Wall clock time and date at job start Mon Mar 30 2020 23:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35901 * 117.00132 * 2 1 4 4 C 1.38807 * 120.01737 * 359.95263 * 3 2 1 5 5 C 1.38173 * 120.08158 * 180.02562 * 4 3 2 6 6 C 1.38171 * 120.12325 * 0.02562 * 5 4 3 7 7 C 1.38881 * 120.04169 * 0.02562 * 6 5 4 8 8 N 1.39941 * 120.04259 * 179.97438 * 7 6 5 9 9 C 1.34772 * 119.99716 * 325.25911 * 8 7 6 10 10 O 1.21585 * 120.00510 * 4.47933 * 9 8 7 11 11 N 1.34781 * 119.99622 * 184.47975 * 9 8 7 12 12 C 1.46494 * 120.00156 * 359.97438 * 11 9 8 13 13 C 1.46501 * 119.99627 * 179.97438 * 11 9 8 14 14 C 1.50697 * 109.47253 * 90.00299 * 13 11 9 15 15 H 1.08011 * 119.99735 * 359.97438 * 14 13 11 16 16 C 1.37878 * 120.00440 * 179.97438 * 14 13 11 17 17 N 1.31508 * 119.99509 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00116 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47307 * 60.00084 * 18 16 14 20 20 H 1.48508 * 109.47029 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47167 * 299.99778 * 18 16 14 22 22 C 1.38583 * 120.02142 * 180.02562 * 3 2 1 23 23 C 1.50696 * 120.06258 * 0.24725 * 22 3 2 24 24 H 1.09007 * 109.46797 * 59.99778 * 1 2 3 25 25 H 1.08994 * 109.47444 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47338 * 300.00701 * 1 2 3 27 27 H 1.07997 * 119.96005 * 0.04935 * 4 3 2 28 28 H 1.08004 * 119.93803 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.97793 * 179.97438 * 6 5 4 30 30 H 0.97000 * 119.99862 * 145.25827 * 8 7 6 31 31 H 1.09006 * 109.47344 * 89.99939 * 12 11 9 32 32 H 1.09002 * 109.47525 * 210.00089 * 12 11 9 33 33 H 1.09005 * 109.47390 * 330.00326 * 12 11 9 34 34 H 1.09001 * 109.47038 * 210.00026 * 13 11 9 35 35 H 1.08996 * 109.47435 * 329.99983 * 13 11 9 36 36 H 0.97001 * 120.00149 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.47395 * 269.73128 * 23 22 3 38 38 H 1.09002 * 109.46854 * 29.72859 * 23 22 3 39 39 H 1.09000 * 109.47213 * 149.72813 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2904 2.3753 -0.0010 5 6 1.9163 3.6071 -0.0015 6 6 3.2959 3.6839 -0.0016 7 6 4.0569 2.5221 -0.0017 8 7 5.4542 2.5999 -0.0023 9 6 6.0733 3.5948 -0.6679 10 8 5.4183 4.4705 -1.1994 11 7 7.4188 3.6191 -0.7445 12 6 8.2080 2.5644 -0.1037 13 6 8.0918 4.7003 -1.4685 14 6 8.3768 5.8376 -0.5217 15 1 8.0853 5.7626 0.5156 16 6 9.0096 6.9738 -0.9796 17 7 9.3641 7.0652 -2.2427 18 14 9.3622 8.3837 0.1939 19 1 10.2366 7.9049 1.2945 20 1 10.0446 9.4797 -0.5400 21 1 8.0851 8.8878 0.7599 22 6 3.4299 1.2839 -0.0005 23 6 4.2525 0.0212 -0.0067 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.2119 2.3183 -0.0010 28 1 1.3261 4.5116 -0.0027 29 1 3.7827 4.6479 -0.0025 30 1 5.9770 1.9377 0.4763 31 1 8.3647 1.7483 -0.8091 32 1 9.1724 2.9684 0.2044 33 1 7.6744 2.1914 0.7706 34 1 9.0289 4.3306 -1.8847 35 1 7.4494 5.0519 -2.2758 36 1 9.8097 7.8643 -2.5648 37 1 4.4555 -0.2852 1.0194 38 1 3.7027 -0.7680 -0.5196 39 1 5.1941 0.2036 -0.5246 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599858745.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:50 Heat of formation + Delta-G solvation = -29.574124 kcal Electronic energy + Delta-G solvation = -21557.314428 eV Core-core repulsion = 18272.987745 eV Total energy + Delta-G solvation = -3284.326683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.57831 -39.45226 -37.36686 -34.90401 -34.31234 -32.62270 -32.19407 -29.11171 -27.73503 -27.65481 -26.49541 -25.72209 -23.28895 -21.87372 -21.19374 -19.51185 -18.21954 -17.43937 -16.55164 -16.09363 -15.89033 -15.83698 -15.41601 -14.79792 -14.65709 -14.07739 -13.74321 -13.55292 -13.22021 -13.05190 -12.75565 -12.45419 -12.18675 -12.14766 -12.06599 -11.88247 -11.42434 -11.19476 -11.18209 -10.92342 -10.84650 -10.56392 -10.15903 -9.90777 -9.66201 -9.21630 -8.43062 -8.12604 -7.89392 -7.56562 -6.03932 -4.08868 1.42952 1.63479 2.97707 3.32413 3.36942 3.39158 3.46797 3.70355 4.07471 4.39969 4.54195 4.82102 4.93467 5.00056 5.03675 5.24663 5.28668 5.29973 5.47426 5.50170 5.57660 5.68003 5.71734 5.83454 5.86562 6.10590 6.23588 6.37915 6.46686 6.53681 6.77830 6.85334 7.15994 7.34778 7.45185 7.49560 7.66265 7.93718 8.22850 8.56222 8.91613 9.22519 9.56468 11.03957 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031430 B = 0.003910 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.646583 B = 7160.223795 C = 7695.581034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.138 3.862 4 C -0.230 4.230 5 C -0.069 4.069 6 C -0.151 4.151 7 C 0.215 3.785 8 N -0.692 5.692 9 C 0.698 3.302 10 O -0.565 6.565 11 N -0.612 5.612 12 C 0.083 3.917 13 C 0.260 3.740 14 C -0.528 4.528 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.895 5.895 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.157 4.157 23 C -0.100 4.100 24 H 0.054 0.946 25 H 0.096 0.904 26 H 0.053 0.947 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.148 0.852 30 H 0.402 0.598 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.035 0.965 35 H 0.046 0.954 36 H 0.264 0.736 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.142 -15.125 6.105 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.092 3.908 4 C -0.250 4.250 5 C -0.088 4.088 6 C -0.172 4.172 7 C 0.118 3.882 8 N -0.342 5.342 9 C 0.400 3.600 10 O -0.441 6.441 11 N -0.347 5.347 12 C -0.061 4.061 13 C 0.141 3.859 14 C -0.567 4.567 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.160 4.160 23 C -0.157 4.157 24 H 0.072 0.928 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.141 0.859 28 H 0.143 0.857 29 H 0.165 0.835 30 H 0.239 0.761 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.282 -14.508 5.521 20.429 hybrid contribution 0.263 0.664 0.867 1.123 sum -13.019 -13.844 6.388 20.048 Atomic orbital electron populations 1.23000 0.78776 1.03474 1.01326 1.86012 1.20951 1.27034 1.89030 1.18369 0.90998 0.84002 0.97385 1.21081 0.99535 0.92338 1.12015 1.20803 0.94164 0.96818 0.96974 1.21408 0.93338 0.99187 1.03256 1.17076 0.82324 0.92262 0.96518 1.42959 1.04431 1.31844 1.54969 1.15910 0.82792 0.81612 0.79733 1.90888 1.63921 1.38049 1.51245 1.47509 1.02859 1.28153 1.56167 1.21604 0.97594 0.90851 0.96067 1.19254 0.91959 0.82701 0.92013 1.21422 1.38218 1.00973 0.96118 0.92503 1.24925 0.95597 0.98272 0.95256 1.69918 1.40619 1.28870 1.13978 0.86550 0.78457 0.81632 0.80717 1.20278 1.21178 1.20176 1.18796 0.90993 0.94575 1.11671 1.20479 0.98922 0.94481 1.01803 0.92772 0.88586 0.92795 0.85899 0.85713 0.83485 0.76061 0.93565 0.90189 0.93208 0.94723 0.93628 0.92629 0.91788 0.91097 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.75 9.54 -19.43 -0.19 -3.93 16 3 C 0.14 1.88 6.66 -39.24 -0.26 1.62 16 4 C -0.23 -2.95 9.04 -39.39 -0.36 -3.30 16 5 C -0.07 -0.98 10.03 -39.63 -0.40 -1.38 16 6 C -0.15 -2.63 8.70 -39.37 -0.34 -2.98 16 7 C 0.22 3.59 6.28 -83.71 -0.53 3.07 16 8 N -0.69 -11.68 4.62 -14.24 -0.07 -11.74 16 9 C 0.70 15.08 8.12 -86.92 -0.71 14.37 16 10 O -0.57 -14.50 13.33 5.29 0.07 -14.43 16 11 N -0.61 -13.07 2.86 -188.74 -0.54 -13.60 16 12 C 0.08 1.29 10.24 59.84 0.61 1.90 16 13 C 0.26 6.80 5.16 -5.19 -0.03 6.77 16 14 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16 15 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 18 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.16 -2.27 5.91 -104.29 -0.62 -2.88 16 23 C -0.10 -1.17 9.25 36.00 0.33 -0.84 16 24 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 25 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 27 H 0.12 1.23 6.29 -52.49 -0.33 0.89 16 28 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 29 H 0.15 2.96 6.19 -52.49 -0.33 2.63 16 30 H 0.40 5.46 5.56 -40.82 -0.23 5.23 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 33 H 0.05 0.62 6.30 -51.93 -0.33 0.29 16 34 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 35 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.80 7.53 -51.93 -0.39 0.41 16 39 H 0.06 0.71 7.18 -51.93 -0.37 0.34 16 LS Contribution 325.07 15.07 4.90 4.90 Total: -1.00 -33.84 325.07 -7.05 -40.89 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.23 Total: 2.98 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -1.72 Total: 3.94 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.13 Total: -51.19 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.11 Total: -18.36 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.84 -7.05 -40.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599858745.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.312 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds