Wall clock time and date at job start Tue Mar 31 2020 01:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41384 * 126.57891 * 2 1 4 4 C 1.34519 * 106.83696 * 180.23800 * 3 2 1 5 5 O 1.34301 * 108.42316 * 359.77297 * 4 3 2 6 6 C 1.34310 * 109.47777 * 359.97438 * 5 4 3 7 7 C 1.50696 * 125.79105 * 179.97438 * 6 5 4 8 8 C 1.50693 * 109.47187 * 270.02615 * 7 6 5 9 9 O 1.21284 * 120.00168 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00000 * 180.02562 * 8 7 6 11 11 C 1.46961 * 120.59161 * 359.72277 * 10 8 7 12 12 C 1.53812 * 108.39988 * 124.75936 * 11 10 8 13 13 N 1.46963 * 108.58103 * 49.63469 * 12 11 10 14 14 C 1.36937 * 120.59781 * 124.62630 * 13 12 11 15 15 H 1.07995 * 119.99986 * 208.18828 * 14 13 12 16 16 C 1.38819 * 119.99607 * 28.17836 * 14 13 12 17 17 N 1.31613 * 120.00044 * 17.56364 * 16 14 13 18 18 Si 1.86797 * 119.99810 * 197.55806 * 16 14 13 19 19 H 1.48506 * 109.46934 * 60.00805 * 18 16 14 20 20 H 1.48497 * 109.47150 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47387 * 300.00545 * 18 16 14 22 22 C 1.46963 * 118.81124 * 304.64814 * 13 12 11 23 23 C 1.46963 * 120.59599 * 179.97438 * 10 8 7 24 24 H 1.09003 * 109.46698 * 270.15900 * 1 2 3 25 25 H 1.09002 * 109.47065 * 30.15581 * 1 2 3 26 26 H 1.08996 * 109.47564 * 150.15923 * 1 2 3 27 27 H 1.07991 * 126.58297 * 359.97438 * 3 2 1 28 28 H 1.08003 * 125.78918 * 179.75207 * 4 3 2 29 29 H 1.09003 * 109.46921 * 30.02667 * 7 6 5 30 30 H 1.09001 * 109.47142 * 150.02437 * 7 6 5 31 31 H 1.09008 * 109.60718 * 244.54201 * 11 10 8 32 32 H 1.08996 * 109.61469 * 5.04542 * 11 10 8 33 33 H 1.09003 * 109.74072 * 289.84533 * 12 11 10 34 34 H 1.09000 * 109.53554 * 169.30351 * 12 11 10 35 35 H 0.97001 * 120.00271 * 179.97438 * 17 16 14 36 36 H 1.08996 * 109.60958 * 295.48254 * 22 13 12 37 37 H 1.08998 * 109.75254 * 175.05298 * 22 13 12 38 38 H 1.09000 * 109.61042 * 354.95100 * 23 10 8 39 39 H 1.08996 * 109.60886 * 115.28559 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1354 0.0000 4 6 3.6157 0.6810 -0.0053 5 8 3.5848 -0.6617 -0.0035 6 6 2.3086 -1.0803 0.0035 7 6 1.8521 -2.5164 0.0071 8 6 1.6931 -2.9965 -1.4124 9 8 1.9278 -2.2465 -2.3362 10 7 1.2901 -4.2594 -1.6555 11 6 1.0080 -5.1811 -0.5462 12 6 -0.4227 -5.7202 -0.7147 13 7 -0.5821 -6.2021 -2.0939 14 6 -0.9907 -7.4855 -2.3410 15 1 -0.6892 -7.9825 -3.2511 16 6 -1.7924 -8.1478 -1.4213 17 7 -2.4410 -7.4652 -0.5018 18 14 -1.9506 -10.0079 -1.4890 19 1 -0.6121 -10.6254 -1.3083 20 1 -2.8581 -10.4671 -0.4070 21 1 -2.5076 -10.4097 -2.8055 22 6 -0.2947 -5.2821 -3.2033 23 6 1.1301 -4.7412 -3.0347 24 1 -0.3633 0.0029 1.0277 25 1 -0.3633 0.8886 -0.5163 26 1 -0.3634 -0.8914 -0.5113 27 1 2.0367 2.1690 -0.0004 28 1 4.5061 1.2922 -0.0106 29 1 2.5928 -3.1317 0.5180 30 1 0.8964 -2.5926 0.5257 31 1 1.7182 -6.0078 -0.5678 32 1 1.0909 -4.6492 0.4015 33 1 -1.1414 -4.9242 -0.5200 34 1 -0.5866 -6.5427 -0.0185 35 1 -3.0015 -7.9279 0.1406 36 1 -1.0042 -4.4549 -3.1857 37 1 -0.3748 -5.8127 -4.1520 38 1 1.2937 -3.9185 -3.7309 39 1 1.8508 -5.5350 -3.2308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597274548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:00 Heat of formation + Delta-G solvation = 7.464040 kcal Electronic energy + Delta-G solvation = -21959.038027 eV Core-core repulsion = 18676.317439 eV Total energy + Delta-G solvation = -3282.720588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.53304 -39.57952 -36.82634 -34.20419 -33.89835 -32.30861 -31.18418 -30.17408 -28.80059 -27.05349 -25.86490 -23.64355 -22.83376 -21.46769 -20.82099 -19.63429 -18.57756 -17.34202 -16.93710 -16.21732 -15.73696 -15.31601 -15.24392 -14.80365 -14.29640 -13.73891 -13.45823 -13.38291 -13.34062 -13.11619 -12.99063 -12.69727 -12.67219 -12.32342 -11.86833 -11.68776 -11.37191 -11.32474 -10.84968 -10.79199 -10.54076 -10.28355 -10.07785 -9.88498 -9.53793 -9.48715 -8.63103 -8.28398 -8.25849 -6.75491 -5.89637 -3.33654 1.76939 2.61927 2.90410 3.03201 3.32948 3.39054 3.39872 3.51521 4.41559 4.63000 4.85385 4.93511 4.97808 5.19848 5.24218 5.30603 5.39384 5.50078 5.69918 5.73423 5.81512 5.84292 5.89031 5.93225 6.07827 6.10985 6.17234 6.24579 6.30310 6.39840 6.62183 6.75344 6.89204 7.15662 7.21613 7.40354 7.68639 7.85627 8.31938 8.50607 9.08241 9.70696 10.27626 11.18227 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036359 B = 0.003945 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.916301 B = 7096.699197 C = 7300.227001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.167 4.167 3 C -0.210 4.210 4 C -0.043 4.043 5 O -0.172 6.172 6 C 0.011 3.989 7 C -0.061 4.061 8 C 0.511 3.489 9 O -0.548 6.548 10 N -0.596 5.596 11 C 0.077 3.923 12 C 0.157 3.843 13 N -0.591 5.591 14 C -0.257 4.257 15 H 0.067 0.933 16 C 0.005 3.995 17 N -0.902 5.902 18 Si 0.905 3.095 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.132 3.868 23 C 0.096 3.904 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.145 0.855 28 H 0.200 0.800 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.025 0.975 34 H 0.101 0.899 35 H 0.256 0.744 36 H 0.024 0.976 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.584 11.889 3.968 15.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.168 4.168 3 C -0.229 4.229 4 C -0.111 4.111 5 O -0.068 6.068 6 C -0.040 4.040 7 C -0.100 4.100 8 C 0.298 3.702 9 O -0.426 6.426 10 N -0.329 5.329 11 C -0.048 4.048 12 C 0.031 3.969 13 N -0.314 5.314 14 C -0.387 4.387 15 H 0.085 0.915 16 C -0.194 4.194 17 N -0.546 5.546 18 Si 0.734 3.266 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.208 1.208 22 C 0.005 3.995 23 C -0.028 4.028 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.163 0.837 28 H 0.217 0.783 29 H 0.126 0.874 30 H 0.140 0.860 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.043 0.957 34 H 0.119 0.881 35 H 0.066 0.934 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.804 11.986 3.590 15.299 hybrid contribution -0.212 -0.767 0.068 0.799 sum 8.592 11.219 3.659 14.597 Atomic orbital electron populations 1.20179 0.89262 1.02858 1.01760 1.20155 0.97083 0.91941 1.07661 1.21655 0.92671 0.99621 1.08994 1.23878 0.99597 0.80678 1.06916 1.83974 1.28794 1.22719 1.71358 1.21381 0.81013 0.95165 1.06410 1.20135 1.03935 0.89201 0.96761 1.20261 0.77480 0.81900 0.90530 1.90677 1.51446 1.54631 1.45882 1.48049 1.65261 1.11035 1.08512 1.22837 1.01879 0.92434 0.87601 1.21272 0.88726 0.98625 0.88317 1.43972 1.77965 1.09666 0.99760 1.19175 1.24894 0.88222 1.06377 0.91489 1.25056 0.96216 0.98523 0.99631 1.69998 1.30191 1.34215 1.20236 0.86338 0.77547 0.85359 0.77333 1.20936 1.21576 1.20824 1.21284 0.92019 0.93359 0.92834 1.22201 0.99701 0.98723 0.82127 0.91527 0.91597 0.91567 0.83703 0.78338 0.87356 0.85962 0.91545 0.91003 0.95725 0.88112 0.93406 0.95851 0.91504 0.90024 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 9.99 36.01 0.36 -0.67 16 2 C -0.17 -2.36 6.16 -104.74 -0.65 -3.00 16 3 C -0.21 -2.60 10.87 -39.70 -0.43 -3.03 16 4 C -0.04 -0.51 12.09 29.42 0.36 -0.16 16 5 O -0.17 -2.55 10.65 5.70 0.06 -2.49 16 6 C 0.01 0.16 5.81 -35.63 -0.21 -0.05 16 7 C -0.06 -0.84 4.19 -29.04 -0.12 -0.96 16 8 C 0.51 8.95 7.69 -10.99 -0.08 8.87 16 9 O -0.55 -11.39 15.44 5.55 0.09 -11.30 16 10 N -0.60 -10.61 2.94 -172.24 -0.51 -11.11 16 11 C 0.08 1.31 6.53 -3.37 -0.02 1.28 16 12 C 0.16 3.43 5.53 -3.37 -0.02 3.41 16 13 N -0.59 -14.09 2.97 -171.79 -0.51 -14.60 16 14 C -0.26 -6.73 9.58 -15.06 -0.14 -6.88 16 15 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 16 C 0.00 0.12 4.90 -17.43 -0.09 0.04 16 17 N -0.90 -24.82 11.20 55.49 0.62 -24.19 16 18 Si 0.90 20.76 29.59 -169.99 -5.03 15.73 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 C 0.13 2.73 6.67 -3.62 -0.02 2.71 16 23 C 0.10 1.77 6.59 -3.62 -0.02 1.75 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.89 7.79 -51.93 -0.40 0.49 16 27 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 28 H 0.20 1.49 8.06 -52.48 -0.42 1.06 16 29 H 0.11 1.26 7.90 -51.93 -0.41 0.85 16 30 H 0.12 1.47 7.37 -51.93 -0.38 1.09 16 31 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 32 H 0.07 0.98 5.91 -51.93 -0.31 0.67 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 2.43 5.99 -51.93 -0.31 2.11 16 35 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 1.32 7.94 -51.93 -0.41 0.91 16 38 H 0.08 1.49 6.99 -51.93 -0.36 1.13 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 321.78 15.07 4.85 4.85 Total: -1.00 -31.83 321.78 -7.04 -38.87 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.52 Total: 0.95 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -1.09 Total: 3.31 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.39 Total: -49.91 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.15 Total: -13.79 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.83 -7.04 -38.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597274548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.335 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds