Wall clock time and date at job start Tue Mar 31 2020 01:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41380 * 126.80138 * 2 1 4 4 C 1.35455 * 103.98229 * 180.09442 * 3 2 1 5 5 C 1.50701 * 126.77514 * 179.91008 * 4 3 2 6 6 C 1.50702 * 109.47081 * 89.71074 * 5 4 3 7 7 O 1.21285 * 119.99819 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00175 * 180.02562 * 6 5 4 9 9 C 1.46926 * 120.62994 * 359.97438 * 8 6 5 10 10 C 1.53192 * 108.77820 * 233.62963 * 9 8 6 11 11 C 1.53033 * 109.31270 * 305.36633 * 10 9 8 12 12 C 1.53041 * 109.53898 * 61.36218 * 11 10 9 13 13 H 1.09002 * 109.50075 * 58.58639 * 12 11 10 14 14 C 1.50700 * 109.52504 * 178.66881 * 12 11 10 15 15 H 1.08002 * 119.99900 * 359.85530 * 14 12 11 16 16 C 1.37879 * 120.00143 * 179.85648 * 14 12 11 17 17 N 1.31508 * 119.99917 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00097 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47379 * 89.99353 * 18 16 14 20 20 H 1.48496 * 109.47130 * 210.00172 * 18 16 14 21 21 H 1.48502 * 109.46642 * 329.99617 * 18 16 14 22 22 C 1.46927 * 120.63425 * 180.02562 * 8 6 5 23 23 O 1.34040 * 106.44789 * 359.64498 * 4 3 2 24 24 N 1.20930 * 111.56661 * 0.24549 * 23 4 3 25 25 H 1.08996 * 109.47188 * 270.28569 * 1 2 3 26 26 H 1.08995 * 109.47353 * 30.28873 * 1 2 3 27 27 H 1.09001 * 109.47118 * 150.29152 * 1 2 3 28 28 H 1.07998 * 128.00796 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.46882 * 329.71569 * 5 4 3 30 30 H 1.08989 * 109.47125 * 209.71176 * 5 4 3 31 31 H 1.09006 * 109.58406 * 353.41879 * 9 8 6 32 32 H 1.09002 * 109.59019 * 113.83868 * 9 8 6 33 33 H 1.09000 * 109.49511 * 65.31256 * 10 9 8 34 34 H 1.08995 * 109.49883 * 185.40976 * 10 9 8 35 35 H 1.08999 * 109.45957 * 301.34633 * 11 10 9 36 36 H 1.09004 * 109.45285 * 181.37911 * 11 10 9 37 37 H 0.96998 * 120.00335 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.58859 * 246.15938 * 22 8 6 39 39 H 1.09001 * 109.58530 * 6.44176 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6025 0.6067 -0.0022 5 6 4.9022 1.3695 -0.0050 6 6 5.3346 1.6305 1.4148 7 8 4.6540 1.2365 2.3382 8 7 6.4769 2.3028 1.6586 9 6 7.3116 2.7869 0.5507 10 6 8.7411 2.2732 0.7492 11 6 9.2385 2.6841 2.1369 12 6 8.3455 2.0538 3.2081 13 1 8.3600 0.9691 3.1017 14 6 8.8550 2.4320 4.5750 15 1 9.7301 3.0576 4.6710 16 6 8.2039 1.9794 5.7029 17 7 7.1381 1.2180 5.5860 18 14 8.8351 2.4488 7.3973 19 1 8.1887 3.7125 7.8337 20 1 8.5116 1.3681 8.3629 21 1 10.3068 2.6390 7.3420 22 6 6.9119 2.5645 3.0374 23 8 3.4538 -0.7254 0.0047 24 7 2.2867 -1.0424 0.0057 25 1 -0.3633 0.0051 1.0276 26 1 -0.3634 0.8873 -0.5183 27 1 -0.3633 -0.8926 -0.5093 28 1 2.0710 2.1743 0.0004 29 1 4.7654 2.3184 -0.5234 30 1 5.6663 0.7834 -0.5155 31 1 6.9170 2.4134 -0.3943 32 1 7.3128 3.8769 0.5432 33 1 8.7519 1.1864 0.6660 34 1 9.3914 2.7033 -0.0125 35 1 9.2039 3.7697 2.2282 36 1 10.2643 2.3409 2.2712 37 1 6.6798 0.8999 6.3795 38 1 6.8804 3.6363 3.2333 39 1 6.2521 2.0464 3.7333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597901411.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:21 Heat of formation + Delta-G solvation = 14.688965 kcal Electronic energy + Delta-G solvation = -21823.966556 eV Core-core repulsion = 18541.559265 eV Total energy + Delta-G solvation = -3282.407291 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.75738 -39.52364 -36.81793 -34.68230 -33.61543 -33.05555 -31.80969 -29.93970 -28.65945 -28.35163 -25.08284 -24.40304 -22.96192 -21.87674 -20.64454 -19.55396 -18.34995 -17.56051 -17.05105 -16.65510 -16.03432 -15.28951 -15.01314 -14.58800 -14.23531 -13.75942 -13.65826 -13.40666 -13.28365 -13.01057 -12.80919 -12.62432 -12.53031 -12.29059 -11.93398 -11.82585 -11.03705 -10.99299 -10.91979 -10.54283 -10.42627 -10.26545 -9.93163 -9.89823 -9.54325 -9.22191 -9.14537 -8.85540 -8.45604 -7.81127 -6.00971 -4.10273 1.57142 2.32608 3.07378 3.17095 3.30236 3.37703 3.39719 3.72959 4.26466 4.41668 4.44554 4.85730 5.02789 5.10138 5.20854 5.25282 5.29282 5.39705 5.40964 5.44110 5.54771 5.61349 5.75243 5.82545 5.94583 6.11803 6.16999 6.27028 6.56676 6.62856 6.81053 6.93971 7.09819 7.22394 7.61452 7.84639 7.96909 8.17855 8.36472 8.39174 8.76400 8.94193 9.55760 11.04188 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021660 B = 0.004508 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.398675 B = 6209.198308 C = 7153.045955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.013 3.987 3 C -0.225 4.225 4 C 0.004 3.996 5 C -0.065 4.065 6 C 0.506 3.494 7 O -0.527 6.527 8 N -0.604 5.604 9 C 0.106 3.894 10 C -0.135 4.135 11 C -0.111 4.111 12 C 0.040 3.960 13 H 0.029 0.971 14 C -0.522 4.522 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.880 5.880 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.113 3.887 23 O 0.103 5.897 24 N -0.368 5.368 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.169 0.831 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.264 0.736 38 H 0.043 0.957 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.269 3.133 -15.075 16.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C -0.247 4.247 4 C -0.060 4.060 5 C -0.106 4.106 6 C 0.292 3.708 7 O -0.403 6.403 8 N -0.337 5.337 9 C -0.017 4.017 10 C -0.173 4.173 11 C -0.149 4.149 12 C 0.021 3.979 13 H 0.047 0.953 14 C -0.561 4.561 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.517 5.517 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.007 4.007 23 O 0.037 5.963 24 N -0.072 5.072 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.186 0.814 29 H 0.139 0.861 30 H 0.132 0.868 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.995 1.499 -14.440 16.115 hybrid contribution 0.349 1.168 0.960 1.552 sum -6.646 2.667 -13.479 15.264 Atomic orbital electron populations 1.20127 0.86159 1.03368 1.03365 1.23518 0.98886 0.88954 1.03209 1.22286 0.91085 1.00965 1.10318 1.23674 0.97242 0.83782 1.01341 1.20262 0.91962 1.00258 0.98143 1.20046 0.81848 0.79192 0.89735 1.90772 1.53412 1.50563 1.45602 1.48495 1.21156 1.54624 1.09415 1.21701 0.91892 0.98929 0.89227 1.21953 0.95078 1.01165 0.99114 1.21625 0.99763 1.00007 0.93471 1.18961 0.89830 0.96237 0.92917 0.95277 1.21074 1.12691 1.32257 0.90079 0.92345 1.25056 0.94932 0.94710 0.99308 1.69879 1.18578 1.33724 1.29545 0.86592 0.79159 0.78151 0.84111 1.20641 1.21198 1.19907 1.22315 1.00390 0.99313 0.78705 1.84796 1.21543 1.22639 1.67290 1.73804 0.89316 1.24180 1.19949 0.90220 0.90196 0.90779 0.81390 0.86061 0.86758 0.91073 0.91755 0.92013 0.92098 0.93158 0.92965 0.92608 0.93906 0.85928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.47 36.01 0.38 -0.34 16 2 C 0.01 0.18 7.33 -82.10 -0.60 -0.42 16 3 C -0.22 -3.07 11.06 -39.38 -0.44 -3.50 16 4 C 0.00 0.06 5.98 -35.30 -0.21 -0.16 16 5 C -0.07 -0.83 4.61 -29.03 -0.13 -0.97 16 6 C 0.51 9.50 7.69 -10.99 -0.08 9.41 16 7 O -0.53 -12.71 15.45 5.55 0.09 -12.63 16 8 N -0.60 -11.26 2.97 -172.80 -0.51 -11.78 16 9 C 0.11 1.45 6.34 -3.71 -0.02 1.43 16 10 C -0.13 -1.99 6.08 -26.61 -0.16 -2.15 16 11 C -0.11 -2.10 5.11 -26.69 -0.14 -2.24 16 12 C 0.04 0.96 2.25 -91.68 -0.21 0.75 16 13 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 14 C -0.52 -13.97 8.57 -34.44 -0.29 -14.27 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 17 N -0.88 -25.70 11.39 55.43 0.63 -25.06 16 18 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 22 C 0.11 2.65 5.39 -3.74 -0.02 2.63 16 23 O 0.10 1.75 11.20 17.17 0.19 1.95 16 24 N -0.37 -6.18 12.07 33.42 0.40 -5.77 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.12 1.08 7.94 -51.93 -0.41 0.67 16 30 H 0.11 1.19 7.69 -51.94 -0.40 0.79 16 31 H 0.07 0.70 5.93 -51.93 -0.31 0.39 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.12 3.43 5.12 -51.93 -0.27 3.16 16 LS Contribution 322.34 15.07 4.86 4.86 Total: -1.00 -33.48 322.34 -6.97 -40.45 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.58 Total: 0.02 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -2.03 Total: -8.19 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.52 Total: -42.61 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.28 Total: -10.68 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.48 -6.97 -40.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597901411.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.140 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds