Wall clock time and date at job start Tue Mar 31 2020 01:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41380 * 126.80138 * 2 1 4 4 C 1.35455 * 103.98229 * 180.09442 * 3 2 1 5 5 C 1.50701 * 126.77514 * 179.91008 * 4 3 2 6 6 C 1.50702 * 109.47081 * 89.71074 * 5 4 3 7 7 O 1.21285 * 119.99819 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00175 * 180.02562 * 6 5 4 9 9 C 1.46926 * 120.62994 * 359.97438 * 8 6 5 10 10 C 1.53192 * 108.77820 * 233.62963 * 9 8 6 11 11 C 1.53033 * 109.31270 * 305.36633 * 10 9 8 12 12 C 1.53041 * 109.53898 * 61.36218 * 11 10 9 13 13 H 1.09002 * 109.50075 * 58.58639 * 12 11 10 14 14 C 1.50700 * 109.52504 * 178.66881 * 12 11 10 15 15 H 1.08002 * 119.99900 * 359.85530 * 14 12 11 16 16 C 1.37879 * 120.00143 * 179.85648 * 14 12 11 17 17 N 1.31508 * 119.99917 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00097 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47379 * 89.99353 * 18 16 14 20 20 H 1.48496 * 109.47130 * 210.00172 * 18 16 14 21 21 H 1.48502 * 109.46642 * 329.99617 * 18 16 14 22 22 C 1.46927 * 120.63425 * 180.02562 * 8 6 5 23 23 O 1.34040 * 106.44789 * 359.64498 * 4 3 2 24 24 N 1.20930 * 111.56661 * 0.24549 * 23 4 3 25 25 H 1.08996 * 109.47188 * 270.28569 * 1 2 3 26 26 H 1.08995 * 109.47353 * 30.28873 * 1 2 3 27 27 H 1.09001 * 109.47118 * 150.29152 * 1 2 3 28 28 H 1.07998 * 128.00796 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.46882 * 329.71569 * 5 4 3 30 30 H 1.08989 * 109.47125 * 209.71176 * 5 4 3 31 31 H 1.09006 * 109.58406 * 353.41879 * 9 8 6 32 32 H 1.09002 * 109.59019 * 113.83868 * 9 8 6 33 33 H 1.09000 * 109.49511 * 65.31256 * 10 9 8 34 34 H 1.08995 * 109.49883 * 185.40976 * 10 9 8 35 35 H 1.08999 * 109.45957 * 301.34633 * 11 10 9 36 36 H 1.09004 * 109.45285 * 181.37911 * 11 10 9 37 37 H 0.96998 * 120.00335 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.58859 * 246.15938 * 22 8 6 39 39 H 1.09001 * 109.58530 * 6.44176 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6025 0.6067 -0.0022 5 6 4.9022 1.3695 -0.0050 6 6 5.3346 1.6305 1.4148 7 8 4.6540 1.2365 2.3382 8 7 6.4769 2.3028 1.6586 9 6 7.3116 2.7869 0.5507 10 6 8.7411 2.2732 0.7492 11 6 9.2385 2.6841 2.1369 12 6 8.3455 2.0538 3.2081 13 1 8.3600 0.9691 3.1017 14 6 8.8550 2.4320 4.5750 15 1 9.7301 3.0576 4.6710 16 6 8.2039 1.9794 5.7029 17 7 7.1381 1.2180 5.5860 18 14 8.8351 2.4488 7.3973 19 1 8.1887 3.7125 7.8337 20 1 8.5116 1.3681 8.3629 21 1 10.3068 2.6390 7.3420 22 6 6.9119 2.5645 3.0374 23 8 3.4538 -0.7254 0.0047 24 7 2.2867 -1.0424 0.0057 25 1 -0.3633 0.0051 1.0276 26 1 -0.3634 0.8873 -0.5183 27 1 -0.3633 -0.8926 -0.5093 28 1 2.0710 2.1743 0.0004 29 1 4.7654 2.3184 -0.5234 30 1 5.6663 0.7834 -0.5155 31 1 6.9170 2.4134 -0.3943 32 1 7.3128 3.8769 0.5432 33 1 8.7519 1.1864 0.6660 34 1 9.3914 2.7033 -0.0125 35 1 9.2039 3.7697 2.2282 36 1 10.2643 2.3409 2.2712 37 1 6.6798 0.8999 6.3795 38 1 6.8804 3.6363 3.2333 39 1 6.2521 2.0464 3.7333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597901411.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:19 Heat of formation + Delta-G solvation = -7.465447 kcal Electronic energy + Delta-G solvation = -21824.927243 eV Core-core repulsion = 18541.559265 eV Total energy + Delta-G solvation = -3283.367979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -45.86728 -41.00212 -38.37989 -35.72344 -35.35477 -34.36407 -33.39627 -31.57692 -29.64579 -29.50037 -26.95832 -25.89482 -24.06322 -23.41132 -21.98910 -20.90969 -19.75320 -18.83187 -18.41409 -18.16567 -17.66529 -16.74073 -16.46195 -16.32044 -15.42174 -15.17195 -14.88196 -14.73297 -14.35606 -14.22922 -14.16328 -13.96176 -13.84259 -13.47099 -13.27908 -13.12250 -12.89403 -12.63804 -12.27053 -12.23595 -12.01624 -11.75024 -11.60478 -11.13398 -10.94038 -10.93819 -10.80739 -10.53011 -10.25257 -9.38689 -8.11779 -6.29042 0.44339 1.27581 1.39532 1.40057 1.50898 1.71434 2.05455 2.36661 2.43883 3.16809 3.31786 3.42464 3.68248 4.04503 4.14121 4.16052 4.24494 4.34853 4.40319 4.53019 4.61150 4.66194 4.68205 4.80556 4.85620 4.90564 4.91091 4.97649 5.15025 5.27034 5.29787 5.33641 5.39563 5.55462 5.66944 5.92500 6.02368 6.33542 6.68386 6.85061 7.28232 7.33030 7.42027 8.91108 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021660 B = 0.004508 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.398675 B = 6209.198308 C = 7153.045955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.008 3.992 3 C -0.225 4.225 4 C -0.014 4.014 5 C -0.049 4.049 6 C 0.497 3.503 7 O -0.595 6.595 8 N -0.606 5.606 9 C 0.099 3.901 10 C -0.129 4.129 11 C -0.107 4.107 12 C 0.037 3.963 13 H -0.016 1.016 14 C -0.536 4.536 15 H 0.062 0.938 16 C 0.009 3.991 17 N -0.917 5.917 18 Si 0.956 3.044 19 H -0.274 1.274 20 H -0.290 1.290 21 H -0.262 1.262 22 C 0.125 3.875 23 O 0.073 5.927 24 N -0.403 5.403 25 H 0.082 0.918 26 H 0.110 0.890 27 H 0.080 0.920 28 H 0.198 0.802 29 H 0.174 0.826 30 H 0.145 0.855 31 H 0.124 0.876 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.106 0.894 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.258 0.742 38 H 0.038 0.962 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.911 5.250 -17.758 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.150 4.150 3 C -0.246 4.246 4 C -0.078 4.078 5 C -0.089 4.089 6 C 0.286 3.714 7 O -0.476 6.476 8 N -0.338 5.338 9 C -0.022 4.022 10 C -0.167 4.167 11 C -0.144 4.144 12 C 0.018 3.982 13 H 0.002 0.998 14 C -0.574 4.574 15 H 0.080 0.920 16 C -0.190 4.190 17 N -0.556 5.556 18 Si 0.781 3.219 19 H -0.199 1.199 20 H -0.216 1.216 21 H -0.186 1.186 22 C 0.003 3.997 23 O 0.011 5.989 24 N -0.113 5.113 25 H 0.101 0.899 26 H 0.128 0.872 27 H 0.098 0.902 28 H 0.215 0.785 29 H 0.191 0.809 30 H 0.163 0.837 31 H 0.142 0.858 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.125 0.875 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.572 3.646 -17.177 18.749 hybrid contribution 0.234 0.522 1.799 1.887 sum -6.338 4.168 -15.378 17.147 Atomic orbital electron populations 1.20323 0.83414 1.05216 1.04069 1.24296 1.00764 0.88657 1.01327 1.22775 0.90532 1.02206 1.09047 1.24196 0.98732 0.83310 1.01514 1.20371 0.91747 1.02900 0.93838 1.21117 0.80925 0.77590 0.91793 1.90746 1.55455 1.53050 1.48383 1.48500 1.21956 1.54563 1.08774 1.22160 0.90403 1.00409 0.89254 1.21938 0.96634 1.00930 0.97230 1.21522 0.98403 0.99928 0.94580 1.18904 0.91591 0.93802 0.93923 0.99793 1.21564 1.12520 1.31586 0.91756 0.91973 1.25894 0.95045 0.94763 1.03302 1.70096 1.20094 1.35392 1.29989 0.85583 0.79143 0.77726 0.79416 1.19928 1.21577 1.18582 1.21645 0.98897 0.97901 0.81264 1.84739 1.21875 1.23993 1.68316 1.73796 0.89706 1.25774 1.21993 0.89932 0.87168 0.90152 0.78451 0.80871 0.83741 0.85848 0.89564 0.93016 0.87535 0.92343 0.93362 0.93300 0.94407 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.47 71.24 0.75 -0.57 16 2 C 0.01 0.22 7.33 43.58 0.32 0.54 16 3 C -0.22 -5.69 11.06 22.40 0.25 -5.44 16 4 C -0.01 -0.39 5.98 25.04 0.15 -0.24 16 5 C -0.05 -1.08 4.61 29.10 0.13 -0.95 16 6 C 0.50 18.33 7.69 87.66 0.67 19.01 16 7 O -0.60 -29.95 15.45 -3.05 -0.05 -29.99 16 8 N -0.61 -21.99 2.97 -818.99 -2.43 -24.42 16 9 C 0.10 2.26 6.34 86.36 0.55 2.81 16 10 C -0.13 -3.35 6.08 30.67 0.19 -3.16 16 11 C -0.11 -3.91 5.11 30.62 0.16 -3.75 16 12 C 0.04 1.84 2.25 -11.48 -0.03 1.81 16 13 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 14 C -0.54 -29.44 8.57 25.60 0.22 -29.22 16 15 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 16 C 0.01 0.52 5.30 84.66 0.45 0.97 16 17 N -0.92 -56.61 11.39 21.45 0.24 -56.36 16 18 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 22 C 0.13 6.09 5.39 86.35 0.47 6.55 16 23 O 0.07 2.49 11.20 71.62 0.80 3.29 16 24 N -0.40 -13.69 12.07 -49.55 -0.60 -14.29 16 25 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.20 3.59 8.06 -2.91 -0.02 3.56 16 29 H 0.17 2.03 7.94 -2.39 -0.02 2.01 16 30 H 0.14 2.37 7.69 -2.39 -0.02 2.35 16 31 H 0.12 1.60 5.93 -2.38 -0.01 1.58 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 38 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.07 4.29 5.12 -2.39 -0.01 4.28 16 Total: -1.00 -82.18 322.34 5.31 -76.88 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.05 Total: 9.96 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 4.27 Total: -11.63 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -2.79 Total: -95.07 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: 0.75 Total: -26.70 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -82.18 5.31 -76.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597901411.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.410 kcal (2) G-P(sol) polarization free energy of solvation -82.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds