Wall clock time and date at job start Tue Mar 31 2020 00:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39835 * 126.45327 * 2 1 4 4 C 1.35452 * 107.86111 * 179.97438 * 3 2 1 5 5 N 1.35531 * 108.87210 * 359.72755 * 4 3 2 6 6 C 1.46510 * 125.68029 * 180.30624 * 5 4 3 7 7 C 1.37647 * 108.64403 * 0.44094 * 5 4 3 8 8 C 1.46678 * 126.23352 * 179.82798 * 7 5 4 9 9 O 1.21696 * 120.00246 * 99.25874 * 8 7 5 10 10 N 1.34772 * 120.00250 * 279.25781 * 8 7 5 11 11 C 1.47027 * 125.64770 * 354.79928 * 10 8 7 12 12 C 1.54322 * 107.27073 * 178.97464 * 11 10 8 13 13 C 1.55152 * 102.94638 * 337.81013 * 12 11 10 14 14 O 1.42909 * 111.00098 * 277.42732 * 13 12 11 15 15 C 1.50697 * 111.03857 * 153.59110 * 13 12 11 16 16 H 1.08001 * 119.99604 * 247.78392 * 15 13 12 17 17 C 1.37878 * 120.00285 * 67.78645 * 15 13 12 18 18 N 1.31518 * 119.99615 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 120.00145 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47215 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47563 * 119.99915 * 19 17 15 22 22 H 1.48503 * 109.46868 * 239.99674 * 19 17 15 23 23 C 1.47428 * 125.65145 * 174.83916 * 10 8 7 24 24 H 1.08998 * 109.46984 * 270.03924 * 1 2 3 25 25 H 1.09001 * 109.47293 * 30.04767 * 1 2 3 26 26 H 1.09004 * 109.47129 * 150.04387 * 1 2 3 27 27 H 1.08001 * 126.07106 * 359.97438 * 3 2 1 28 28 H 1.08004 * 125.56701 * 180.02562 * 4 3 2 29 29 H 1.08998 * 109.46693 * 275.12064 * 6 5 4 30 30 H 1.09001 * 109.46769 * 35.11110 * 6 5 4 31 31 H 1.08994 * 109.47156 * 155.11451 * 6 5 4 32 32 H 1.08999 * 109.88224 * 298.39478 * 11 10 8 33 33 H 1.08999 * 109.88213 * 59.55928 * 11 10 8 34 34 H 1.09000 * 110.71793 * 96.17733 * 12 11 10 35 35 H 1.09010 * 110.72119 * 219.44265 * 12 11 10 36 36 H 0.96697 * 113.99821 * 292.19225 * 14 13 12 37 37 H 0.97006 * 119.99459 * 180.02562 * 18 17 15 38 38 H 1.08996 * 110.36779 * 322.93671 * 23 10 8 39 39 H 1.09003 * 110.36574 * 85.25994 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1248 0.0000 4 6 3.6217 0.6929 0.0006 5 7 3.6283 -0.6624 0.0070 6 6 4.8226 -1.5111 0.0161 7 6 2.3263 -1.1088 0.0006 8 6 1.8899 -2.5092 0.0009 9 8 1.5412 -3.0377 1.0401 10 7 1.8751 -3.2106 -1.1498 11 6 2.1649 -2.6707 -2.4863 12 6 2.0525 -3.8400 -3.4871 13 6 2.2608 -5.0877 -2.5888 14 8 3.6513 -5.3364 -2.3721 15 6 1.5840 -6.2980 -3.1786 16 1 0.7300 -6.7347 -2.6822 17 6 2.0550 -6.8481 -4.3519 18 7 3.0947 -6.3160 -4.9566 19 14 1.2157 -8.3479 -5.0834 20 1 0.0780 -8.7500 -4.2176 21 1 0.7130 -8.0207 -6.4418 22 1 2.1891 -9.4660 -5.1718 23 6 1.5648 -4.6462 -1.2771 24 1 -0.3633 0.0007 1.0277 25 1 -0.3634 0.8896 -0.5146 26 1 -0.3633 -0.8904 -0.5132 27 1 2.0136 2.1549 -0.0004 28 1 4.4973 1.3253 0.0011 29 1 5.1761 -1.6516 -1.0054 30 1 5.6032 -1.0334 0.6082 31 1 4.5769 -2.4793 0.4521 32 1 1.4406 -1.8961 -2.7382 33 1 3.1740 -2.2590 -2.5090 34 1 1.0657 -3.8581 -3.9497 35 1 2.8336 -3.7755 -4.2449 36 1 4.1291 -5.6155 -3.1651 37 1 3.4259 -6.7028 -5.7823 38 1 1.9689 -5.1984 -0.4287 39 1 0.4876 -4.7965 -1.3503 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592850745.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:34 Heat of formation + Delta-G solvation = -34.959306 kcal Electronic energy + Delta-G solvation = -22458.251313 eV Core-core repulsion = 19173.691111 eV Total energy + Delta-G solvation = -3284.560202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.21774 -39.04940 -37.13116 -34.33842 -33.57669 -32.19783 -30.51214 -29.65282 -28.51015 -27.80755 -25.41622 -24.86373 -22.79087 -21.03485 -20.05141 -19.63153 -18.26101 -17.34007 -17.07472 -15.94233 -15.22914 -15.02505 -14.97625 -14.74537 -14.20659 -13.83534 -13.25255 -13.15510 -13.02882 -13.00902 -12.66202 -12.28923 -12.07410 -11.86995 -11.85629 -11.78105 -11.38725 -11.36259 -11.35592 -10.93158 -10.65399 -10.50437 -10.10259 -9.66870 -9.46663 -8.74149 -8.42215 -8.28773 -8.05774 -7.89275 -6.35628 -4.43151 2.07906 2.56904 2.98134 3.15342 3.24674 3.27060 3.29482 3.65366 4.22280 4.81120 4.84888 4.96114 5.10559 5.21105 5.37293 5.45251 5.51179 5.54894 5.71358 5.81256 5.83229 5.89618 5.99248 6.14872 6.17684 6.24356 6.35775 6.49132 6.59016 6.83338 6.90071 7.02476 7.19751 7.24183 7.26441 7.37726 7.68198 7.92050 8.03411 8.52223 8.60132 9.25801 9.39803 10.72256 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030002 B = 0.004817 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.058341 B = 5810.970865 C = 6051.695635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.123 4.123 3 C -0.202 4.202 4 C -0.003 4.003 5 N -0.422 5.422 6 C 0.070 3.930 7 C -0.023 4.023 8 C 0.597 3.403 9 O -0.542 6.542 10 N -0.595 5.595 11 C 0.106 3.894 12 C -0.139 4.139 13 C 0.250 3.750 14 O -0.586 6.586 15 C -0.535 4.535 16 H 0.067 0.933 17 C 0.072 3.928 18 N -0.898 5.898 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.119 3.881 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.138 0.862 28 H 0.164 0.836 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.386 0.614 37 H 0.269 0.731 38 H 0.071 0.929 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.675 12.093 3.856 12.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.131 4.131 3 C -0.226 4.226 4 C -0.136 4.136 5 N -0.097 5.097 6 C -0.072 4.072 7 C -0.137 4.137 8 C 0.383 3.617 9 O -0.420 6.420 10 N -0.327 5.327 11 C -0.017 4.017 12 C -0.177 4.177 13 C 0.209 3.791 14 O -0.396 6.396 15 C -0.573 4.573 16 H 0.085 0.915 17 C -0.130 4.130 18 N -0.538 5.538 19 Si 0.732 3.268 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.002 4.002 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.156 0.844 28 H 0.181 0.819 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.238 0.762 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.765 11.730 4.924 12.843 hybrid contribution -0.047 -0.802 -1.200 1.444 sum 1.718 10.928 3.724 11.673 Atomic orbital electron populations 1.20154 0.89984 1.01918 1.01748 1.19700 0.95223 0.90959 1.07196 1.20594 0.91730 0.98194 1.12088 1.21781 0.99241 0.82508 1.10053 1.43828 1.05152 1.06233 1.54450 1.22132 0.85677 0.95515 1.03852 1.20131 0.83883 0.93664 1.16036 1.16726 0.78689 0.83495 0.82756 1.90800 1.49408 1.70161 1.31593 1.48616 1.66278 1.11367 1.06455 1.22107 0.99227 0.97771 0.82568 1.23216 1.02616 0.94450 0.97456 1.19584 0.80487 0.91357 0.87649 1.86076 1.22355 1.90440 1.40729 1.21517 1.15176 1.12747 1.07851 0.91493 1.24990 0.94726 0.97196 0.96068 1.69570 1.24382 1.40920 1.18953 0.86334 0.79560 0.82071 0.78866 1.19509 1.20772 1.20745 1.22457 0.99462 0.78283 1.00031 0.91757 0.91717 0.92323 0.84419 0.81874 0.90157 0.89671 0.89578 0.92632 0.92900 0.91226 0.89875 0.76184 0.92098 0.91045 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.20 36.01 0.37 -0.75 16 2 C -0.12 -1.94 6.21 -104.16 -0.65 -2.59 16 3 C -0.20 -2.67 10.76 -39.98 -0.43 -3.10 16 4 C 0.00 -0.04 11.38 -16.91 -0.19 -0.23 16 5 N -0.42 -6.22 3.16 -120.23 -0.38 -6.60 16 6 C 0.07 0.86 10.98 59.85 0.66 1.52 16 7 C -0.02 -0.41 5.82 -81.98 -0.48 -0.89 16 8 C 0.60 12.20 6.60 -12.86 -0.08 12.11 16 9 O -0.54 -12.69 17.41 5.19 0.09 -12.60 16 10 N -0.60 -12.12 3.33 -172.05 -0.57 -12.69 16 11 C 0.11 2.00 6.47 -3.06 -0.02 1.98 16 12 C -0.14 -2.94 5.64 -24.90 -0.14 -3.08 16 13 C 0.25 5.90 0.89 -89.63 -0.08 5.82 16 14 O -0.59 -14.53 13.18 -35.23 -0.46 -14.99 16 15 C -0.53 -13.61 8.25 -34.44 -0.28 -13.90 16 16 H 0.07 1.70 7.77 -52.49 -0.41 1.29 16 17 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 18 N -0.90 -22.62 10.79 55.43 0.60 -22.02 16 19 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 C 0.12 2.65 6.06 -2.53 -0.02 2.63 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.87 7.96 -51.93 -0.41 0.46 16 27 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.16 1.42 8.06 -52.48 -0.42 1.00 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.24 7.68 -51.93 -0.40 0.84 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.48 8.03 -51.93 -0.42 1.06 16 35 H 0.08 1.84 7.85 -51.92 -0.41 1.43 16 36 H 0.39 9.70 6.93 45.56 0.32 10.01 16 37 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 38 H 0.07 1.67 8.09 -51.93 -0.42 1.25 16 39 H 0.07 1.59 8.01 -51.93 -0.42 1.18 16 LS Contribution 328.87 15.07 4.96 4.96 Total: -1.00 -29.23 328.87 -7.32 -36.54 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -5.08 Total: 11.36 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.44 Total: 1.26 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: -0.35 Total: -41.31 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.37 Total: -27.59 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.23 -7.32 -36.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850745.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.583 kcal (2) G-P(sol) polarization free energy of solvation -29.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds