 27 H 1.09005 * 109.47132 * 330.00570 * 1 2 3 28 28 H 1.07996 * 126.83449 * 359.93480 * 3 2 1 29 29 H 1.09007 * 109.88273 * 298.39826 * 8 7 5 30 30 H 1.08996 * 109.88263 * 59.56070 * 8 7 5 31 31 H 1.09001 * 110.84452 * 219.67492 * 9 8 7 32 32 H 1.08998 * 110.66813 * 96.52269 * 9 8 7 33 33 H 0.96706 * 114.00390 * 173.64922 * 11 10 9 34 34 H 0.97002 * 119.99988 * 179.97438 * 15 14 12 35 35 H 1.09000 * 110.37106 * 322.92557 * 20 7 5 36 36 H 1.09000 * 110.36938 * 85.14019 * 20 7 5 37 37 H 1.08997 * 109.47134 * 90.00309 * 22 21 4 38 38 H 1.09004 * 109.46887 * 210.00222 * 22 21 4 39 39 H 1.08999 * 109.47539 * 330.00040 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0939 0.0000 4 6 3.6743 0.6105 0.0006 5 6 4.8978 1.4301 0.0003 6 8 5.9893 0.8934 0.0005 7 7 4.8080 2.7749 -0.0001 8 6 3.5590 3.5502 -0.0068 9 6 3.9468 5.0438 0.0248 10 6 5.3834 5.0195 0.6103 11 8 5.3539 4.9471 2.0372 12 6 6.1751 6.2158 0.1487 13 1 5.6916 6.9967 -0.4195 14 6 7.5167 6.3133 0.4516 15 7 8.1054 5.3621 1.1431 16 14 8.4982 7.7959 -0.1212 17 1 7.9096 9.0317 0.4546 18 1 9.9064 7.6619 0.3307 19 1 8.4587 7.8730 -1.6036 20 6 5.9462 3.7118 -0.0009 21 6 3.5997 -0.7552 -0.0041 22 6 4.7721 -1.7021 -0.0100 23 7 2.3007 -1.1099 0.0007 24 1 1.9757 -2.0238 0.0006 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3634 0.8901 0.5138 28 1 1.9629 2.1233 -0.0010 29 1 2.9918 3.3316 -0.9116 30 1 2.9654 3.3045 0.8737 31 1 3.2751 5.6053 0.6742 32 1 3.9475 5.4624 -0.9816 33 1 6.2239 4.8320 2.4433 34 1 9.0493 5.4305 1.3559 35 1 6.7576 3.3238 0.6148 36 1 6.2936 3.8858 -1.0193 37 1 5.0570 -1.9340 1.0161 38 1 4.4944 -2.6209 -0.5266 39 1 5.6128 -1.2362 -0.5241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592841311.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:57 Heat of formation + Delta-G solvation = -42.186995 kcal Electronic energy + Delta-G solvation = -22148.615115 eV Core-core repulsion = 18863.741497 eV Total energy + Delta-G solvation = -3284.873618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.18470 -38.85171 -36.88189 -34.17946 -32.53660 -32.15725 -31.09256 -29.87802 -29.08591 -27.65939 -25.49807 -24.48706 -22.67637 -21.08333 -20.31804 -19.47170 -17.85814 -17.08953 -16.74547 -15.59456 -15.18422 -15.11573 -14.56604 -14.48133 -14.06395 -13.60939 -13.31454 -13.23040 -12.88857 -12.80468 -12.71489 -12.52030 -12.25189 -12.06003 -11.77854 -11.50226 -11.33089 -11.19273 -10.95972 -10.64149 -10.47558 -10.41025 -10.11397 -9.27725 -9.11370 -8.63415 -8.61817 -8.26479 -7.93561 -7.52001 -6.20302 -4.30098 2.05557 2.53962 3.18438 3.26749 3.32259 3.34093 3.97588 4.12603 4.32855 4.82307 4.97175 5.06478 5.10942 5.31562 5.38567 5.40935 5.55236 5.68805 5.72519 5.75725 5.81388 5.95235 6.02008 6.06702 6.17106 6.28583 6.46093 6.62501 6.82830 6.95298 6.98680 7.07667 7.24178 7.37039 7.47962 7.55401 7.81383 8.11134 8.47877 8.73218 9.05180 9.37737 9.46103 10.86630 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030092 B = 0.004642 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.271596 B = 6030.141218 C = 6659.088643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.002 4.002 3 C -0.170 4.170 4 C -0.216 4.216 5 C 0.594 3.406 6 O -0.563 6.563 7 N -0.603 5.603 8 C 0.106 3.894 9 C -0.121 4.121 10 C 0.249 3.751 11 O -0.583 6.583 12 C -0.538 4.538 13 H 0.065 0.935 14 C 0.072 3.928 15 N -0.892 5.892 16 Si 0.903 3.097 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.098 3.902 21 C 0.094 3.906 22 C -0.091 4.091 23 N -0.553 5.553 24 H 0.410 0.590 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.155 0.845 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.380 0.620 34 H 0.270 0.730 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.146 -11.252 -2.596 17.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C -0.194 4.194 4 C -0.226 4.226 5 C 0.384 3.616 6 O -0.444 6.444 7 N -0.335 5.335 8 C -0.017 4.017 9 C -0.159 4.159 10 C 0.208 3.792 11 O -0.391 6.391 12 C -0.577 4.577 13 H 0.083 0.917 14 C -0.132 4.132 15 N -0.531 5.531 16 Si 0.730 3.270 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.024 4.024 21 C -0.023 4.023 22 C -0.148 4.148 23 N -0.150 5.150 24 H 0.246 0.754 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.172 0.828 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.230 0.770 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.096 -11.674 -2.617 17.738 hybrid contribution 0.966 0.304 -0.221 1.036 sum -12.130 -11.370 -2.838 16.866 Atomic orbital electron populations 1.20281 0.87997 1.03106 1.02427 1.20214 0.93298 0.86113 1.11415 1.22421 0.91083 0.98278 1.07594 1.20287 0.93319 0.92101 1.16894 1.16974 0.87437 0.80610 0.76564 1.90689 1.28842 1.71717 1.53202 1.48463 1.09311 1.04521 1.71171 1.22223 0.87213 0.92568 0.99717 1.22669 0.98815 0.93322 1.01103 1.19613 0.89614 0.90775 0.79190 1.86105 1.35733 1.96228 1.21025 1.21441 0.94276 1.05979 1.35971 0.91653 1.25072 0.97663 0.96371 0.94070 1.69720 1.12305 1.32621 1.38422 0.86482 0.78752 0.82601 0.79157 1.20050 1.21129 1.20053 1.23198 0.88509 0.89625 1.01058 1.20246 0.84662 0.94320 1.03046 1.20531 0.94906 0.96112 1.03282 1.41464 1.05340 1.08438 1.59709 0.75445 0.91255 0.92081 0.90064 0.82798 0.92534 0.91933 0.90866 0.90548 0.77008 0.92017 0.89630 0.92391 0.90688 0.92337 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.41 36.00 0.37 -0.26 16 2 C 0.00 -0.02 7.13 -81.87 -0.58 -0.60 16 3 C -0.17 -2.55 9.28 -37.50 -0.35 -2.90 16 4 C -0.22 -3.89 6.23 -103.35 -0.64 -4.53 16 5 C 0.59 13.09 7.84 -12.59 -0.10 12.99 16 6 O -0.56 -13.80 15.07 5.25 0.08 -13.72 16 7 N -0.60 -13.39 3.33 -171.83 -0.57 -13.96 16 8 C 0.11 1.99 4.99 -3.06 -0.02 1.97 16 9 C -0.12 -2.48 6.13 -24.89 -0.15 -2.63 16 10 C 0.25 6.18 0.87 -89.61 -0.08 6.10 16 11 O -0.58 -15.25 13.16 -35.23 -0.46 -15.72 16 12 C -0.54 -14.28 8.27 -34.44 -0.28 -14.56 16 13 H 0.07 1.69 7.79 -52.49 -0.41 1.28 16 14 C 0.07 1.90 5.29 -17.82 -0.09 1.80 16 15 N -0.89 -24.30 10.69 55.43 0.59 -23.70 16 16 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 C 0.10 2.45 5.38 -2.52 -0.01 2.43 16 21 C 0.09 1.40 7.17 -81.88 -0.59 0.81 16 22 C -0.09 -1.18 9.88 36.00 0.36 -0.83 16 23 N -0.55 -6.29 5.90 -5.42 -0.03 -6.32 16 24 H 0.41 3.12 8.96 -40.82 -0.37 2.76 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.15 2.16 4.80 -52.49 -0.25 1.90 16 29 H 0.06 0.92 7.03 -51.93 -0.37 0.55 16 30 H 0.06 1.12 6.82 -51.93 -0.35 0.77 16 31 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.08 1.47 8.03 -51.93 -0.42 1.06 16 33 H 0.38 10.20 7.57 45.56 0.34 10.55 16 34 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.09 2.40 7.33 -51.93 -0.38 2.02 16 36 H 0.06 1.50 8.03 -51.93 -0.42 1.08 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 1.61 6.47 -51.93 -0.34 1.28 16 LS Contribution 317.87 15.07 4.79 4.79 Total: -1.00 -31.79 317.87 -7.42 -39.21 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -4.62 Total: 14.01 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.17 Total: -0.21 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -0.01 Total: -43.99 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.38 Total: -29.44 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.79 -7.42 -39.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841311.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.981 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds