Wall clock time and date at job start Tue Mar 31 2020 00:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38061 * 119.57160 * 2 1 4 4 C 1.38843 * 119.33001 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.75213 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.47050 * 89.99659 * 5 4 3 7 7 C 1.38342 * 118.50106 * 359.74829 * 4 3 2 8 8 C 1.39094 * 119.09938 * 0.51754 * 7 4 3 9 9 N 1.39008 * 119.70530 * 179.75122 * 8 7 4 10 10 C 1.48561 * 111.00130 * 299.84716 * 9 8 7 11 11 C 1.54382 * 104.59649 * 200.95875 * 10 9 8 12 12 C 1.54258 * 105.05673 * 23.85480 * 11 10 9 13 13 O 1.42899 * 110.32129 * 118.99770 * 12 11 10 14 14 C 1.50702 * 110.32054 * 241.10248 * 12 11 10 15 15 H 1.08002 * 120.00299 * 117.17876 * 14 12 11 16 16 C 1.37884 * 119.99942 * 296.89434 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.48820 * 110.97259 * 184.42773 * 9 8 7 23 23 N 1.31944 * 119.57237 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47215 * 269.97573 * 1 2 3 25 25 H 1.08999 * 109.47163 * 29.98074 * 1 2 3 26 26 H 1.09004 * 109.47166 * 149.98297 * 1 2 3 27 27 H 1.08005 * 120.33872 * 0.02562 * 3 2 1 28 28 H 1.08993 * 109.47507 * 210.00236 * 5 4 3 29 29 H 1.09008 * 109.46707 * 329.99988 * 5 4 3 30 30 H 0.96693 * 113.99960 * 180.02562 * 6 5 4 31 31 H 1.08005 * 120.44961 * 180.26341 * 7 4 3 32 32 H 1.09005 * 110.40954 * 82.18137 * 10 9 8 33 33 H 1.08999 * 110.41082 * 319.74262 * 10 9 8 34 34 H 1.09001 * 110.32087 * 264.95618 * 11 10 9 35 35 H 1.09000 * 110.32204 * 142.75056 * 11 10 9 36 36 H 0.96698 * 113.99998 * 62.83002 * 13 12 11 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 38 38 H 1.09003 * 110.45117 * 40.32839 * 22 9 8 39 39 H 1.09000 * 110.49939 * 277.80205 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2008 0.0000 4 6 3.5768 1.1949 -0.0005 5 6 4.3528 2.4867 0.0000 6 8 4.5985 2.8942 1.3475 7 6 4.2318 -0.0236 0.0043 8 6 3.4816 -1.1949 -0.0015 9 7 4.1268 -2.4262 -0.0020 10 6 4.9900 -2.5744 -1.2020 11 6 5.1889 -4.0980 -1.3522 12 6 3.9781 -4.7327 -0.6376 13 8 3.2090 -5.5086 -1.5587 14 6 4.4398 -5.5917 0.5113 15 1 4.1552 -5.3400 1.5223 16 6 5.2207 -6.7025 0.2713 17 7 5.5673 -7.0090 -0.9598 18 14 5.7865 -7.7716 1.6947 19 1 5.2652 -7.2156 2.9692 20 1 5.2729 -9.1529 1.5110 21 1 7.2708 -7.7967 1.7355 22 6 3.1473 -3.5407 -0.1158 23 7 2.1582 -1.1476 -0.0005 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3634 -0.8899 -0.5141 27 1 1.6469 2.1353 0.0004 28 1 5.3025 2.3403 -0.5143 29 1 3.7767 3.2568 -0.5131 30 1 5.0946 3.7206 1.4242 31 1 5.3110 -0.0649 0.0083 32 1 5.9484 -2.0796 -1.0443 33 1 4.4913 -2.1675 -2.0816 34 1 6.1172 -4.4077 -0.8720 35 1 5.1955 -4.3768 -2.4060 36 1 3.6876 -6.2592 -1.9362 37 1 6.1169 -7.7903 -1.1286 38 1 2.3609 -3.2856 -0.8262 39 1 2.7191 -3.7737 0.8591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596285416.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:10 Heat of formation + Delta-G solvation = -76.276828 kcal Electronic energy + Delta-G solvation = -21887.008741 eV Core-core repulsion = 18600.656877 eV Total energy + Delta-G solvation = -3286.351864 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.80989 -39.81746 -37.84692 -36.80487 -34.17849 -34.16159 -33.33609 -30.48123 -30.04438 -28.33550 -27.49666 -26.45942 -23.96693 -22.36186 -21.79486 -20.98991 -19.11401 -18.39602 -18.10776 -17.65475 -16.96935 -16.81287 -16.42469 -15.84293 -15.50786 -15.34221 -15.00009 -14.63426 -14.35849 -14.13976 -14.07669 -13.57795 -13.39374 -13.18055 -13.06591 -12.95134 -12.82069 -12.64208 -12.48892 -12.36902 -12.23363 -12.01873 -11.05040 -10.99196 -10.85171 -10.63371 -10.55943 -10.39019 -10.18228 -9.08599 -8.22469 -6.35563 0.14495 0.20837 1.38592 1.41676 1.53270 2.39467 2.51188 2.75776 3.04108 3.31154 3.50154 3.82735 3.94306 4.04041 4.06236 4.16749 4.19288 4.29279 4.31322 4.43112 4.54662 4.56473 4.63604 4.74610 4.78562 4.81941 4.93799 4.95401 5.13696 5.18940 5.24952 5.30517 5.56575 5.61112 5.66194 5.76739 6.13109 6.25621 6.68062 6.92422 7.08546 7.33297 7.43170 8.84031 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023843 B = 0.004536 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.060305 B = 6170.780705 C = 6591.511203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.130 3.870 3 C -0.182 4.182 4 C -0.034 4.034 5 C 0.123 3.877 6 O -0.588 6.588 7 C -0.181 4.181 8 C 0.286 3.714 9 N -0.459 5.459 10 C 0.055 3.945 11 C -0.112 4.112 12 C 0.231 3.769 13 O -0.601 6.601 14 C -0.547 4.547 15 H 0.046 0.954 16 C 0.031 3.969 17 N -0.912 5.912 18 Si 0.959 3.041 19 H -0.277 1.277 20 H -0.277 1.277 21 H -0.274 1.274 22 C 0.085 3.915 23 N -0.547 5.547 24 H 0.085 0.915 25 H 0.107 0.893 26 H 0.064 0.936 27 H 0.167 0.833 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.403 0.597 31 H 0.142 0.858 32 H 0.101 0.899 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.380 0.620 37 H 0.270 0.730 38 H 0.047 0.953 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.478 20.252 -1.299 20.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.008 4.008 3 C -0.202 4.202 4 C -0.043 4.043 5 C 0.046 3.954 6 O -0.398 6.398 7 C -0.203 4.203 8 C 0.055 3.945 9 N -0.177 5.177 10 C -0.071 4.071 11 C -0.151 4.151 12 C 0.191 3.809 13 O -0.410 6.410 14 C -0.585 4.585 15 H 0.064 0.936 16 C -0.169 4.169 17 N -0.553 5.553 18 Si 0.785 3.215 19 H -0.202 1.202 20 H -0.202 1.202 21 H -0.200 1.200 22 C -0.042 4.042 23 N -0.263 5.263 24 H 0.104 0.896 25 H 0.125 0.875 26 H 0.083 0.917 27 H 0.184 0.816 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.255 0.745 31 H 0.160 0.840 32 H 0.119 0.881 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.230 0.770 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.270 19.174 -0.645 19.462 hybrid contribution 1.193 -0.365 -0.080 1.251 sum -2.076 18.809 -0.725 18.937 Atomic orbital electron populations 1.20798 0.86666 1.04287 1.03850 1.21745 0.98375 0.87627 0.93059 1.22025 0.93976 0.99695 1.04526 1.20295 0.94290 0.94882 0.94794 1.20996 0.98705 0.91517 0.84219 1.86519 1.79590 1.47375 1.26322 1.21551 1.01416 0.91069 1.06296 1.20322 0.88664 0.91350 0.94194 1.62451 1.17648 1.00090 1.37479 1.23167 0.97187 0.97968 0.88749 1.22688 1.00749 0.92388 0.99304 1.19530 0.86589 0.87854 0.86901 1.86083 1.45766 1.46003 1.63098 1.21829 1.32227 1.10996 0.93412 0.93607 1.25631 0.94878 0.98059 0.98374 1.69724 1.37818 1.27728 1.20007 0.85492 0.78070 0.78452 0.79474 1.20238 1.20238 1.19987 1.22552 0.92888 0.89057 0.99681 1.67494 1.09218 1.31903 1.17671 0.89604 0.87484 0.91739 0.81560 0.90884 0.89351 0.74539 0.84036 0.88053 0.93404 0.92323 0.92760 0.77010 0.92010 0.93461 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.11 10.17 71.24 0.72 -1.38 16 2 C 0.13 3.83 6.78 42.50 0.29 4.12 16 3 C -0.18 -4.34 9.44 22.37 0.21 -4.13 16 4 C -0.03 -0.86 5.54 -19.69 -0.11 -0.97 16 5 C 0.12 1.97 7.22 71.24 0.51 2.48 16 6 O -0.59 -10.46 13.64 -148.98 -2.03 -12.49 16 7 C -0.18 -5.68 9.11 22.50 0.20 -5.48 16 8 C 0.29 11.10 6.23 133.04 0.83 11.93 16 9 N -0.46 -20.04 5.41 -687.22 -3.72 -23.76 16 10 C 0.05 2.17 5.90 86.45 0.51 2.68 16 11 C -0.11 -5.36 5.61 31.49 0.18 -5.18 16 12 C 0.23 12.26 1.05 -10.64 -0.01 12.25 16 13 O -0.60 -33.20 12.94 -148.98 -1.93 -35.13 16 14 C -0.55 -31.16 8.07 25.60 0.21 -30.95 16 15 H 0.05 2.70 7.54 -2.91 -0.02 2.68 16 16 C 0.03 1.67 5.04 84.66 0.43 2.09 16 17 N -0.91 -49.57 10.83 21.45 0.23 -49.34 16 18 Si 0.96 43.88 29.54 68.60 2.03 45.90 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 C 0.09 4.23 5.15 86.40 0.44 4.68 16 23 N -0.55 -20.96 8.40 -181.34 -1.52 -22.49 16 24 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.11 1.49 8.08 -2.39 -0.02 1.47 16 26 H 0.06 1.54 8.14 -2.38 -0.02 1.53 16 27 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 28 H 0.07 0.97 8.10 -2.39 -0.02 0.95 16 29 H 0.09 0.89 8.10 -2.38 -0.02 0.87 16 30 H 0.40 2.64 9.12 -74.06 -0.68 1.96 16 31 H 0.14 4.06 7.88 -2.91 -0.02 4.04 16 32 H 0.10 3.45 8.01 -2.38 -0.02 3.43 16 33 H 0.05 1.81 7.97 -2.39 -0.02 1.79 16 34 H 0.06 2.99 7.34 -2.39 -0.02 2.98 16 35 H 0.05 2.56 7.98 -2.39 -0.02 2.54 16 36 H 0.38 20.99 7.17 -74.06 -0.53 20.46 16 37 H 0.27 13.87 8.31 -92.70 -0.77 13.10 16 38 H 0.05 2.38 7.20 -2.39 -0.02 2.36 16 39 H 0.06 3.05 7.68 -2.39 -0.02 3.03 16 Total: -1.00 -70.21 322.23 -2.66 -72.87 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: -0.13 Total: 32.30 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 4.42 Total: -7.86 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -5.01 Total: -95.59 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -3.96 Total: -47.62 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -70.21 -2.66 -72.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596285416.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.406 kcal (2) G-P(sol) polarization free energy of solvation -70.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds