Wall clock time and date at job start Tue Mar 31 2020 00:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39835 * 126.45327 * 2 1 4 4 C 1.35452 * 107.86111 * 179.97438 * 3 2 1 5 5 N 1.35531 * 108.87210 * 359.72755 * 4 3 2 6 6 C 1.46510 * 125.68029 * 180.30624 * 5 4 3 7 7 C 1.37647 * 108.64403 * 0.44094 * 5 4 3 8 8 C 1.46678 * 126.23352 * 179.82798 * 7 5 4 9 9 O 1.21696 * 120.00246 * 99.25874 * 8 7 5 10 10 N 1.34772 * 120.00250 * 279.25781 * 8 7 5 11 11 C 1.47027 * 125.64770 * 354.79928 * 10 8 7 12 12 C 1.54322 * 107.27073 * 178.97464 * 11 10 8 13 13 C 1.55152 * 102.94638 * 337.81013 * 12 11 10 14 14 O 1.42909 * 111.00098 * 277.42732 * 13 12 11 15 15 C 1.50697 * 111.03857 * 153.59110 * 13 12 11 16 16 H 1.08001 * 119.99604 * 247.78392 * 15 13 12 17 17 C 1.37878 * 120.00285 * 67.78645 * 15 13 12 18 18 N 1.31518 * 119.99615 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 120.00145 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47215 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47563 * 119.99915 * 19 17 15 22 22 H 1.48503 * 109.46868 * 239.99674 * 19 17 15 23 23 C 1.47428 * 125.65145 * 174.83916 * 10 8 7 24 24 H 1.08998 * 109.46984 * 270.03924 * 1 2 3 25 25 H 1.09001 * 109.47293 * 30.04767 * 1 2 3 26 26 H 1.09004 * 109.47129 * 150.04387 * 1 2 3 27 27 H 1.08001 * 126.07106 * 359.97438 * 3 2 1 28 28 H 1.08004 * 125.56701 * 180.02562 * 4 3 2 29 29 H 1.08998 * 109.46693 * 275.12064 * 6 5 4 30 30 H 1.09001 * 109.46769 * 35.11110 * 6 5 4 31 31 H 1.08994 * 109.47156 * 155.11451 * 6 5 4 32 32 H 1.08999 * 109.88224 * 298.39478 * 11 10 8 33 33 H 1.08999 * 109.88213 * 59.55928 * 11 10 8 34 34 H 1.09000 * 110.71793 * 96.17733 * 12 11 10 35 35 H 1.09010 * 110.72119 * 219.44265 * 12 11 10 36 36 H 0.96697 * 113.99821 * 292.19225 * 14 13 12 37 37 H 0.97006 * 119.99459 * 180.02562 * 18 17 15 38 38 H 1.08996 * 110.36779 * 322.93671 * 23 10 8 39 39 H 1.09003 * 110.36574 * 85.25994 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1248 0.0000 4 6 3.6217 0.6929 0.0006 5 7 3.6283 -0.6624 0.0070 6 6 4.8226 -1.5111 0.0161 7 6 2.3263 -1.1088 0.0006 8 6 1.8899 -2.5092 0.0009 9 8 1.5412 -3.0377 1.0401 10 7 1.8751 -3.2106 -1.1498 11 6 2.1649 -2.6707 -2.4863 12 6 2.0525 -3.8400 -3.4871 13 6 2.2608 -5.0877 -2.5888 14 8 3.6513 -5.3364 -2.3721 15 6 1.5840 -6.2980 -3.1786 16 1 0.7300 -6.7347 -2.6822 17 6 2.0550 -6.8481 -4.3519 18 7 3.0947 -6.3160 -4.9566 19 14 1.2157 -8.3479 -5.0834 20 1 0.0780 -8.7500 -4.2176 21 1 0.7130 -8.0207 -6.4418 22 1 2.1891 -9.4660 -5.1718 23 6 1.5648 -4.6462 -1.2771 24 1 -0.3633 0.0007 1.0277 25 1 -0.3634 0.8896 -0.5146 26 1 -0.3633 -0.8904 -0.5132 27 1 2.0136 2.1549 -0.0004 28 1 4.4973 1.3253 0.0011 29 1 5.1761 -1.6516 -1.0054 30 1 5.6032 -1.0334 0.6082 31 1 4.5769 -2.4793 0.4521 32 1 1.4406 -1.8961 -2.7382 33 1 3.1740 -2.2590 -2.5090 34 1 1.0657 -3.8581 -3.9497 35 1 2.8336 -3.7755 -4.2449 36 1 4.1291 -5.6155 -3.1651 37 1 3.4259 -6.7028 -5.7823 38 1 1.9689 -5.1984 -0.4287 39 1 0.4876 -4.7965 -1.3503 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850745.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:32 Heat of formation + Delta-G solvation = -53.912112 kcal Electronic energy + Delta-G solvation = -22459.073169 eV Core-core repulsion = 19173.691111 eV Total energy + Delta-G solvation = -3285.382057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.37470 -40.65475 -38.88334 -36.16100 -34.63316 -34.15970 -32.01015 -30.99524 -30.13908 -29.11065 -27.06194 -26.07439 -24.37586 -22.46411 -21.51536 -21.04056 -19.73121 -19.13710 -18.47224 -17.38711 -16.98449 -16.69951 -16.36866 -16.08087 -15.81140 -15.34668 -14.86009 -14.47425 -14.25143 -14.12468 -13.97461 -13.69336 -13.67221 -13.61670 -13.24769 -13.11432 -12.90343 -12.84742 -12.66328 -12.53385 -12.44617 -12.26673 -11.94540 -11.39748 -11.24032 -10.66850 -10.19832 -9.73344 -9.45604 -9.03600 -8.27699 -6.42064 0.87661 1.23261 1.40891 1.45633 1.55481 1.86650 1.98403 2.25677 2.39819 2.97228 3.48421 3.76839 3.85308 3.96262 4.20001 4.22899 4.25969 4.30334 4.37353 4.39916 4.51000 4.54323 4.62472 4.80012 4.82145 4.86721 5.08257 5.09760 5.14980 5.18308 5.39386 5.45016 5.45571 5.74245 5.95209 6.00948 6.05608 6.39702 6.44425 6.61612 6.92911 7.29260 7.41714 8.79133 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030002 B = 0.004817 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.058341 B = 5810.970865 C = 6051.695635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.126 4.126 3 C -0.211 4.211 4 C 0.019 3.981 5 N -0.427 5.427 6 C 0.068 3.932 7 C -0.073 4.073 8 C 0.600 3.400 9 O -0.584 6.584 10 N -0.596 5.596 11 C 0.118 3.882 12 C -0.127 4.127 13 C 0.240 3.760 14 O -0.593 6.593 15 C -0.561 4.561 16 H 0.058 0.942 17 C 0.038 3.962 18 N -0.910 5.910 19 Si 0.962 3.038 20 H -0.273 1.273 21 H -0.275 1.275 22 H -0.280 1.280 23 C 0.123 3.877 24 H 0.065 0.935 25 H 0.092 0.908 26 H 0.039 0.961 27 H 0.167 0.833 28 H 0.208 0.792 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.382 0.618 37 H 0.273 0.727 38 H 0.050 0.950 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.284 14.342 3.248 14.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C -0.235 4.235 4 C -0.114 4.114 5 N -0.102 5.102 6 C -0.073 4.073 7 C -0.185 4.185 8 C 0.389 3.611 9 O -0.464 6.464 10 N -0.327 5.327 11 C -0.004 4.004 12 C -0.166 4.166 13 C 0.199 3.801 14 O -0.404 6.404 15 C -0.599 4.599 16 H 0.076 0.924 17 C -0.163 4.163 18 N -0.550 5.550 19 Si 0.788 3.212 20 H -0.198 1.198 21 H -0.200 1.200 22 H -0.206 1.206 23 C 0.001 3.999 24 H 0.084 0.916 25 H 0.111 0.889 26 H 0.058 0.942 27 H 0.185 0.815 28 H 0.225 0.775 29 H 0.104 0.896 30 H 0.142 0.858 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.234 0.766 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.380 13.991 4.302 14.830 hybrid contribution -0.199 -1.461 -0.984 1.773 sum 2.181 12.530 3.318 13.144 Atomic orbital electron populations 1.20211 0.89396 1.02326 1.01963 1.20113 0.96033 0.91380 1.05946 1.20974 0.91586 0.98811 1.12082 1.22567 1.00693 0.81609 1.06567 1.44031 1.04506 1.07348 1.54326 1.22249 0.85860 0.94506 1.04673 1.19807 0.85911 0.92043 1.20770 1.17203 0.77470 0.84664 0.81780 1.90754 1.51225 1.71549 1.32897 1.48650 1.66277 1.10476 1.07330 1.22032 1.00365 0.96990 0.80979 1.23011 1.02035 0.94259 0.97296 1.19707 0.79737 0.91991 0.88616 1.86068 1.23079 1.90554 1.40673 1.21718 1.15555 1.14036 1.08616 0.92408 1.25598 0.95246 0.99310 0.96177 1.69623 1.24696 1.41558 1.19076 0.85446 0.78493 0.79119 0.78179 1.19802 1.20025 1.20573 1.22262 0.99240 0.79717 0.98694 0.91648 0.88931 0.94217 0.81509 0.77489 0.89632 0.85802 0.92639 0.90603 0.92014 0.91475 0.90737 0.76600 0.91723 0.93162 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.16 10.20 71.24 0.73 -1.43 16 2 C -0.13 -3.75 6.21 -19.56 -0.12 -3.87 16 3 C -0.21 -4.80 10.76 22.01 0.24 -4.56 16 4 C 0.02 0.39 11.38 83.48 0.95 1.34 16 5 N -0.43 -11.66 3.16 -534.31 -1.69 -13.35 16 6 C 0.07 1.57 10.98 127.77 1.40 2.98 16 7 C -0.07 -2.49 5.82 40.35 0.23 -2.25 16 8 C 0.60 25.09 6.60 86.45 0.57 25.66 16 9 O -0.58 -28.50 17.41 -4.34 -0.08 -28.57 16 10 N -0.60 -24.75 3.33 -816.48 -2.72 -27.47 16 11 C 0.12 4.40 6.47 86.73 0.56 4.96 16 12 C -0.13 -5.42 5.64 31.78 0.18 -5.24 16 13 C 0.24 11.58 0.89 -10.15 -0.01 11.58 16 14 O -0.59 -30.15 13.18 -148.98 -1.96 -32.11 16 15 C -0.56 -29.09 8.25 25.60 0.21 -28.88 16 16 H 0.06 3.02 7.77 -2.91 -0.02 3.00 16 17 C 0.04 1.89 5.30 84.65 0.45 2.34 16 18 N -0.91 -45.70 10.79 21.45 0.23 -45.47 16 19 Si 0.96 40.52 29.54 68.60 2.03 42.55 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 23 C 0.12 5.69 6.06 86.85 0.53 6.22 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.04 1.17 7.96 -2.39 -0.02 1.15 16 27 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 28 H 0.21 2.36 8.06 -2.91 -0.02 2.33 16 29 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.05 1.62 7.68 -2.39 -0.02 1.60 16 32 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.07 2.86 8.03 -2.39 -0.02 2.84 16 35 H 0.07 3.29 7.85 -2.38 -0.02 3.27 16 36 H 0.38 19.60 6.93 -74.06 -0.51 19.08 16 37 H 0.27 12.99 8.31 -92.70 -0.77 12.22 16 38 H 0.05 2.49 8.09 -2.39 -0.02 2.47 16 39 H 0.07 3.38 8.01 -2.39 -0.02 3.36 16 Total: -1.00 -64.26 328.87 2.27 -61.99 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: 0.54 Total: 33.59 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.92 Total: 8.84 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -4.17 Total: -86.28 kcal Atomic # 8 Polarization: -58.65 SS G_CDS: -2.04 Total: -60.68 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -64.26 2.27 -61.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850745.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.081 kcal (2) G-P(sol) polarization free energy of solvation -64.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds