Wall clock time and date at job start Tue Mar 31 2020 00:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 114.00028 * 2 1 4 4 C 1.53006 * 109.46703 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47271 * 64.99651 * 4 3 2 6 6 C 1.37099 * 120.00082 * 269.99648 * 5 4 3 7 7 H 1.08004 * 119.99752 * 145.07625 * 6 5 4 8 8 C 1.38949 * 119.99878 * 325.08120 * 6 5 4 9 9 N 1.31408 * 120.00430 * 337.59420 * 8 6 5 10 10 Si 1.86806 * 119.99615 * 157.59097 * 8 6 5 11 11 H 1.48495 * 109.47016 * 60.00166 * 10 8 6 12 12 H 1.48501 * 109.46786 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47044 * 299.99813 * 10 8 6 14 14 C 1.34783 * 120.00108 * 90.00041 * 5 4 3 15 15 O 1.21296 * 119.99494 * 4.94848 * 14 5 4 16 16 C 1.50691 * 120.00140 * 184.95101 * 14 5 4 17 17 C 1.50701 * 109.47178 * 184.64326 * 16 14 5 18 18 C 1.38228 * 120.41389 * 264.99774 * 17 16 14 19 19 N 1.31858 * 120.76153 * 179.97438 * 18 17 16 20 20 C 1.31885 * 121.72669 * 359.97438 * 19 18 17 21 21 C 1.38178 * 120.76227 * 359.97438 * 20 19 18 22 22 C 1.38621 * 120.42390 * 84.95428 * 17 16 14 23 23 C 1.50696 * 120.78847 * 0.02562 * 22 17 16 24 24 H 1.09001 * 109.46798 * 300.00444 * 1 2 3 25 25 H 1.08996 * 109.46878 * 60.00034 * 1 2 3 26 26 H 1.08990 * 109.47447 * 180.02562 * 1 2 3 27 27 H 1.08988 * 109.47627 * 60.00104 * 3 2 1 28 28 H 1.09001 * 109.47293 * 299.99497 * 3 2 1 29 29 H 1.09002 * 109.46803 * 304.99350 * 4 3 2 30 30 H 1.09005 * 109.46574 * 184.99856 * 4 3 2 31 31 H 0.96990 * 120.00657 * 178.51411 * 9 8 6 32 32 H 1.08997 * 109.47241 * 64.63703 * 16 14 5 33 33 H 1.09006 * 109.47333 * 304.63542 * 16 14 5 34 34 H 1.08002 * 119.61836 * 359.95147 * 18 17 16 35 35 H 1.07995 * 119.61683 * 180.02562 * 20 19 18 36 36 H 1.08006 * 120.41519 * 179.74974 * 21 20 19 37 37 H 1.09001 * 109.47561 * 270.00127 * 23 22 17 38 38 H 1.08998 * 109.47106 * 30.00743 * 23 22 17 39 39 H 1.09003 * 109.47243 * 150.00148 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.0969 -0.7989 -1.3368 7 1 3.8623 -1.3058 -2.2612 8 6 4.5215 -1.5281 -0.2329 9 7 5.2123 -0.9393 0.7174 10 14 4.1103 -3.3454 -0.0997 11 1 4.6951 -4.0713 -1.2556 12 1 4.6727 -3.8889 1.1627 13 1 2.6356 -3.5205 -0.0997 14 6 4.2616 1.3334 -2.3219 15 8 4.2415 2.5421 -2.2220 16 6 4.6062 0.6919 -3.6411 17 6 4.9922 1.7589 -4.6329 18 6 4.0536 2.2743 -5.5071 19 7 4.3837 3.2083 -6.3773 20 6 5.6108 3.6861 -6.4498 21 6 6.6018 3.2197 -5.6073 22 6 6.2927 2.2365 -4.6796 23 6 7.3452 1.7009 -3.7435 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.6888 1.8463 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8515 0.5681 0.8410 30 1 3.9786 2.1764 0.0889 31 1 5.4901 -1.4431 1.4982 32 1 3.7417 0.1436 -4.0153 33 1 5.4410 0.0045 -3.5039 34 1 3.0382 1.9074 -5.4772 35 1 5.8436 4.4514 -7.1754 36 1 7.6058 3.6122 -5.6743 37 1 7.3573 2.2970 -2.8310 38 1 7.1183 0.6637 -3.4970 39 1 8.3214 1.7546 -4.2254 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597755683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:41 Heat of formation + Delta-G solvation = -43.389368 kcal Electronic energy + Delta-G solvation = -22189.455180 eV Core-core repulsion = 18904.529423 eV Total energy + Delta-G solvation = -3284.925757 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.04168 -38.50930 -36.95216 -34.75884 -33.85811 -31.99812 -31.57853 -29.52917 -27.87590 -26.77313 -25.76240 -24.63550 -22.72327 -21.94530 -20.92662 -19.03673 -16.94466 -16.33555 -16.24469 -16.01716 -15.40775 -15.35281 -14.73082 -14.50157 -14.28162 -14.04127 -13.70702 -13.48952 -12.80538 -12.61283 -12.48188 -12.31828 -12.24846 -11.98661 -11.65217 -11.24728 -11.18137 -11.03160 -10.86228 -10.80561 -10.61964 -10.38287 -10.04998 -9.18626 -9.07715 -9.02186 -8.96625 -8.71837 -8.27867 -7.51766 -6.33245 -3.99340 1.51875 1.67226 3.17348 3.26123 3.31785 3.85706 4.10983 4.21292 4.51795 4.74784 4.84928 5.06311 5.10076 5.14401 5.35648 5.43881 5.66106 5.72112 5.76600 5.83118 5.92183 5.96123 5.99481 6.03300 6.06257 6.15484 6.30390 6.34259 6.39772 6.43755 6.52890 6.72730 6.86555 7.12257 7.28272 7.48184 7.81188 7.99480 8.33457 8.37206 9.12216 9.51409 9.92976 10.68377 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018662 B = 0.005805 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.035072 B = 4822.441344 C = 5534.205821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.054 3.946 4 C 0.109 3.891 5 N -0.428 5.428 6 C -0.326 4.326 7 H 0.087 0.913 8 C 0.053 3.947 9 N -0.861 5.861 10 Si 0.912 3.088 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.271 1.271 14 C 0.472 3.528 15 O -0.604 6.604 16 C -0.085 4.085 17 C -0.095 4.095 18 C 0.107 3.893 19 N -0.494 5.494 20 C 0.083 3.917 21 C -0.177 4.177 22 C -0.028 4.028 23 C -0.118 4.118 24 H 0.029 0.971 25 H 0.031 0.969 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.269 0.731 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.128 0.872 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.662 1.766 -5.520 5.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C -0.023 4.023 4 C -0.015 4.015 5 N -0.146 5.146 6 C -0.454 4.454 7 H 0.105 0.895 8 C -0.153 4.153 9 N -0.498 5.498 10 Si 0.738 3.262 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.196 1.196 14 C 0.261 3.739 15 O -0.491 6.491 16 C -0.125 4.125 17 C -0.097 4.097 18 C -0.050 4.050 19 N -0.203 5.203 20 C -0.073 4.073 21 C -0.197 4.197 22 C -0.036 4.036 23 C -0.175 4.175 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.135 0.865 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.146 0.854 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.086 2.446 -5.830 6.415 hybrid contribution 0.065 -1.027 0.846 1.332 sum -1.021 1.420 -4.984 5.282 Atomic orbital electron populations 1.22645 0.83550 1.01713 0.98788 1.88164 1.17234 1.27549 1.94999 1.23016 0.96548 0.84375 0.98409 1.21513 0.89258 0.99203 0.91555 1.43308 1.56040 1.06241 1.09009 1.19217 1.45004 0.80714 1.00461 0.89550 1.25167 0.93837 0.99769 0.96513 1.69895 1.31629 1.38057 1.10222 0.86258 0.79396 0.82988 0.77511 1.20070 1.21206 1.19600 1.20130 0.80711 0.86719 0.86312 1.90545 1.58295 1.14577 1.85679 1.20416 1.03480 0.96158 0.92472 1.20482 0.93663 0.98593 0.97004 1.22518 0.99013 0.92399 0.91058 1.67598 1.20028 1.10805 1.21874 1.22532 0.88658 0.98356 0.97791 1.21907 1.00868 0.99004 0.97922 1.20162 0.94734 0.94099 0.94627 1.20856 0.95770 1.02447 0.98380 0.95226 0.95007 0.90457 0.94353 0.94461 0.86537 0.91083 0.92120 0.89298 0.88000 0.83380 0.83499 0.85434 0.90190 0.90341 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.65 10.18 -35.23 -0.36 -8.01 16 3 C 0.05 1.12 6.28 37.16 0.23 1.35 16 4 C 0.11 2.55 5.47 -4.04 -0.02 2.53 16 5 N -0.43 -10.41 2.52 -114.81 -0.29 -10.70 16 6 C -0.33 -8.01 8.10 -14.93 -0.12 -8.13 16 7 H 0.09 2.03 7.15 -52.48 -0.38 1.65 16 8 C 0.05 1.30 4.96 -17.47 -0.09 1.22 16 9 N -0.86 -22.24 11.34 55.50 0.63 -21.61 16 10 Si 0.91 19.57 29.61 -169.99 -5.03 14.54 16 11 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 12 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 14 C 0.47 11.04 7.61 -10.99 -0.08 10.96 16 15 O -0.60 -15.56 15.60 5.54 0.09 -15.47 16 16 C -0.09 -1.64 3.98 -29.04 -0.12 -1.76 16 17 C -0.10 -1.75 4.40 -104.48 -0.46 -2.21 16 18 C 0.11 1.90 10.84 -17.54 -0.19 1.71 16 19 N -0.49 -8.61 10.36 -13.25 -0.14 -8.74 16 20 C 0.08 1.25 11.18 -17.55 -0.20 1.06 16 21 C -0.18 -2.63 9.82 -39.44 -0.39 -3.02 16 22 C -0.03 -0.48 5.92 -104.32 -0.62 -1.10 16 23 C -0.12 -1.85 9.67 36.00 0.35 -1.50 16 24 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.04 0.70 8.14 -51.94 -0.42 0.27 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.12 2.95 5.37 -51.93 -0.28 2.67 16 30 H 0.07 1.69 7.36 -51.93 -0.38 1.31 16 31 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 32 H 0.09 1.58 7.91 -51.93 -0.41 1.17 16 33 H 0.10 1.93 6.04 -51.93 -0.31 1.61 16 34 H 0.15 2.38 8.06 -52.49 -0.42 1.96 16 35 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.08 1.27 6.17 -51.93 -0.32 0.95 16 39 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 329.59 15.07 4.97 4.97 Total: -1.00 -30.11 329.59 -6.16 -36.27 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.44 Total: 6.05 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -0.58 Total: 2.72 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.20 Total: -41.06 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.27 Total: -23.48 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.11 -6.16 -36.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.122 kcal (2) G-P(sol) polarization free energy of solvation -30.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds