Wall clock time and date at job start Mon Mar 30 2020 23:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 116.99514 * 2 1 4 4 C 1.38812 * 120.02121 * 359.97438 * 3 2 1 5 5 C 1.38163 * 120.08178 * 180.02562 * 4 3 2 6 6 C 1.38170 * 120.12830 * 359.72500 * 5 4 3 7 7 C 1.38884 * 120.03431 * 0.54937 * 6 5 4 8 8 N 1.39946 * 120.04104 * 179.72431 * 7 6 5 9 9 C 1.34777 * 119.99832 * 334.42564 * 8 7 6 10 10 O 1.21589 * 119.99979 * 3.98177 * 9 8 7 11 11 N 1.34776 * 120.00340 * 183.97093 * 9 8 7 12 12 C 1.46495 * 120.00492 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.46943 * 35.00562 * 12 11 9 14 14 C 1.52995 * 109.47155 * 275.00338 * 12 11 9 15 15 C 1.50696 * 109.47200 * 155.00398 * 12 11 9 16 16 H 1.07995 * 120.00181 * 35.00327 * 15 12 11 17 17 C 1.37881 * 119.99987 * 215.00176 * 15 12 11 18 18 N 1.31516 * 120.00200 * 184.97064 * 17 15 12 19 19 Si 1.86799 * 120.00080 * 4.97291 * 17 15 12 20 20 H 1.48504 * 109.47341 * 84.94114 * 19 17 15 21 21 H 1.48498 * 109.47362 * 204.94042 * 19 17 15 22 22 H 1.48508 * 109.46942 * 324.94151 * 19 17 15 23 23 C 1.38587 * 120.01937 * 179.97438 * 3 2 1 24 24 C 1.50697 * 120.06107 * 359.97438 * 23 3 2 25 25 H 1.09000 * 109.47463 * 299.99917 * 1 2 3 26 26 H 1.09001 * 109.47103 * 60.00643 * 1 2 3 27 27 H 1.09006 * 109.46624 * 179.97438 * 1 2 3 28 28 H 1.07994 * 119.95654 * 0.04757 * 4 3 2 29 29 H 1.08000 * 119.93845 * 180.02562 * 5 4 3 30 30 H 1.07996 * 119.98387 * 180.29958 * 6 5 4 31 31 H 0.96997 * 120.00218 * 154.43230 * 8 7 6 32 32 H 0.97003 * 119.99414 * 0.02562 * 11 9 8 33 33 H 1.08995 * 109.47767 * 295.01160 * 14 12 11 34 34 H 1.09006 * 109.47117 * 175.00982 * 14 12 11 35 35 H 1.09000 * 109.47046 * 55.01610 * 14 12 11 36 36 H 0.97000 * 120.00142 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.47060 * 269.97496 * 24 23 3 38 38 H 1.08998 * 109.47207 * 29.97846 * 24 23 3 39 39 H 1.09008 * 109.46828 * 149.97328 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3753 -0.0005 5 6 1.9160 3.6071 -0.0011 6 6 3.2955 3.6841 0.0047 7 6 4.0566 2.5224 -0.0005 8 7 5.4539 2.6002 -0.0006 9 6 6.0680 3.6911 -0.4999 10 8 5.4086 4.6378 -0.8837 11 7 7.4131 3.7328 -0.5736 12 6 8.0807 4.9187 -1.1158 13 1 7.5200 5.8108 -0.8366 14 6 8.1467 4.8143 -2.6408 15 6 9.4775 5.0082 -0.5575 16 1 10.0421 4.1073 -0.3680 17 6 10.0349 6.2403 -0.2887 18 7 11.2868 6.3239 0.1055 19 14 9.0119 7.7910 -0.4845 20 1 8.2327 8.0300 0.7569 21 1 9.9089 8.9474 -0.7362 22 1 8.0807 7.6283 -1.6298 23 6 3.4298 1.2841 0.0005 24 6 4.2524 0.0214 0.0017 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2117 2.3183 -0.0002 29 1 1.3258 4.5116 -0.0011 30 1 3.7823 4.6481 0.0091 31 1 5.9804 1.8691 0.3587 32 1 7.9392 2.9774 -0.2676 33 1 8.7810 3.9731 -2.9204 34 1 8.5627 5.7349 -3.0503 35 1 7.1434 4.6607 -3.0382 36 1 11.6788 7.1907 0.2949 37 1 4.4507 -0.2821 1.0296 38 1 3.7052 -0.7692 -0.5115 39 1 5.1965 0.2024 -0.5123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599860251.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:59 Heat of formation + Delta-G solvation = -40.277005 kcal Electronic energy + Delta-G solvation = -21432.381229 eV Core-core repulsion = 18147.590434 eV Total energy + Delta-G solvation = -3284.790795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.66201 -39.52019 -37.44601 -35.08843 -34.34651 -32.47451 -32.27199 -30.07595 -28.47484 -27.74281 -26.48939 -25.32917 -22.84150 -21.58819 -20.78634 -19.93374 -18.51276 -18.18764 -16.70922 -16.08143 -16.01400 -15.88757 -15.45251 -14.98182 -14.61351 -14.21724 -13.74224 -13.53649 -13.31181 -13.24365 -12.57256 -12.51395 -12.46300 -12.19763 -12.14334 -11.66504 -11.55085 -11.23738 -11.11004 -10.90563 -10.81412 -10.58489 -10.10489 -9.90202 -9.36093 -9.22309 -8.73865 -8.29041 -8.12045 -7.71328 -6.26547 -4.30673 1.37903 1.58237 2.87040 3.25174 3.33207 3.39970 3.40538 3.56069 3.99180 4.30317 4.69792 4.77740 4.89499 4.96077 4.98197 5.16106 5.20275 5.24551 5.45416 5.52102 5.63710 5.64763 5.81345 6.17611 6.27100 6.34534 6.40105 6.48918 6.50995 6.66547 6.72156 6.86745 7.07984 7.11621 7.31722 7.39889 7.46929 7.54510 8.21326 8.61699 8.75150 9.07193 9.35378 10.84985 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035929 B = 0.003798 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.122988 B = 7371.202490 C = 7801.914419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.141 3.859 4 C -0.234 4.234 5 C -0.067 4.067 6 C -0.168 4.168 7 C 0.217 3.783 8 N -0.687 5.687 9 C 0.693 3.307 10 O -0.582 6.582 11 N -0.713 5.713 12 C 0.247 3.753 13 H 0.051 0.949 14 C -0.148 4.148 15 C -0.531 4.531 16 H 0.079 0.921 17 C 0.082 3.918 18 N -0.888 5.888 19 Si 0.875 3.125 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.259 1.259 23 C -0.162 4.162 24 C -0.101 4.101 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.160 0.840 31 H 0.405 0.595 32 H 0.391 0.609 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.030 0.970 36 H 0.268 0.732 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.497 -11.699 0.727 21.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.096 3.904 4 C -0.254 4.254 5 C -0.086 4.086 6 C -0.188 4.188 7 C 0.119 3.881 8 N -0.333 5.333 9 C 0.393 3.607 10 O -0.461 6.461 11 N -0.364 5.364 12 C 0.145 3.855 13 H 0.069 0.931 14 C -0.208 4.208 15 C -0.569 4.569 16 H 0.097 0.903 17 C -0.123 4.123 18 N -0.524 5.524 19 Si 0.702 3.298 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.184 1.184 23 C -0.166 4.166 24 C -0.158 4.158 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.178 0.822 31 H 0.241 0.759 32 H 0.224 0.776 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.681 -10.838 0.390 21.601 hybrid contribution -0.188 0.280 0.265 0.429 sum -18.870 -10.558 0.655 21.633 Atomic orbital electron populations 1.23004 0.78732 1.03516 1.01319 1.86016 1.20986 1.27016 1.88971 1.18359 0.90982 0.84012 0.97089 1.21084 0.99539 0.92389 1.12407 1.20829 0.94261 0.96737 0.96784 1.21748 0.93320 0.99796 1.03971 1.17137 0.82090 0.92547 0.96301 1.42841 1.04660 1.21547 1.64214 1.16239 0.83372 0.82287 0.78770 1.90780 1.63979 1.36046 1.55292 1.46045 1.02771 1.22061 1.65553 1.19069 0.92564 0.83616 0.90298 0.93083 1.22237 0.98828 1.01202 0.98487 1.21003 0.96703 0.94909 1.44277 0.90294 1.24942 0.94850 0.99013 0.93505 1.69878 1.12456 1.25579 1.44455 0.86880 0.80426 0.82592 0.79951 1.19808 1.21168 1.18372 1.18712 0.91058 0.94416 1.12395 1.20484 0.98803 0.94525 1.01966 0.92772 0.92785 0.88549 0.85952 0.85803 0.82239 0.75932 0.77561 0.93429 0.92816 0.95124 0.92165 0.91647 0.91045 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.61 9.54 -19.43 -0.19 -3.80 16 3 C 0.14 1.84 6.66 -39.24 -0.26 1.58 16 4 C -0.23 -2.87 9.04 -39.40 -0.36 -3.22 16 5 C -0.07 -0.91 10.03 -39.63 -0.40 -1.30 16 6 C -0.17 -2.74 8.79 -39.37 -0.35 -3.09 16 7 C 0.22 3.39 6.43 -83.71 -0.54 2.85 16 8 N -0.69 -10.61 4.97 -14.24 -0.07 -10.68 16 9 C 0.69 13.49 8.42 -86.92 -0.73 12.76 16 10 O -0.58 -13.19 12.92 5.29 0.07 -13.12 16 11 N -0.71 -14.13 5.07 -59.82 -0.30 -14.43 16 12 C 0.25 5.80 2.22 -69.09 -0.15 5.65 16 13 H 0.05 1.31 4.72 -51.93 -0.25 1.06 16 14 C -0.15 -3.24 9.47 37.16 0.35 -2.89 16 15 C -0.53 -14.04 9.05 -34.44 -0.31 -14.35 16 16 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 17 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 18 N -0.89 -25.85 13.96 55.43 0.77 -25.08 16 19 Si 0.88 21.35 26.99 -169.99 -4.59 16.76 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.26 -6.23 6.81 56.52 0.39 -5.85 16 23 C -0.16 -2.22 5.91 -104.29 -0.62 -2.84 16 24 C -0.10 -1.12 9.23 36.00 0.33 -0.79 16 25 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 26 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.12 1.16 6.29 -52.49 -0.33 0.83 16 29 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 30 H 0.16 2.99 5.51 -52.49 -0.29 2.70 16 31 H 0.41 4.97 7.43 -40.82 -0.30 4.66 16 32 H 0.39 6.71 8.61 -40.82 -0.35 6.36 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.77 7.53 -51.93 -0.39 0.38 16 39 H 0.06 0.65 6.99 -51.92 -0.36 0.28 16 LS Contribution 322.54 15.07 4.86 4.86 Total: -1.00 -31.81 322.54 -6.76 -38.57 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.18 Total: 9.20 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -2.13 Total: -2.28 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 0.40 Total: -50.19 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.12 Total: -16.92 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.59 Total: 16.76 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.81 -6.76 -38.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599860251.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.706 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds