Wall clock time and date at job start Mon Mar 30 2020 23:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35901 * 117.00132 * 2 1 4 4 C 1.38807 * 120.01737 * 359.95263 * 3 2 1 5 5 C 1.38173 * 120.08158 * 180.02562 * 4 3 2 6 6 C 1.38171 * 120.12325 * 0.02562 * 5 4 3 7 7 C 1.38881 * 120.04169 * 0.02562 * 6 5 4 8 8 N 1.39941 * 120.04259 * 179.97438 * 7 6 5 9 9 C 1.34772 * 119.99716 * 325.25911 * 8 7 6 10 10 O 1.21585 * 120.00510 * 4.47933 * 9 8 7 11 11 N 1.34781 * 119.99622 * 184.47975 * 9 8 7 12 12 C 1.46494 * 120.00156 * 359.97438 * 11 9 8 13 13 C 1.46501 * 119.99627 * 179.97438 * 11 9 8 14 14 C 1.50697 * 109.47253 * 90.00299 * 13 11 9 15 15 H 1.08011 * 119.99735 * 359.97438 * 14 13 11 16 16 C 1.37878 * 120.00440 * 179.97438 * 14 13 11 17 17 N 1.31508 * 119.99509 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00116 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47307 * 60.00084 * 18 16 14 20 20 H 1.48508 * 109.47029 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47167 * 299.99778 * 18 16 14 22 22 C 1.38583 * 120.02142 * 180.02562 * 3 2 1 23 23 C 1.50696 * 120.06258 * 0.24725 * 22 3 2 24 24 H 1.09007 * 109.46797 * 59.99778 * 1 2 3 25 25 H 1.08994 * 109.47444 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47338 * 300.00701 * 1 2 3 27 27 H 1.07997 * 119.96005 * 0.04935 * 4 3 2 28 28 H 1.08004 * 119.93803 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.97793 * 179.97438 * 6 5 4 30 30 H 0.97000 * 119.99862 * 145.25827 * 8 7 6 31 31 H 1.09006 * 109.47344 * 89.99939 * 12 11 9 32 32 H 1.09002 * 109.47525 * 210.00089 * 12 11 9 33 33 H 1.09005 * 109.47390 * 330.00326 * 12 11 9 34 34 H 1.09001 * 109.47038 * 210.00026 * 13 11 9 35 35 H 1.08996 * 109.47435 * 329.99983 * 13 11 9 36 36 H 0.97001 * 120.00149 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.47395 * 269.73128 * 23 22 3 38 38 H 1.09002 * 109.46854 * 29.72859 * 23 22 3 39 39 H 1.09000 * 109.47213 * 149.72813 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2904 2.3753 -0.0010 5 6 1.9163 3.6071 -0.0015 6 6 3.2959 3.6839 -0.0016 7 6 4.0569 2.5221 -0.0017 8 7 5.4542 2.5999 -0.0023 9 6 6.0733 3.5948 -0.6679 10 8 5.4183 4.4705 -1.1994 11 7 7.4188 3.6191 -0.7445 12 6 8.2080 2.5644 -0.1037 13 6 8.0918 4.7003 -1.4685 14 6 8.3768 5.8376 -0.5217 15 1 8.0853 5.7626 0.5156 16 6 9.0096 6.9738 -0.9796 17 7 9.3641 7.0652 -2.2427 18 14 9.3622 8.3837 0.1939 19 1 10.2366 7.9049 1.2945 20 1 10.0446 9.4797 -0.5400 21 1 8.0851 8.8878 0.7599 22 6 3.4299 1.2839 -0.0005 23 6 4.2525 0.0212 -0.0067 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.2119 2.3183 -0.0010 28 1 1.3261 4.5116 -0.0027 29 1 3.7827 4.6479 -0.0025 30 1 5.9770 1.9377 0.4763 31 1 8.3647 1.7483 -0.8091 32 1 9.1724 2.9684 0.2044 33 1 7.6744 2.1914 0.7706 34 1 9.0289 4.3306 -1.8847 35 1 7.4494 5.0519 -2.2758 36 1 9.8097 7.8643 -2.5648 37 1 4.4555 -0.2852 1.0194 38 1 3.7027 -0.7680 -0.5196 39 1 5.1941 0.2036 -0.5246 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599858745.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:49 Heat of formation + Delta-G solvation = -51.682784 kcal Electronic energy + Delta-G solvation = -21558.273131 eV Core-core repulsion = 18272.987745 eV Total energy + Delta-G solvation = -3285.285386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.88261 -40.71574 -38.53899 -36.64689 -35.72953 -34.61079 -33.36722 -30.48987 -29.41415 -28.43268 -27.58629 -27.23242 -25.14685 -23.17251 -22.37092 -20.99492 -19.47547 -18.84168 -18.67646 -17.31612 -17.15909 -16.76595 -16.59209 -16.55809 -16.20525 -15.66247 -14.91468 -14.84823 -14.38869 -14.31686 -14.22833 -13.89799 -13.57836 -13.39556 -13.15891 -13.02283 -12.90896 -12.80618 -12.57591 -12.47362 -12.17697 -12.15717 -11.80489 -11.74289 -11.24742 -10.90441 -10.63301 -9.57216 -9.18064 -8.92985 -8.21173 -6.36305 0.28240 0.48273 1.37190 1.41594 1.48575 1.63761 2.13659 2.39092 2.46252 2.82286 3.05653 3.09888 3.84891 4.00854 4.15009 4.25264 4.32603 4.45129 4.47222 4.53289 4.61362 4.65761 4.80097 4.81471 4.82312 4.83259 4.96027 5.18570 5.28947 5.31006 5.32797 5.41883 5.53690 5.59422 5.78539 5.93918 6.05913 6.06376 6.47490 6.71974 7.01867 7.30546 7.60140 8.85236 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031430 B = 0.003910 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.646583 B = 7160.223795 C = 7695.581034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.138 3.862 4 C -0.219 4.219 5 C -0.071 4.071 6 C -0.182 4.182 7 C 0.189 3.811 8 N -0.672 5.672 9 C 0.693 3.307 10 O -0.616 6.616 11 N -0.619 5.619 12 C 0.077 3.923 13 C 0.276 3.724 14 C -0.545 4.545 15 H 0.052 0.948 16 C 0.009 3.991 17 N -0.928 5.928 18 Si 0.967 3.033 19 H -0.260 1.260 20 H -0.278 1.278 21 H -0.279 1.279 22 C -0.158 4.158 23 C -0.098 4.098 24 H 0.061 0.939 25 H 0.121 0.879 26 H 0.066 0.934 27 H 0.157 0.843 28 H 0.143 0.857 29 H 0.109 0.891 30 H 0.418 0.582 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.031 0.969 35 H -0.001 1.001 36 H 0.268 0.732 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.319 -17.051 7.747 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.237 6.237 3 C 0.092 3.908 4 C -0.238 4.238 5 C -0.090 4.090 6 C -0.203 4.203 7 C 0.093 3.907 8 N -0.323 5.323 9 C 0.395 3.605 10 O -0.496 6.496 11 N -0.354 5.354 12 C -0.065 4.065 13 C 0.155 3.845 14 C -0.583 4.583 15 H 0.070 0.930 16 C -0.190 4.190 17 N -0.567 5.567 18 Si 0.792 3.208 19 H -0.184 1.184 20 H -0.203 1.203 21 H -0.205 1.205 22 C -0.162 4.162 23 C -0.154 4.154 24 H 0.080 0.920 25 H 0.139 0.861 26 H 0.085 0.915 27 H 0.175 0.825 28 H 0.161 0.839 29 H 0.127 0.873 30 H 0.259 0.741 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.049 0.951 35 H 0.017 0.983 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.465 -16.518 7.207 23.109 hybrid contribution 0.464 1.137 0.342 1.274 sum -14.002 -15.381 7.550 22.128 Atomic orbital electron populations 1.23365 0.76429 1.05603 1.02284 1.86016 1.23307 1.25840 1.88535 1.18513 0.90966 0.85040 0.96327 1.21417 1.01232 0.91270 1.09907 1.21005 0.92995 0.98549 0.96440 1.21270 0.94988 0.98019 1.06031 1.17233 0.81860 0.93085 0.98495 1.42550 1.04841 1.30767 1.54122 1.16081 0.82691 0.81983 0.79734 1.90852 1.65089 1.40280 1.53393 1.47371 1.03311 1.28415 1.56271 1.21917 0.97092 0.89806 0.97716 1.18710 0.90866 0.83911 0.91035 1.21692 1.38341 1.02148 0.96159 0.92964 1.25833 0.95242 1.00954 0.96975 1.70037 1.41173 1.29781 1.15747 0.85475 0.78272 0.78230 0.78860 1.18419 1.20269 1.20515 1.19036 0.92005 0.94525 1.10640 1.20533 0.98551 0.93190 1.03167 0.92000 0.86080 0.91542 0.82516 0.83908 0.87343 0.74118 0.90813 0.90533 0.89788 0.95100 0.98251 0.92342 0.89803 0.90477 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -6.59 9.54 -92.44 -0.88 -7.47 16 3 C 0.14 3.42 6.66 22.49 0.15 3.57 16 4 C -0.22 -5.11 9.04 22.39 0.20 -4.90 16 5 C -0.07 -2.01 10.03 22.24 0.22 -1.79 16 6 C -0.18 -6.61 8.70 22.41 0.19 -6.41 16 7 C 0.19 6.36 6.28 38.13 0.24 6.60 16 8 N -0.67 -22.75 4.62 -317.23 -1.47 -24.22 16 9 C 0.69 31.09 8.12 179.05 1.45 32.54 16 10 O -0.62 -33.76 13.33 -3.98 -0.05 -33.81 16 11 N -0.62 -27.08 2.86 -869.32 -2.48 -29.56 16 12 C 0.08 2.29 10.24 127.77 1.31 3.60 16 13 C 0.28 15.13 5.16 85.63 0.44 15.57 16 14 C -0.54 -31.77 9.39 25.60 0.24 -31.53 16 15 H 0.05 3.02 7.81 -2.90 -0.02 3.00 16 16 C 0.01 0.53 5.46 84.66 0.46 0.99 16 17 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 18 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 19 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 22 C -0.16 -4.35 5.91 -19.65 -0.12 -4.47 16 23 C -0.10 -2.05 9.25 71.23 0.66 -1.39 16 24 H 0.06 0.64 7.66 -2.38 -0.02 0.62 16 25 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 27 H 0.16 2.52 6.29 -2.91 -0.02 2.50 16 28 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 29 H 0.11 4.76 6.19 -2.91 -0.02 4.74 16 30 H 0.42 10.79 5.56 -92.71 -0.52 10.27 16 31 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 33 H 0.08 1.90 6.30 -2.38 -0.02 1.89 16 34 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16 35 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 36 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 1.53 7.53 -2.39 -0.02 1.51 16 39 H 0.06 1.31 7.18 -2.39 -0.02 1.29 16 Total: -1.00 -77.51 325.07 4.55 -72.96 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.55 Total: 17.27 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 6.57 Total: 13.69 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -3.66 Total: -109.97 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -0.93 Total: -41.28 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -77.51 4.55 -72.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599858745.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.281 kcal (2) G-P(sol) polarization free energy of solvation -77.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds