Wall clock time and date at job start Tue Mar 31 2020 00:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34480 * 125.57084 * 2 1 4 4 C 1.46683 * 106.33128 * 179.97438 * 3 2 1 5 5 C 1.47264 * 126.94172 * 179.97438 * 4 3 2 6 6 O 1.21626 * 120.00169 * 180.02562 * 5 4 3 7 7 N 1.34773 * 120.00054 * 0.03115 * 5 4 3 8 8 C 1.47019 * 125.64873 * 0.02562 * 7 5 4 9 9 C 1.54324 * 107.27521 * 180.79674 * 8 7 5 10 10 C 1.55159 * 102.93956 * 22.19266 * 9 8 7 11 11 O 1.42898 * 111.00556 * 82.57368 * 10 9 8 12 12 C 1.50700 * 111.00577 * 206.38507 * 10 9 8 13 13 H 1.08003 * 120.00010 * 354.75346 * 12 10 9 14 14 C 1.37877 * 120.00368 * 174.75004 * 12 10 9 15 15 N 1.31520 * 119.99565 * 4.93493 * 14 12 10 16 16 Si 1.86798 * 120.00269 * 184.92752 * 14 12 10 17 17 H 1.48503 * 109.46956 * 95.00248 * 16 14 12 18 18 H 1.48503 * 109.47303 * 215.00378 * 16 14 12 19 19 H 1.48498 * 109.47040 * 335.00309 * 16 14 12 20 20 C 1.47425 * 125.64792 * 179.71273 * 7 5 4 21 21 C 1.36765 * 106.11636 * 0.24020 * 4 3 2 22 22 C 1.50707 * 125.80329 * 179.72379 * 21 4 3 23 23 N 1.34661 * 108.39714 * 359.60616 * 21 4 3 24 24 H 0.97001 * 124.85355 * 180.17855 * 23 21 4 25 25 H 1.09000 * 109.47203 * 90.00868 * 1 2 3 26 26 H 1.09004 * 109.47600 * 210.00391 * 1 2 3 27 27 H 1.09000 * 109.47517 * 330.00661 * 1 2 3 28 28 H 1.08003 * 126.83480 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.88073 * 300.21347 * 8 7 5 30 30 H 1.08995 * 109.88688 * 61.22556 * 8 7 5 31 31 H 1.08996 * 110.72244 * 140.55098 * 9 8 7 32 32 H 1.08997 * 110.72014 * 263.83392 * 9 8 7 33 33 H 0.96705 * 114.00085 * 179.97438 * 11 10 9 34 34 H 0.97003 * 119.99366 * 179.97438 * 15 14 12 35 35 H 1.08997 * 110.36926 * 274.96726 * 20 7 5 36 36 H 1.08998 * 110.36970 * 37.29837 * 20 7 5 37 37 H 1.08998 * 109.46832 * 89.99407 * 22 21 4 38 38 H 1.08991 * 109.47185 * 209.99643 * 22 21 4 39 39 H 1.09008 * 109.46957 * 329.99877 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0939 0.0000 4 6 3.6742 0.6105 0.0006 5 6 4.8977 1.4301 0.0003 6 8 5.9892 0.8935 0.0005 7 7 4.8079 2.7749 0.0000 8 6 3.5588 3.5503 0.0005 9 6 3.9466 5.0438 -0.0206 10 6 5.3846 5.0213 -0.6029 11 8 5.3583 4.9528 -2.0300 12 6 6.1749 6.2168 -0.1369 13 1 5.6941 6.9877 0.4471 14 6 7.5118 6.3265 -0.4559 15 7 8.0739 5.4390 -1.2472 16 14 8.5245 7.7356 0.2356 17 1 9.2199 7.2869 1.4687 18 1 9.5288 8.1641 -0.7710 19 1 7.6300 8.8760 0.5588 20 6 5.9460 3.7119 0.0057 21 6 3.5997 -0.7551 -0.0046 22 6 4.7721 -1.7020 -0.0119 23 7 2.3007 -1.1099 0.0007 24 1 1.9756 -2.0238 0.0011 25 1 -0.3633 -0.0002 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.9628 2.1234 -0.0004 29 1 2.9714 3.3073 -0.8849 30 1 2.9841 3.3269 0.8993 31 1 3.2765 5.6071 -0.6699 32 1 3.9455 5.4568 0.9881 33 1 6.2344 4.9369 -2.4392 34 1 9.0143 5.5164 -1.4719 35 1 6.2901 3.8847 1.0254 36 1 6.7586 3.3256 -0.6095 37 1 5.0579 -1.9342 1.0140 38 1 4.4940 -2.6206 -0.5284 39 1 5.6124 -1.2358 -0.5265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592841312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:00 Heat of formation + Delta-G solvation = -66.019459 kcal Electronic energy + Delta-G solvation = -22145.483194 eV Core-core repulsion = 18859.576122 eV Total energy + Delta-G solvation = -3285.907071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.30399 -40.55206 -38.69441 -36.07181 -34.19162 -33.49968 -32.45558 -31.48321 -29.98597 -29.49737 -27.27015 -25.85017 -24.15735 -22.51477 -21.58143 -21.19817 -19.38395 -19.08063 -17.98540 -17.17745 -16.91337 -16.65308 -16.34142 -15.79652 -15.69805 -14.86743 -14.78462 -14.56238 -14.47559 -14.08912 -13.99893 -13.73075 -13.49425 -13.38861 -13.18975 -12.97302 -12.88482 -12.82589 -12.40617 -12.33751 -12.27275 -12.14459 -12.07344 -11.18428 -10.83809 -10.62389 -10.29125 -9.81033 -9.42654 -8.88272 -8.25034 -6.42241 0.76010 1.42487 1.44338 1.47789 1.54996 2.10445 2.37171 2.46818 2.58164 3.01610 3.79494 3.85990 3.90718 4.09968 4.16633 4.26144 4.33080 4.46018 4.53233 4.58628 4.69233 4.75115 4.76731 4.87949 4.93484 5.04464 5.07751 5.11063 5.20323 5.33165 5.36022 5.46666 5.52475 5.76565 5.83467 6.02915 6.06944 6.64820 6.67975 6.82721 7.28946 7.35928 7.38739 8.80905 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029845 B = 0.004643 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.969323 B = 6029.290043 C = 6643.322923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.022 3.978 3 C -0.196 4.196 4 C -0.262 4.262 5 C 0.582 3.418 6 O -0.605 6.605 7 N -0.611 5.611 8 C 0.113 3.887 9 C -0.115 4.115 10 C 0.233 3.767 11 O -0.591 6.591 12 C -0.558 4.558 13 H 0.071 0.929 14 C 0.025 3.975 15 N -0.918 5.918 16 Si 0.967 3.033 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.262 1.262 20 C 0.110 3.890 21 C 0.099 3.901 22 C -0.089 4.089 23 N -0.532 5.532 24 H 0.432 0.568 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.160 0.840 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.375 0.625 34 H 0.270 0.730 35 H 0.041 0.959 36 H 0.040 0.960 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.163 -12.031 3.519 20.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 C -0.220 4.220 4 C -0.272 4.272 5 C 0.375 3.625 6 O -0.490 6.490 7 N -0.342 5.342 8 C -0.009 4.009 9 C -0.153 4.153 10 C 0.192 3.808 11 O -0.399 6.399 12 C -0.596 4.596 13 H 0.089 0.911 14 C -0.176 4.176 15 N -0.557 5.557 16 Si 0.792 3.208 17 H -0.204 1.204 18 H -0.208 1.208 19 H -0.187 1.187 20 C -0.013 4.013 21 C -0.020 4.020 22 C -0.146 4.146 23 N -0.130 5.130 24 H 0.272 0.728 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.178 0.822 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.225 0.775 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.116 0.884 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.191 -12.530 3.541 20.777 hybrid contribution 1.915 0.457 0.042 1.969 sum -14.276 -12.073 3.583 19.037 Atomic orbital electron populations 1.20448 0.84454 1.04828 1.03906 1.20796 0.95129 0.85079 1.07795 1.22509 0.89906 0.99741 1.09795 1.20140 0.92885 0.93268 1.20911 1.17751 0.88604 0.80639 0.75496 1.90642 1.30826 1.72407 1.55121 1.48511 1.09415 1.04737 1.71520 1.22357 0.85950 0.90837 1.01795 1.22696 0.96033 0.94905 1.01669 1.19859 0.92471 0.89880 0.78541 1.86063 1.35010 1.96958 1.21881 1.21841 0.95356 1.07193 1.35228 0.91065 1.25877 0.98886 0.98567 0.94251 1.69777 1.13411 1.36941 1.35602 0.85408 0.78225 0.79238 0.77958 1.20367 1.20847 1.18653 1.22750 0.88800 0.90934 0.98846 1.20364 0.86417 0.93559 1.01638 1.20505 0.93341 0.97074 1.03697 1.41443 1.03959 1.09756 1.57852 0.72789 0.89844 0.89627 0.89060 0.82228 0.90902 0.89329 0.89494 0.89189 0.77503 0.92073 0.94089 0.94180 0.90017 0.88429 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.41 71.24 0.74 -0.11 16 2 C 0.02 0.44 7.13 40.98 0.29 0.73 16 3 C -0.20 -5.50 9.28 23.62 0.22 -5.28 16 4 C -0.26 -9.38 6.23 -19.04 -0.12 -9.50 16 5 C 0.58 26.76 7.84 86.62 0.68 27.44 16 6 O -0.61 -31.68 15.07 -4.11 -0.06 -31.74 16 7 N -0.61 -28.04 3.33 -815.84 -2.71 -30.75 16 8 C 0.11 4.14 4.99 86.73 0.43 4.57 16 9 C -0.12 -4.64 6.13 31.78 0.19 -4.44 16 10 C 0.23 11.88 0.89 -10.14 -0.01 11.87 16 11 O -0.59 -32.19 13.19 -148.98 -1.96 -34.16 16 12 C -0.56 -29.98 8.26 25.60 0.21 -29.77 16 13 H 0.07 3.67 7.79 -2.91 -0.02 3.65 16 14 C 0.02 1.34 5.26 84.65 0.45 1.78 16 15 N -0.92 -51.87 10.70 21.45 0.23 -51.64 16 16 Si 0.97 42.70 29.54 68.60 2.03 44.72 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 20 C 0.11 5.82 5.50 86.86 0.48 6.29 16 21 C 0.10 2.81 7.17 41.78 0.30 3.11 16 22 C -0.09 -2.24 9.88 71.24 0.70 -1.54 16 23 N -0.53 -10.26 5.90 -171.07 -1.01 -11.27 16 24 H 0.43 4.61 8.96 -92.71 -0.83 3.78 16 25 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.16 4.11 4.79 -2.91 -0.01 4.09 16 29 H 0.07 2.53 6.86 -2.39 -0.02 2.52 16 30 H 0.09 2.70 6.98 -2.39 -0.02 2.68 16 31 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 32 H 0.09 3.34 8.03 -2.39 -0.02 3.32 16 33 H 0.38 21.49 7.18 -74.05 -0.53 20.96 16 34 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.04 2.24 8.03 -2.39 -0.02 2.22 16 36 H 0.04 2.42 7.50 -2.39 -0.02 2.40 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 2.24 6.47 -2.38 -0.02 2.22 16 Total: -1.00 -73.42 317.78 0.80 -72.61 By element: Atomic # 1 Polarization: 37.35 SS G_CDS: -0.27 Total: 37.08 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 4.57 Total: 5.15 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -3.49 Total: -93.67 kcal Atomic # 8 Polarization: -63.87 SS G_CDS: -2.03 Total: -65.90 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -73.42 0.80 -72.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.595 kcal (2) G-P(sol) polarization free energy of solvation -73.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds