Wall clock time and date at job start Tue Mar 31 2020 01:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41389 * 126.80390 * 2 1 4 4 C 1.35449 * 103.98384 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.77454 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47429 * 89.99564 * 5 4 3 7 7 O 1.21285 * 119.99847 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00168 * 180.02562 * 6 5 4 9 9 C 1.46931 * 120.63030 * 359.97438 * 8 6 5 10 10 C 1.53200 * 108.77279 * 126.37310 * 9 8 6 11 11 C 1.53039 * 109.31160 * 54.63574 * 10 9 8 12 12 C 1.53046 * 109.52798 * 298.64112 * 11 10 9 13 13 H 1.08994 * 109.49581 * 301.40708 * 12 11 10 14 14 C 1.50700 * 109.49577 * 181.31010 * 12 11 10 15 15 H 1.07999 * 120.00091 * 0.02562 * 14 12 11 16 16 C 1.37881 * 119.99871 * 180.02562 * 14 12 11 17 17 N 1.31514 * 119.99744 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00059 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47225 * 89.99840 * 18 16 14 20 20 H 1.48495 * 109.47370 * 209.99931 * 18 16 14 21 21 H 1.48502 * 109.47021 * 329.99933 * 18 16 14 22 22 C 1.46928 * 120.63178 * 179.97438 * 8 6 5 23 23 O 1.34033 * 106.44991 * 0.23746 * 4 3 2 24 24 N 1.20931 * 111.56690 * 359.56464 * 23 4 3 25 25 H 1.09000 * 109.46932 * 90.00070 * 1 2 3 26 26 H 1.08998 * 109.47283 * 210.00532 * 1 2 3 27 27 H 1.09008 * 109.46753 * 330.00246 * 1 2 3 28 28 H 1.07995 * 128.00679 * 359.96086 * 3 2 1 29 29 H 1.09002 * 109.47075 * 329.99938 * 5 4 3 30 30 H 1.08996 * 109.47487 * 210.00110 * 5 4 3 31 31 H 1.08998 * 109.58425 * 6.59260 * 9 8 6 32 32 H 1.08995 * 109.70793 * 246.22878 * 9 8 6 33 33 H 1.08997 * 109.49280 * 294.68615 * 10 9 8 34 34 H 1.08996 * 109.52417 * 174.60413 * 10 9 8 35 35 H 1.09002 * 109.46050 * 58.65698 * 11 10 9 36 36 H 1.09004 * 109.46034 * 178.62914 * 11 10 9 37 37 H 0.97002 * 119.99462 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.58766 * 353.41859 * 22 8 6 39 39 H 1.08998 * 109.58326 * 113.83934 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6025 0.6068 0.0006 5 6 4.9022 1.3695 0.0003 6 6 5.3352 1.6248 1.4210 7 8 4.6550 1.2270 2.3431 8 7 6.4777 2.2961 1.6670 9 6 7.3119 2.7847 0.5606 10 6 7.5587 4.2842 0.7541 11 6 8.1538 4.5240 2.1435 12 6 7.1635 4.0553 3.2121 13 1 6.2239 4.5960 3.0994 14 6 7.7367 4.3213 4.5803 15 1 8.7098 4.7793 4.6784 16 6 7.0187 3.9799 5.7068 17 7 5.8335 3.4227 5.5873 18 14 7.7288 4.3102 7.4026 19 1 7.3200 5.6642 7.8553 20 1 7.2203 3.2942 8.3587 21 1 9.2107 4.2349 7.3420 22 6 6.9127 2.5532 3.0467 23 8 3.4538 -0.7253 -0.0044 24 7 2.2868 -1.0423 0.0007 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 2.0710 2.1743 -0.0006 29 1 4.7652 2.3206 -0.5142 30 1 5.6661 0.7855 -0.5130 31 1 6.7976 2.6182 -0.3859 32 1 8.2646 2.2551 0.5570 33 1 6.6152 4.8226 0.6646 34 1 8.2542 4.6400 -0.0059 35 1 9.0848 3.9655 2.2411 36 1 8.3530 5.5877 2.2746 37 1 5.3285 3.1822 6.3798 38 1 6.1350 2.2339 3.7405 39 1 7.8326 2.0044 3.2480 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597901409.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:15 Heat of formation + Delta-G solvation = -7.279319 kcal Electronic energy + Delta-G solvation = -21832.723929 eV Core-core repulsion = 18549.364022 eV Total energy + Delta-G solvation = -3283.359908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.87589 -41.00199 -38.37550 -35.73016 -35.35078 -34.36949 -33.39174 -31.57347 -29.64876 -29.50954 -26.95311 -25.89478 -24.07524 -23.40564 -21.96885 -20.93186 -19.74558 -18.83431 -18.40808 -18.17132 -17.66729 -16.69086 -16.56109 -16.29084 -15.44241 -15.16588 -14.84806 -14.59023 -14.53307 -14.21028 -14.13342 -13.98030 -13.85590 -13.46752 -13.31793 -13.09643 -12.89320 -12.65816 -12.26581 -12.21284 -12.03522 -11.75190 -11.59965 -11.14433 -10.93869 -10.92763 -10.80365 -10.51859 -10.25423 -9.38856 -8.11742 -6.28374 0.43637 1.26434 1.39202 1.40705 1.50925 1.71372 2.04456 2.35437 2.43689 3.17141 3.29967 3.42792 3.67956 4.05018 4.12142 4.16645 4.24134 4.35151 4.40560 4.52325 4.60679 4.66763 4.69017 4.80674 4.86148 4.89357 4.91456 4.96221 5.15840 5.25591 5.30255 5.34381 5.40144 5.55872 5.67142 5.92759 6.02286 6.34232 6.68292 6.85427 7.27230 7.32932 7.42459 8.91185 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.004543 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.378515 B = 6161.643423 C = 7082.505365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.009 3.991 3 C -0.229 4.229 4 C -0.011 4.011 5 C -0.048 4.048 6 C 0.497 3.503 7 O -0.595 6.595 8 N -0.606 5.606 9 C 0.098 3.902 10 C -0.127 4.127 11 C -0.107 4.107 12 C 0.039 3.961 13 H -0.012 1.012 14 C -0.536 4.536 15 H 0.061 0.939 16 C 0.010 3.990 17 N -0.916 5.916 18 Si 0.954 3.046 19 H -0.275 1.275 20 H -0.290 1.290 21 H -0.261 1.261 22 C 0.125 3.875 23 O 0.078 5.922 24 N -0.401 5.401 25 H 0.102 0.898 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.192 0.808 29 H 0.166 0.834 30 H 0.153 0.847 31 H 0.124 0.876 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.106 0.894 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.258 0.742 38 H 0.072 0.928 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.201 -1.115 -17.803 17.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.149 4.149 3 C -0.250 4.250 4 C -0.075 4.075 5 C -0.088 4.088 6 C 0.286 3.714 7 O -0.476 6.476 8 N -0.338 5.338 9 C -0.023 4.023 10 C -0.165 4.165 11 C -0.145 4.145 12 C 0.019 3.981 13 H 0.006 0.994 14 C -0.575 4.575 15 H 0.079 0.921 16 C -0.189 4.189 17 N -0.555 5.555 18 Si 0.780 3.220 19 H -0.200 1.200 20 H -0.216 1.216 21 H -0.185 1.185 22 C 0.002 3.998 23 O 0.016 5.984 24 N -0.110 5.110 25 H 0.120 0.880 26 H 0.092 0.908 27 H 0.115 0.885 28 H 0.209 0.791 29 H 0.184 0.816 30 H 0.171 0.829 31 H 0.142 0.858 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.124 0.876 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.873 -2.707 -17.225 17.672 hybrid contribution 0.056 0.864 1.809 2.006 sum -2.817 -1.843 -15.416 15.780 Atomic orbital electron populations 1.20319 0.83515 1.04482 1.04759 1.24245 1.00724 0.88588 1.01385 1.22760 0.90954 1.02111 1.09216 1.24138 0.98591 0.83361 1.01437 1.20359 0.91913 1.02705 0.93838 1.21110 0.80659 0.77849 0.91787 1.90747 1.55009 1.53374 1.48497 1.48494 1.22493 1.54025 1.08758 1.22152 0.96013 0.94813 0.89330 1.21928 1.01659 0.95831 0.97109 1.21531 0.98226 1.00061 0.94687 1.18901 0.94070 0.91252 0.93833 0.99352 1.21567 1.03804 1.40263 0.91821 0.92058 1.25874 0.95044 0.94798 1.03213 1.70091 1.13000 1.42353 1.30012 0.85607 0.79123 0.77727 0.79552 1.20022 1.21611 1.18547 1.21667 0.98413 0.98450 0.81256 1.84721 1.21783 1.23675 1.68232 1.73775 0.89709 1.25498 1.21989 0.87965 0.90808 0.88539 0.79110 0.81639 0.82924 0.85770 0.90019 0.92548 0.87613 0.92670 0.93206 0.93297 0.90938 0.94752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.38 10.47 71.23 0.75 -0.63 16 2 C 0.01 0.25 7.33 43.58 0.32 0.57 16 3 C -0.23 -6.12 11.06 22.40 0.25 -5.87 16 4 C -0.01 -0.32 5.98 25.04 0.15 -0.17 16 5 C -0.05 -1.07 4.61 29.10 0.13 -0.93 16 6 C 0.50 18.33 7.69 87.66 0.67 19.00 16 7 O -0.60 -29.93 15.45 -3.04 -0.05 -29.98 16 8 N -0.61 -21.98 2.97 -818.89 -2.43 -24.41 16 9 C 0.10 2.25 6.34 86.36 0.55 2.80 16 10 C -0.13 -3.19 6.08 30.67 0.19 -3.00 16 11 C -0.11 -3.88 5.11 30.62 0.16 -3.72 16 12 C 0.04 1.89 2.25 -11.46 -0.03 1.86 16 13 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 14 C -0.54 -29.24 8.56 25.60 0.22 -29.02 16 15 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 16 C 0.01 0.56 5.30 84.66 0.45 1.01 16 17 N -0.92 -55.94 11.40 21.45 0.24 -55.70 16 18 Si 0.95 44.33 29.54 68.60 2.03 46.36 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 21 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 22 C 0.12 6.05 5.40 86.36 0.47 6.52 16 23 O 0.08 2.57 11.20 71.69 0.80 3.37 16 24 N -0.40 -13.30 12.07 -49.55 -0.60 -13.90 16 25 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.19 4.02 8.06 -2.91 -0.02 4.00 16 29 H 0.17 2.24 7.69 -2.39 -0.02 2.23 16 30 H 0.15 2.20 7.94 -2.39 -0.02 2.18 16 31 H 0.12 1.59 5.93 -2.39 -0.01 1.57 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 38 H 0.07 4.31 5.13 -2.39 -0.01 4.30 16 39 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -80.66 322.36 5.31 -75.35 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 1.05 Total: 10.49 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 4.27 Total: -11.59 kcal Atomic # 7 Polarization: -91.22 SS G_CDS: -2.79 Total: -94.01 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: 0.76 Total: -26.60 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -80.66 5.31 -75.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597901409.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.066 kcal (2) G-P(sol) polarization free energy of solvation -80.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds