Wall clock time and date at job start Tue Mar 31 2020 00:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39833 * 126.45974 * 2 1 4 4 C 1.35447 * 107.86332 * 180.30142 * 3 2 1 5 5 N 1.35531 * 108.87492 * 359.74843 * 4 3 2 6 6 C 1.46494 * 125.67818 * 180.02562 * 5 4 3 7 7 C 1.37653 * 108.64212 * 359.97438 * 5 4 3 8 8 C 1.46680 * 126.23159 * 179.97438 * 7 5 4 9 9 O 1.21694 * 119.99819 * 99.33551 * 8 7 5 10 10 N 1.34777 * 120.00376 * 279.33599 * 8 7 5 11 11 C 1.47423 * 125.64502 * 354.81005 * 10 8 7 12 12 C 1.54912 * 104.83014 * 155.83681 * 11 10 8 13 13 C 1.55159 * 101.58037 * 37.00859 * 12 11 10 14 14 O 1.42905 * 110.71594 * 82.86281 * 13 12 11 15 15 C 1.50699 * 110.71892 * 205.95600 * 13 12 11 16 16 H 1.08004 * 119.99727 * 116.16359 * 15 13 12 17 17 C 1.37875 * 120.00269 * 296.16102 * 15 13 12 18 18 N 1.31520 * 119.99958 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00083 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47079 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46866 * 119.99785 * 19 17 15 22 22 H 1.48500 * 109.47036 * 239.99724 * 19 17 15 23 23 C 1.47017 * 125.65004 * 174.77101 * 10 8 7 24 24 H 1.09003 * 109.46760 * 270.13549 * 1 2 3 25 25 H 1.08998 * 109.47280 * 30.13226 * 1 2 3 26 26 H 1.08997 * 109.47693 * 150.13597 * 1 2 3 27 27 H 1.08004 * 126.06769 * 0.03063 * 3 2 1 28 28 H 1.08004 * 125.55956 * 179.77649 * 4 3 2 29 29 H 1.09003 * 109.47111 * 274.90346 * 6 5 4 30 30 H 1.08995 * 109.47604 * 34.90418 * 6 5 4 31 31 H 1.09005 * 109.47277 * 154.91024 * 6 5 4 32 32 H 1.09003 * 110.37009 * 36.99863 * 11 10 8 33 33 H 1.08996 * 110.37054 * 274.67235 * 11 10 8 34 34 H 1.08999 * 111.00330 * 278.93657 * 12 11 10 35 35 H 1.09000 * 111.03873 * 155.09982 * 12 11 10 36 36 H 0.96694 * 113.99819 * 61.45523 * 14 13 12 37 37 H 0.96994 * 119.99720 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.88312 * 61.67788 * 23 10 8 39 39 H 1.09004 * 109.88249 * 300.51174 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1246 0.0000 4 6 3.6217 0.6927 -0.0068 5 7 3.6283 -0.6626 -0.0054 6 6 4.8224 -1.5112 -0.0107 7 6 2.3262 -1.1089 0.0030 8 6 1.8898 -2.5093 0.0065 9 8 1.5520 -3.0387 1.0489 10 7 1.8628 -3.2098 -1.1446 11 6 2.1396 -2.6672 -2.4871 12 6 2.5906 -3.8904 -3.3239 13 6 1.6704 -5.0072 -2.7640 14 8 0.3890 -4.9702 -3.3954 15 6 2.3091 -6.3611 -2.9372 16 1 2.5756 -6.9474 -2.0702 17 6 2.5533 -6.8514 -4.2025 18 7 2.2283 -6.1377 -5.2583 19 14 3.3443 -8.5300 -4.4172 20 1 3.6106 -9.1259 -3.0834 21 1 2.4285 -9.4146 -5.1813 22 1 4.6232 -8.3834 -5.1575 23 6 1.5534 -4.6416 -1.2693 24 1 -0.3633 0.0024 1.0277 25 1 -0.3634 0.8888 -0.5159 26 1 -0.3634 -0.8911 -0.5117 27 1 2.0137 2.1549 0.0005 28 1 4.4972 1.3252 -0.0119 29 1 5.1642 -1.6511 -1.0363 30 1 5.6099 -1.0341 0.5727 31 1 4.5818 -2.4799 0.4273 32 1 2.9369 -1.9254 -2.4396 33 1 1.2371 -2.2286 -2.9126 34 1 3.6403 -4.1219 -3.1430 35 1 2.4060 -3.7277 -4.3857 36 1 0.4169 -5.1169 -4.3508 37 1 2.3997 -6.4828 -6.1484 38 1 0.5392 -4.8335 -0.9191 39 1 2.2656 -5.2269 -0.6876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592850746.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:37 Heat of formation + Delta-G solvation = -34.201062 kcal Electronic energy + Delta-G solvation = -22428.345210 eV Core-core repulsion = 19143.817888 eV Total energy + Delta-G solvation = -3284.527322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.25510 -39.07441 -37.17028 -34.34624 -33.61066 -32.23521 -30.49220 -29.60531 -28.55571 -27.81681 -25.43610 -24.87455 -22.79880 -21.14351 -20.06200 -19.59682 -18.27685 -17.38888 -17.01283 -16.00378 -15.32918 -15.09015 -14.94879 -14.71779 -14.22832 -13.76528 -13.35281 -13.19183 -13.11632 -12.99189 -12.69186 -12.21882 -12.07287 -11.91028 -11.85149 -11.66900 -11.43968 -11.38302 -11.35095 -10.94073 -10.67654 -10.49493 -10.17506 -9.69186 -9.43196 -8.71998 -8.45114 -8.27869 -8.09590 -7.90948 -6.34064 -4.41402 2.04886 2.53140 2.96399 3.15096 3.21382 3.24757 3.29279 3.62905 4.22601 4.73967 4.84106 4.94870 5.07808 5.12421 5.35205 5.40898 5.46658 5.53406 5.70173 5.80022 5.87677 5.91290 5.98674 6.14272 6.17758 6.18631 6.40173 6.47759 6.61621 6.83295 6.89165 7.00068 7.16589 7.21938 7.28150 7.34363 7.68408 7.95788 7.99539 8.50058 8.61484 9.26428 9.37266 10.73946 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027591 B = 0.004900 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.587681 B = 5712.647478 C = 5946.508741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.120 4.120 3 C -0.201 4.201 4 C -0.003 4.003 5 N -0.424 5.424 6 C 0.069 3.931 7 C -0.024 4.024 8 C 0.596 3.404 9 O -0.541 6.541 10 N -0.597 5.597 11 C 0.101 3.899 12 C -0.135 4.135 13 C 0.248 3.752 14 O -0.585 6.585 15 C -0.534 4.534 16 H 0.065 0.935 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.903 3.097 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.282 1.282 23 C 0.121 3.879 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.138 0.862 28 H 0.164 0.836 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.384 0.616 37 H 0.268 0.732 38 H 0.064 0.936 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.169 12.018 4.545 13.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C -0.225 4.225 4 C -0.135 4.135 5 N -0.099 5.099 6 C -0.072 4.072 7 C -0.138 4.138 8 C 0.382 3.618 9 O -0.419 6.419 10 N -0.329 5.329 11 C -0.022 4.022 12 C -0.174 4.174 13 C 0.208 3.792 14 O -0.394 6.394 15 C -0.573 4.573 16 H 0.083 0.917 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.208 1.208 23 C 0.000 4.000 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.156 0.844 28 H 0.182 0.818 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.235 0.765 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.110 11.609 5.580 13.520 hybrid contribution 0.839 -0.880 -0.898 1.512 sum 4.950 10.729 4.682 12.709 Atomic orbital electron populations 1.20168 0.89922 1.02078 1.01772 1.19723 0.95285 0.90940 1.06815 1.20608 0.91726 0.98240 1.11963 1.21776 0.99249 0.82463 1.10038 1.43808 1.05075 1.06239 1.54803 1.22121 0.85823 0.95545 1.03755 1.20117 0.83843 0.93637 1.16179 1.16750 0.78797 0.83448 0.82808 1.90803 1.49520 1.70084 1.31456 1.48661 1.66530 1.11303 1.06433 1.22461 0.99648 0.97760 0.82299 1.23322 1.00538 0.93741 0.99824 1.19450 0.81306 0.92685 0.85755 1.86128 1.30984 1.95161 1.27128 1.21548 1.40355 1.02374 0.92982 0.91687 1.24980 0.94513 0.97827 0.95633 1.69654 1.47855 1.37693 0.98383 0.86358 0.78859 0.83361 0.78392 1.19581 1.20689 1.20847 1.22132 1.00577 0.78420 0.98870 0.91744 0.91661 0.92183 0.84375 0.81849 0.90234 0.89596 0.89703 0.92529 0.91721 0.91595 0.89397 0.76515 0.92182 0.91745 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.20 36.01 0.37 -0.80 16 2 C -0.12 -1.89 6.21 -104.16 -0.65 -2.53 16 3 C -0.20 -2.62 10.76 -39.98 -0.43 -3.05 16 4 C 0.00 -0.03 11.38 -16.91 -0.19 -0.22 16 5 N -0.42 -5.98 3.16 -120.24 -0.38 -6.36 16 6 C 0.07 0.78 10.98 59.84 0.66 1.43 16 7 C -0.02 -0.42 5.48 -81.98 -0.45 -0.87 16 8 C 0.60 12.01 6.60 -12.85 -0.08 11.93 16 9 O -0.54 -12.54 17.44 5.19 0.09 -12.45 16 10 N -0.60 -12.08 3.33 -172.06 -0.57 -12.66 16 11 C 0.10 1.89 6.72 -2.53 -0.02 1.88 16 12 C -0.14 -2.87 5.57 -24.58 -0.14 -3.01 16 13 C 0.25 5.89 0.85 -89.94 -0.08 5.82 16 14 O -0.58 -14.58 13.06 -35.23 -0.46 -15.04 16 15 C -0.53 -13.68 8.22 -34.44 -0.28 -13.97 16 16 H 0.06 1.67 7.56 -52.48 -0.40 1.28 16 17 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 18 N -0.90 -22.58 10.69 55.43 0.59 -21.99 16 19 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 C 0.12 2.72 6.23 -3.07 -0.02 2.70 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.94 7.96 -51.93 -0.41 0.52 16 27 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 28 H 0.16 1.36 8.06 -52.48 -0.42 0.93 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.09 7.68 -51.93 -0.40 0.69 16 32 H 0.06 0.96 7.61 -51.93 -0.40 0.56 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 35 H 0.09 1.94 7.64 -51.93 -0.40 1.54 16 36 H 0.38 9.56 7.28 45.56 0.33 9.89 16 37 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 38 H 0.06 1.51 8.07 -51.93 -0.42 1.09 16 39 H 0.07 1.63 7.66 -51.93 -0.40 1.23 16 LS Contribution 327.63 15.07 4.94 4.94 Total: -1.00 -29.45 327.63 -7.22 -36.66 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -5.00 Total: 10.99 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -1.41 Total: 1.05 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: -0.36 Total: -41.00 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.37 Total: -27.49 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.45 -7.22 -36.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850746.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.464 kcal (2) G-P(sol) polarization free energy of solvation -29.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds