Wall clock time and date at job start Tue Mar 31 2020 00:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34485 * 125.57320 * 2 1 4 4 C 1.46691 * 106.33273 * 179.97438 * 3 2 1 5 5 C 1.47266 * 126.94133 * 179.97438 * 4 3 2 6 6 O 1.21632 * 119.99700 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99985 * 0.02562 * 5 4 3 8 8 C 1.47017 * 125.64910 * 359.68859 * 7 5 4 9 9 C 1.54337 * 107.26553 * 178.85634 * 8 7 5 10 10 C 1.55151 * 103.01768 * 338.13760 * 9 8 7 11 11 O 1.42899 * 111.00765 * 277.23327 * 10 9 8 12 12 C 1.50701 * 111.00266 * 153.38490 * 10 9 8 13 13 H 1.07998 * 119.99863 * 6.35230 * 12 10 9 14 14 C 1.37883 * 119.99979 * 186.34940 * 12 10 9 15 15 N 1.31511 * 119.99755 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99922 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46909 * 60.00342 * 16 14 12 18 18 H 1.48506 * 109.47127 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47454 * 300.00267 * 16 14 12 20 20 C 1.47418 * 125.64441 * 180.02562 * 7 5 4 21 21 C 1.36775 * 106.11451 * 0.21902 * 4 3 2 22 22 C 1.50696 * 125.79882 * 179.77896 * 21 4 3 23 23 N 1.34658 * 108.39436 * 359.63883 * 21 4 3 24 24 H 0.96998 * 124.84589 * 180.13008 * 23 21 4 25 25 H 1.08997 * 109.47174 * 90.00121 * 1 2 3 26 26 H 1.08999 * 109.47178 * 210.00618 * 1 2 3 27 27 H 1.09005 * 109.47132 * 330.00570 * 1 2 3 28 28 H 1.07996 * 126.83449 * 359.93480 * 3 2 1 29 29 H 1.09007 * 109.88273 * 298.39826 * 8 7 5 30 30 H 1.08996 * 109.88263 * 59.56070 * 8 7 5 31 31 H 1.09001 * 110.84452 * 219.67492 * 9 8 7 32 32 H 1.08998 * 110.66813 * 96.52269 * 9 8 7 33 33 H 0.96706 * 114.00390 * 173.64922 * 11 10 9 34 34 H 0.97002 * 119.99988 * 179.97438 * 15 14 12 35 35 H 1.09000 * 110.37106 * 322.92557 * 20 7 5 36 36 H 1.09000 * 110.36938 * 85.14019 * 20 7 5 37 37 H 1.08997 * 109.47134 * 90.00309 * 22 21 4 38 38 H 1.09004 * 109.46887 * 210.00222 * 22 21 4 39 39 H 1.08999 * 109.47539 * 330.00040 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0939 0.0000 4 6 3.6743 0.6105 0.0006 5 6 4.8978 1.4301 0.0003 6 8 5.9893 0.8934 0.0005 7 7 4.8080 2.7749 -0.0001 8 6 3.5590 3.5502 -0.0068 9 6 3.9468 5.0438 0.0248 10 6 5.3834 5.0195 0.6103 11 8 5.3539 4.9471 2.0372 12 6 6.1751 6.2158 0.1487 13 1 5.6916 6.9967 -0.4195 14 6 7.5167 6.3133 0.4516 15 7 8.1054 5.3621 1.1431 16 14 8.4982 7.7959 -0.1212 17 1 7.9096 9.0317 0.4546 18 1 9.9064 7.6619 0.3307 19 1 8.4587 7.8730 -1.6036 20 6 5.9462 3.7118 -0.0009 21 6 3.5997 -0.7552 -0.0041 22 6 4.7721 -1.7021 -0.0100 23 7 2.3007 -1.1099 0.0007 24 1 1.9757 -2.0238 0.0006 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3634 0.8901 0.5138 28 1 1.9629 2.1233 -0.0010 29 1 2.9918 3.3316 -0.9116 30 1 2.9654 3.3045 0.8737 31 1 3.2751 5.6053 0.6742 32 1 3.9475 5.4624 -0.9816 33 1 6.2239 4.8320 2.4433 34 1 9.0493 5.4305 1.3559 35 1 6.7576 3.3238 0.6148 36 1 6.2936 3.8858 -1.0193 37 1 5.0570 -1.9340 1.0161 38 1 4.4944 -2.6209 -0.5266 39 1 5.6128 -1.2362 -0.5241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592841311.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:57 Heat of formation + Delta-G solvation = -65.743529 kcal Electronic energy + Delta-G solvation = -22149.636603 eV Core-core repulsion = 18863.741497 eV Total energy + Delta-G solvation = -3285.895106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.30014 -40.55095 -38.69094 -36.05267 -34.22502 -33.49797 -32.44485 -31.48315 -29.98362 -29.46771 -27.26792 -25.84624 -24.15728 -22.50866 -21.58868 -21.19642 -19.37771 -19.03962 -17.97902 -17.18583 -16.89964 -16.66970 -16.31917 -15.78261 -15.74633 -14.87092 -14.75703 -14.55961 -14.48584 -14.09529 -13.99167 -13.72927 -13.49215 -13.39584 -13.14177 -12.96452 -12.88843 -12.78637 -12.41965 -12.35418 -12.26794 -12.16289 -12.07443 -11.15408 -10.83986 -10.62792 -10.27761 -9.80785 -9.42677 -8.88068 -8.22625 -6.40691 0.76340 1.44261 1.44825 1.48006 1.53318 2.11058 2.37816 2.47417 2.58582 3.03148 3.78878 3.86583 3.91018 4.09417 4.16642 4.26413 4.32858 4.46443 4.53374 4.58594 4.69413 4.75092 4.77804 4.88189 4.93729 5.06581 5.08083 5.11664 5.20387 5.33350 5.36072 5.45423 5.53963 5.76705 5.83737 6.03514 6.09540 6.65745 6.68186 6.83248 7.27985 7.35874 7.36787 8.82538 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030092 B = 0.004642 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.271596 B = 6030.141218 C = 6659.088643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.022 3.978 3 C -0.196 4.196 4 C -0.262 4.262 5 C 0.582 3.418 6 O -0.605 6.605 7 N -0.612 5.612 8 C 0.112 3.888 9 C -0.115 4.115 10 C 0.233 3.767 11 O -0.588 6.588 12 C -0.559 4.559 13 H 0.070 0.930 14 C 0.025 3.975 15 N -0.917 5.917 16 Si 0.966 3.034 17 H -0.268 1.268 18 H -0.286 1.286 19 H -0.269 1.269 20 C 0.112 3.888 21 C 0.099 3.901 22 C -0.089 4.089 23 N -0.532 5.532 24 H 0.432 0.568 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.160 0.840 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.372 0.628 34 H 0.269 0.731 35 H 0.044 0.956 36 H 0.038 0.962 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.241 -12.048 -3.258 20.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 C -0.220 4.220 4 C -0.272 4.272 5 C 0.375 3.625 6 O -0.490 6.490 7 N -0.343 5.343 8 C -0.009 4.009 9 C -0.153 4.153 10 C 0.193 3.807 11 O -0.395 6.395 12 C -0.597 4.597 13 H 0.088 0.912 14 C -0.175 4.175 15 N -0.556 5.556 16 Si 0.791 3.209 17 H -0.193 1.193 18 H -0.211 1.211 19 H -0.194 1.194 20 C -0.011 4.011 21 C -0.020 4.020 22 C -0.146 4.146 23 N -0.130 5.130 24 H 0.272 0.728 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.108 0.892 28 H 0.178 0.822 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.220 0.780 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.260 -12.485 -3.286 20.762 hybrid contribution 1.884 0.454 -0.010 1.938 sum -14.375 -12.031 -3.296 19.033 Atomic orbital electron populations 1.20446 0.84462 1.04726 1.03997 1.20797 0.95125 0.85082 1.07806 1.22510 0.89911 0.99734 1.09795 1.20149 0.92892 0.93267 1.20889 1.17748 0.88589 0.80645 0.75506 1.90645 1.30825 1.72398 1.55098 1.48539 1.09450 1.04758 1.71533 1.22358 0.85994 0.90799 1.01794 1.22689 0.96047 0.94940 1.01622 1.19848 0.92448 0.89974 0.78424 1.86095 1.35125 1.96234 1.22046 1.21791 0.94957 1.06677 1.36241 0.91198 1.25863 0.98696 0.98881 0.94106 1.69857 1.12341 1.34142 1.39234 0.85486 0.77141 0.79424 0.78843 1.19312 1.21130 1.19430 1.22749 0.88722 0.90737 0.98912 1.20364 0.86410 0.93563 1.01653 1.20503 0.93394 0.97135 1.03589 1.41443 1.03964 1.09753 1.57855 0.72799 0.89566 0.89744 0.89232 0.82233 0.89408 0.90780 0.89481 0.89302 0.77966 0.92207 0.93779 0.94330 0.90346 0.88309 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.41 71.23 0.74 -0.11 16 2 C 0.02 0.44 7.13 40.98 0.29 0.73 16 3 C -0.20 -5.49 9.28 23.62 0.22 -5.27 16 4 C -0.26 -9.36 6.23 -19.04 -0.12 -9.48 16 5 C 0.58 26.70 7.84 86.62 0.68 27.38 16 6 O -0.60 -31.63 15.07 -4.13 -0.06 -31.69 16 7 N -0.61 -28.01 3.33 -815.78 -2.71 -30.73 16 8 C 0.11 4.13 4.99 86.73 0.43 4.56 16 9 C -0.12 -4.63 6.13 31.79 0.19 -4.44 16 10 C 0.23 11.87 0.87 -10.14 -0.01 11.86 16 11 O -0.59 -31.70 13.16 -148.98 -1.96 -33.66 16 12 C -0.56 -30.08 8.27 25.60 0.21 -29.87 16 13 H 0.07 3.61 7.79 -2.91 -0.02 3.58 16 14 C 0.03 1.37 5.29 84.66 0.45 1.82 16 15 N -0.92 -51.92 10.69 21.45 0.23 -51.69 16 16 Si 0.97 42.81 29.54 68.60 2.03 44.84 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 18 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 C 0.11 5.92 5.38 86.86 0.47 6.38 16 21 C 0.10 2.80 7.17 41.78 0.30 3.10 16 22 C -0.09 -2.24 9.88 71.23 0.70 -1.54 16 23 N -0.53 -10.25 5.90 -171.07 -1.01 -11.26 16 24 H 0.43 4.61 8.96 -92.71 -0.83 3.78 16 25 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.16 4.10 4.80 -2.91 -0.01 4.08 16 29 H 0.09 2.68 7.03 -2.38 -0.02 2.67 16 30 H 0.07 2.55 6.82 -2.39 -0.02 2.54 16 31 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 32 H 0.09 3.31 8.03 -2.39 -0.02 3.29 16 33 H 0.37 20.99 7.57 -74.05 -0.56 20.43 16 34 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 35 H 0.04 2.65 7.33 -2.39 -0.02 2.64 16 36 H 0.04 2.12 8.03 -2.39 -0.02 2.10 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.07 2.26 6.47 -2.39 -0.02 2.25 16 Total: -1.00 -73.31 317.87 0.77 -72.54 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: -0.30 Total: 36.52 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 4.56 Total: 5.13 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -3.49 Total: -93.68 kcal Atomic # 8 Polarization: -63.33 SS G_CDS: -2.02 Total: -65.35 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -73.31 0.77 -72.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841311.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.794 kcal (2) G-P(sol) polarization free energy of solvation -73.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds