Wall clock time and date at job start Tue Mar 31 2020 00:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38061 * 119.57160 * 2 1 4 4 C 1.38843 * 119.33001 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.75213 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.47050 * 89.99659 * 5 4 3 7 7 C 1.38342 * 118.50106 * 359.74829 * 4 3 2 8 8 C 1.39094 * 119.09938 * 0.51754 * 7 4 3 9 9 N 1.39008 * 119.70530 * 179.75122 * 8 7 4 10 10 C 1.48561 * 111.00130 * 299.84716 * 9 8 7 11 11 C 1.54382 * 104.59649 * 200.95875 * 10 9 8 12 12 C 1.54258 * 105.05673 * 23.85480 * 11 10 9 13 13 O 1.42899 * 110.32129 * 118.99770 * 12 11 10 14 14 C 1.50702 * 110.32054 * 241.10248 * 12 11 10 15 15 H 1.08002 * 120.00299 * 117.17876 * 14 12 11 16 16 C 1.37884 * 119.99942 * 296.89434 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.48820 * 110.97259 * 184.42773 * 9 8 7 23 23 N 1.31944 * 119.57237 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47215 * 269.97573 * 1 2 3 25 25 H 1.08999 * 109.47163 * 29.98074 * 1 2 3 26 26 H 1.09004 * 109.47166 * 149.98297 * 1 2 3 27 27 H 1.08005 * 120.33872 * 0.02562 * 3 2 1 28 28 H 1.08993 * 109.47507 * 210.00236 * 5 4 3 29 29 H 1.09008 * 109.46707 * 329.99988 * 5 4 3 30 30 H 0.96693 * 113.99960 * 180.02562 * 6 5 4 31 31 H 1.08005 * 120.44961 * 180.26341 * 7 4 3 32 32 H 1.09005 * 110.40954 * 82.18137 * 10 9 8 33 33 H 1.08999 * 110.41082 * 319.74262 * 10 9 8 34 34 H 1.09001 * 110.32087 * 264.95618 * 11 10 9 35 35 H 1.09000 * 110.32204 * 142.75056 * 11 10 9 36 36 H 0.96698 * 113.99998 * 62.83002 * 13 12 11 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 38 38 H 1.09003 * 110.45117 * 40.32839 * 22 9 8 39 39 H 1.09000 * 110.49939 * 277.80205 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2008 0.0000 4 6 3.5768 1.1949 -0.0005 5 6 4.3528 2.4867 0.0000 6 8 4.5985 2.8942 1.3475 7 6 4.2318 -0.0236 0.0043 8 6 3.4816 -1.1949 -0.0015 9 7 4.1268 -2.4262 -0.0020 10 6 4.9900 -2.5744 -1.2020 11 6 5.1889 -4.0980 -1.3522 12 6 3.9781 -4.7327 -0.6376 13 8 3.2090 -5.5086 -1.5587 14 6 4.4398 -5.5917 0.5113 15 1 4.1552 -5.3400 1.5223 16 6 5.2207 -6.7025 0.2713 17 7 5.5673 -7.0090 -0.9598 18 14 5.7865 -7.7716 1.6947 19 1 5.2652 -7.2156 2.9692 20 1 5.2729 -9.1529 1.5110 21 1 7.2708 -7.7967 1.7355 22 6 3.1473 -3.5407 -0.1158 23 7 2.1582 -1.1476 -0.0005 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3634 -0.8899 -0.5141 27 1 1.6469 2.1353 0.0004 28 1 5.3025 2.3403 -0.5143 29 1 3.7767 3.2568 -0.5131 30 1 5.0946 3.7206 1.4242 31 1 5.3110 -0.0649 0.0083 32 1 5.9484 -2.0796 -1.0443 33 1 4.4913 -2.1675 -2.0816 34 1 6.1172 -4.4077 -0.8720 35 1 5.1955 -4.3768 -2.4060 36 1 3.6876 -6.2592 -1.9362 37 1 6.1169 -7.7903 -1.1286 38 1 2.3609 -3.2856 -0.8262 39 1 2.7191 -3.7737 0.8591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596285416.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:11 Heat of formation + Delta-G solvation = -51.106065 kcal Electronic energy + Delta-G solvation = -21885.917254 eV Core-core repulsion = 18600.656877 eV Total energy + Delta-G solvation = -3285.260378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.50091 -38.21863 -36.97829 -35.02136 -33.09887 -32.07954 -31.90176 -28.92104 -28.31733 -26.97038 -26.58429 -24.59082 -22.49187 -21.08062 -20.30238 -19.23754 -17.67964 -17.05221 -16.67137 -16.43228 -15.67744 -14.93683 -14.76158 -14.41630 -14.23482 -14.02462 -13.76600 -13.31237 -13.10103 -12.53605 -12.40006 -12.24444 -11.92029 -11.84419 -11.77283 -11.45693 -11.19428 -11.09266 -10.73684 -10.47391 -10.36177 -10.31680 -10.00263 -9.58801 -9.31021 -9.12523 -9.00040 -8.55544 -8.12569 -7.67818 -6.16277 -4.21635 1.33842 1.36647 3.26314 3.34777 3.41087 3.74820 4.04663 4.33475 4.36996 4.55831 4.76465 4.97709 5.06190 5.14223 5.26454 5.34974 5.36974 5.58476 5.64724 5.70848 5.76649 5.79803 5.91235 6.07690 6.12252 6.19943 6.35228 6.43564 6.56267 6.80446 6.84708 6.95854 7.10566 7.36683 7.44875 7.54628 7.73207 7.86387 8.21670 8.34144 8.81679 9.44212 9.54436 10.91358 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023843 B = 0.004536 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.060305 B = 6170.780705 C = 6591.511203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.150 3.850 3 C -0.195 4.195 4 C -0.032 4.032 5 C 0.120 3.880 6 O -0.564 6.564 7 C -0.174 4.174 8 C 0.321 3.679 9 N -0.447 5.447 10 C 0.044 3.956 11 C -0.123 4.123 12 C 0.246 3.754 13 O -0.592 6.592 14 C -0.519 4.519 15 H 0.063 0.937 16 C 0.066 3.934 17 N -0.901 5.901 18 Si 0.900 3.100 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.069 3.931 23 N -0.510 5.510 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.128 0.872 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.380 0.620 31 H 0.134 0.866 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.384 0.616 37 H 0.265 0.735 38 H 0.058 0.942 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.713 17.569 -1.383 17.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.011 3.989 3 C -0.216 4.216 4 C -0.040 4.040 5 C 0.043 3.957 6 O -0.370 6.370 7 C -0.197 4.197 8 C 0.088 3.912 9 N -0.165 5.165 10 C -0.081 4.081 11 C -0.161 4.161 12 C 0.205 3.795 13 O -0.401 6.401 14 C -0.558 4.558 15 H 0.082 0.918 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.728 3.272 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.058 4.058 23 N -0.226 5.226 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.146 0.854 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.227 0.773 31 H 0.152 0.848 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.235 0.765 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.510 16.449 -0.724 16.835 hybrid contribution 1.345 0.343 -0.052 1.389 sum -2.164 16.792 -0.776 16.949 Atomic orbital electron populations 1.20698 0.89025 1.03224 1.02984 1.21064 0.96672 0.87795 0.93383 1.21555 0.93806 0.98945 1.07340 1.19748 0.93618 0.93953 0.96714 1.20928 0.97951 0.92859 0.83984 1.86595 1.78848 1.45495 1.26021 1.21406 1.01028 0.91086 1.06211 1.20253 0.87938 0.91575 0.91389 1.62409 1.17841 0.99682 1.36519 1.23237 0.95919 1.00454 0.88486 1.22944 1.02949 0.89911 1.00347 1.19318 0.85413 0.87560 0.87171 1.86092 1.45197 1.45946 1.62835 1.21718 1.30910 1.09517 0.93615 0.91841 1.25006 0.95127 0.97323 0.96043 1.69665 1.38103 1.27513 1.18950 0.86405 0.78222 0.80053 0.82541 1.19655 1.20943 1.20968 1.22926 0.92779 0.88476 1.01583 1.67573 1.08944 1.29540 1.16540 0.90489 0.90985 0.90370 0.85415 0.92364 0.92483 0.77318 0.84840 0.90729 0.94154 0.90237 0.92323 0.76548 0.92460 0.92389 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 10.17 36.01 0.37 -0.81 16 2 C 0.15 2.30 6.78 -82.61 -0.56 1.75 16 3 C -0.20 -2.65 9.44 -39.42 -0.37 -3.02 16 4 C -0.03 -0.45 5.54 -104.36 -0.58 -1.03 16 5 C 0.12 1.22 7.22 36.01 0.26 1.48 16 6 O -0.56 -6.04 13.64 -35.23 -0.48 -6.52 16 7 C -0.17 -2.85 9.11 -39.23 -0.36 -3.21 16 8 C 0.32 6.20 6.23 -155.01 -0.97 5.24 16 9 N -0.45 -9.54 5.41 -168.57 -0.91 -10.45 16 10 C 0.04 0.88 5.90 -2.18 -0.01 0.87 16 11 C -0.12 -2.85 5.61 -25.35 -0.14 -2.99 16 12 C 0.25 6.27 1.05 -90.39 -0.10 6.17 16 13 O -0.59 -15.73 12.94 -35.23 -0.46 -16.19 16 14 C -0.52 -14.29 8.07 -34.44 -0.28 -14.56 16 15 H 0.06 1.78 7.54 -52.49 -0.40 1.39 16 16 C 0.07 1.77 5.04 -17.82 -0.09 1.68 16 17 N -0.90 -24.20 10.83 55.43 0.60 -23.60 16 18 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.07 1.62 5.15 -2.04 -0.01 1.61 16 23 N -0.51 -9.68 8.40 -8.67 -0.07 -9.76 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 28 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 29 H 0.06 0.44 8.10 -51.92 -0.42 0.02 16 30 H 0.38 1.95 9.12 45.56 0.42 2.37 16 31 H 0.13 2.01 7.88 -52.48 -0.41 1.60 16 32 H 0.07 1.30 8.01 -51.93 -0.42 0.88 16 33 H 0.04 0.76 7.97 -51.93 -0.41 0.35 16 34 H 0.08 1.98 7.34 -51.93 -0.38 1.60 16 35 H 0.06 1.35 7.98 -51.93 -0.41 0.93 16 36 H 0.38 10.23 7.17 45.56 0.33 10.55 16 37 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 38 H 0.06 1.38 7.20 -51.93 -0.37 1.01 16 39 H 0.08 1.99 7.68 -51.93 -0.40 1.59 16 LS Contribution 322.23 15.07 4.86 4.86 Total: -1.00 -31.46 322.23 -8.45 -39.91 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -4.13 Total: 12.46 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -2.84 Total: -6.85 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: -0.39 Total: -43.80 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.94 Total: -22.71 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.46 -8.45 -39.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596285416.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.197 kcal (2) G-P(sol) polarization free energy of solvation -31.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds