Wall clock time and date at job start Tue Mar 31 2020 01:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41384 * 126.57891 * 2 1 4 4 C 1.34519 * 106.83696 * 180.23800 * 3 2 1 5 5 O 1.34301 * 108.42316 * 359.77297 * 4 3 2 6 6 C 1.34310 * 109.47777 * 359.97438 * 5 4 3 7 7 C 1.50696 * 125.79105 * 179.97438 * 6 5 4 8 8 C 1.50693 * 109.47187 * 270.02615 * 7 6 5 9 9 O 1.21284 * 120.00168 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00000 * 180.02562 * 8 7 6 11 11 C 1.46961 * 120.59161 * 359.72277 * 10 8 7 12 12 C 1.53812 * 108.39988 * 124.75936 * 11 10 8 13 13 N 1.46963 * 108.58103 * 49.63469 * 12 11 10 14 14 C 1.36937 * 120.59781 * 124.62630 * 13 12 11 15 15 H 1.07995 * 119.99986 * 208.18828 * 14 13 12 16 16 C 1.38819 * 119.99607 * 28.17836 * 14 13 12 17 17 N 1.31613 * 120.00044 * 17.56364 * 16 14 13 18 18 Si 1.86797 * 119.99810 * 197.55806 * 16 14 13 19 19 H 1.48506 * 109.46934 * 60.00805 * 18 16 14 20 20 H 1.48497 * 109.47150 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47387 * 300.00545 * 18 16 14 22 22 C 1.46963 * 118.81124 * 304.64814 * 13 12 11 23 23 C 1.46963 * 120.59599 * 179.97438 * 10 8 7 24 24 H 1.09003 * 109.46698 * 270.15900 * 1 2 3 25 25 H 1.09002 * 109.47065 * 30.15581 * 1 2 3 26 26 H 1.08996 * 109.47564 * 150.15923 * 1 2 3 27 27 H 1.07991 * 126.58297 * 359.97438 * 3 2 1 28 28 H 1.08003 * 125.78918 * 179.75207 * 4 3 2 29 29 H 1.09003 * 109.46921 * 30.02667 * 7 6 5 30 30 H 1.09001 * 109.47142 * 150.02437 * 7 6 5 31 31 H 1.09008 * 109.60718 * 244.54201 * 11 10 8 32 32 H 1.08996 * 109.61469 * 5.04542 * 11 10 8 33 33 H 1.09003 * 109.74072 * 289.84533 * 12 11 10 34 34 H 1.09000 * 109.53554 * 169.30351 * 12 11 10 35 35 H 0.97001 * 120.00271 * 179.97438 * 17 16 14 36 36 H 1.08996 * 109.60958 * 295.48254 * 22 13 12 37 37 H 1.08998 * 109.75254 * 175.05298 * 22 13 12 38 38 H 1.09000 * 109.61042 * 354.95100 * 23 10 8 39 39 H 1.08996 * 109.60886 * 115.28559 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1354 0.0000 4 6 3.6157 0.6810 -0.0053 5 8 3.5848 -0.6617 -0.0035 6 6 2.3086 -1.0803 0.0035 7 6 1.8521 -2.5164 0.0071 8 6 1.6931 -2.9965 -1.4124 9 8 1.9278 -2.2465 -2.3362 10 7 1.2901 -4.2594 -1.6555 11 6 1.0080 -5.1811 -0.5462 12 6 -0.4227 -5.7202 -0.7147 13 7 -0.5821 -6.2021 -2.0939 14 6 -0.9907 -7.4855 -2.3410 15 1 -0.6892 -7.9825 -3.2511 16 6 -1.7924 -8.1478 -1.4213 17 7 -2.4410 -7.4652 -0.5018 18 14 -1.9506 -10.0079 -1.4890 19 1 -0.6121 -10.6254 -1.3083 20 1 -2.8581 -10.4671 -0.4070 21 1 -2.5076 -10.4097 -2.8055 22 6 -0.2947 -5.2821 -3.2033 23 6 1.1301 -4.7412 -3.0347 24 1 -0.3633 0.0029 1.0277 25 1 -0.3633 0.8886 -0.5163 26 1 -0.3634 -0.8914 -0.5113 27 1 2.0367 2.1690 -0.0004 28 1 4.5061 1.2922 -0.0106 29 1 2.5928 -3.1317 0.5180 30 1 0.8964 -2.5926 0.5257 31 1 1.7182 -6.0078 -0.5678 32 1 1.0909 -4.6492 0.4015 33 1 -1.1414 -4.9242 -0.5200 34 1 -0.5866 -6.5427 -0.0185 35 1 -3.0015 -7.9279 0.1406 36 1 -1.0042 -4.4549 -3.1857 37 1 -0.3748 -5.8127 -4.1520 38 1 1.2937 -3.9185 -3.7309 39 1 1.8508 -5.5350 -3.2308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597274548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:59 Heat of formation + Delta-G solvation = -11.693673 kcal Electronic energy + Delta-G solvation = -21959.868768 eV Core-core repulsion = 18676.317439 eV Total energy + Delta-G solvation = -3283.551328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -43.51685 -41.01346 -38.45133 -35.61123 -35.22316 -33.64982 -32.75112 -31.75660 -29.87790 -28.64557 -27.04406 -25.37476 -24.40678 -22.57099 -22.22409 -20.82828 -20.00881 -18.86177 -18.05761 -17.73066 -17.06948 -16.65885 -16.55458 -16.49047 -15.51584 -15.45255 -15.11741 -14.97079 -14.63189 -14.41726 -14.04465 -13.95213 -13.63080 -13.37836 -13.30184 -13.15137 -12.99904 -12.63265 -12.50282 -12.34001 -12.24397 -12.01897 -11.88107 -11.67168 -10.94005 -10.56980 -10.49283 -9.84747 -9.26140 -8.64817 -7.87891 -5.35427 0.76183 1.50728 1.52506 1.56852 1.59463 1.64931 1.99011 2.24992 2.52976 3.26913 3.54170 3.60158 3.73003 3.98764 4.06574 4.21787 4.24777 4.26768 4.35942 4.42517 4.58497 4.63466 4.66481 4.74771 4.78482 4.81325 4.89238 4.94973 5.07108 5.16844 5.24002 5.32782 5.54373 5.61472 5.67027 5.68487 6.23793 6.36688 6.45268 7.11432 7.13019 7.79723 8.33089 9.17121 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036359 B = 0.003945 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.916301 B = 7096.699197 C = 7300.227001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.180 4.180 3 C -0.226 4.226 4 C -0.038 4.038 5 O -0.191 6.191 6 C -0.020 4.020 7 C -0.054 4.054 8 C 0.511 3.489 9 O -0.583 6.583 10 N -0.600 5.600 11 C 0.092 3.908 12 C 0.161 3.839 13 N -0.608 5.608 14 C -0.269 4.269 15 H 0.067 0.933 16 C -0.042 4.042 17 N -0.930 5.930 18 Si 0.967 3.033 19 H -0.276 1.276 20 H -0.294 1.294 21 H -0.280 1.280 22 C 0.133 3.867 23 C 0.106 3.894 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.168 0.832 28 H 0.240 0.760 29 H 0.134 0.866 30 H 0.140 0.860 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.004 0.996 34 H 0.077 0.923 35 H 0.253 0.747 36 H 0.009 0.991 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.900 12.434 4.697 16.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.181 4.181 3 C -0.245 4.245 4 C -0.105 4.105 5 O -0.088 6.088 6 C -0.070 4.070 7 C -0.093 4.093 8 C 0.301 3.699 9 O -0.464 6.464 10 N -0.332 5.332 11 C -0.032 4.032 12 C 0.035 3.965 13 N -0.332 5.332 14 C -0.399 4.399 15 H 0.085 0.915 16 C -0.238 4.238 17 N -0.576 5.576 18 Si 0.795 3.205 19 H -0.202 1.202 20 H -0.220 1.220 21 H -0.206 1.206 22 C 0.007 3.993 23 C -0.018 4.018 24 H 0.103 0.897 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.186 0.814 28 H 0.256 0.744 29 H 0.152 0.848 30 H 0.158 0.842 31 H 0.091 0.909 32 H 0.130 0.870 33 H 0.022 0.978 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.027 0.973 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.134 12.538 4.318 16.690 hybrid contribution -0.634 -0.827 -0.210 1.063 sum 9.500 11.711 4.108 15.629 Atomic orbital electron populations 1.20205 0.88561 1.02382 1.02807 1.20562 0.97941 0.92656 1.06991 1.22023 0.92740 1.00409 1.09354 1.24747 1.01077 0.79907 1.04765 1.83960 1.28862 1.24170 1.71767 1.21572 0.81392 0.95731 1.08342 1.20160 1.05614 0.89392 0.94184 1.20896 0.76155 0.81041 0.91852 1.90654 1.52919 1.55366 1.47463 1.48115 1.65324 1.11490 1.08267 1.22669 0.98440 0.92971 0.89096 1.21142 0.91291 0.97127 0.86958 1.44240 1.78164 1.09626 1.01160 1.19474 1.24638 0.89391 1.06410 0.91515 1.25739 0.96206 1.02248 0.99580 1.70139 1.31002 1.35499 1.20933 0.85354 0.77470 0.80674 0.76968 1.20197 1.21981 1.20608 1.21319 0.93182 0.92459 0.92339 1.21992 0.98006 0.98826 0.83011 0.89695 0.90774 0.93289 0.81436 0.74434 0.84810 0.84245 0.90912 0.87004 0.97800 0.90486 0.93827 0.97324 0.91052 0.89957 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.94 9.99 71.24 0.71 -1.23 16 2 C -0.18 -4.83 6.16 -19.94 -0.12 -4.95 16 3 C -0.23 -5.12 10.87 22.19 0.24 -4.88 16 4 C -0.04 -0.81 12.09 66.97 0.81 0.00 16 5 O -0.19 -5.32 10.65 -2.53 -0.03 -5.34 16 6 C -0.02 -0.58 5.81 24.83 0.14 -0.44 16 7 C -0.05 -1.40 4.19 29.10 0.12 -1.27 16 8 C 0.51 17.30 7.69 87.65 0.67 17.97 16 9 O -0.58 -23.97 15.44 -3.04 -0.05 -24.02 16 10 N -0.60 -20.62 2.94 -817.25 -2.40 -23.03 16 11 C 0.09 2.98 6.53 86.57 0.57 3.54 16 12 C 0.16 7.04 5.53 86.56 0.48 7.52 16 13 N -0.61 -29.20 2.97 -697.43 -2.07 -31.27 16 14 C -0.27 -14.14 9.58 84.04 0.80 -13.33 16 15 H 0.07 3.43 7.89 -2.91 -0.02 3.41 16 16 C -0.04 -2.20 4.90 84.86 0.42 -1.79 16 17 N -0.93 -51.86 11.20 21.65 0.24 -51.62 16 18 Si 0.97 42.71 29.59 68.60 2.03 44.74 16 19 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 22 C 0.13 5.56 6.67 86.40 0.58 6.13 16 23 C 0.11 3.83 6.59 86.40 0.57 4.40 16 24 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.05 1.30 7.79 -2.39 -0.02 1.28 16 27 H 0.17 2.84 8.06 -2.92 -0.02 2.82 16 28 H 0.24 2.72 8.06 -2.91 -0.02 2.70 16 29 H 0.13 2.70 7.90 -2.39 -0.02 2.68 16 30 H 0.14 3.04 7.37 -2.39 -0.02 3.02 16 31 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 32 H 0.11 2.73 5.91 -2.39 -0.01 2.71 16 33 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.08 3.75 5.99 -2.39 -0.01 3.73 16 35 H 0.25 13.68 8.31 -92.71 -0.77 12.90 16 36 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.07 2.84 7.94 -2.39 -0.02 2.82 16 38 H 0.08 2.98 6.99 -2.39 -0.02 2.96 16 39 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -69.03 321.78 4.76 -64.27 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 1.04 Total: 14.60 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 5.99 Total: 11.67 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -4.23 Total: -105.92 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.07 Total: -29.36 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -69.03 4.76 -64.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597274548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.575 kcal (2) G-P(sol) polarization free energy of solvation -69.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds