Wall clock time and date at job start Mon Mar 30 2020 23:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 116.99514 * 2 1 4 4 C 1.38812 * 120.02121 * 359.97438 * 3 2 1 5 5 C 1.38163 * 120.08178 * 180.02562 * 4 3 2 6 6 C 1.38170 * 120.12830 * 359.72500 * 5 4 3 7 7 C 1.38884 * 120.03431 * 0.54937 * 6 5 4 8 8 N 1.39946 * 120.04104 * 179.72431 * 7 6 5 9 9 C 1.34777 * 119.99832 * 334.42564 * 8 7 6 10 10 O 1.21589 * 119.99979 * 3.98177 * 9 8 7 11 11 N 1.34776 * 120.00340 * 183.97093 * 9 8 7 12 12 C 1.46495 * 120.00492 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.46943 * 35.00562 * 12 11 9 14 14 C 1.52995 * 109.47155 * 275.00338 * 12 11 9 15 15 C 1.50696 * 109.47200 * 155.00398 * 12 11 9 16 16 H 1.07995 * 120.00181 * 35.00327 * 15 12 11 17 17 C 1.37881 * 119.99987 * 215.00176 * 15 12 11 18 18 N 1.31516 * 120.00200 * 184.97064 * 17 15 12 19 19 Si 1.86799 * 120.00080 * 4.97291 * 17 15 12 20 20 H 1.48504 * 109.47341 * 84.94114 * 19 17 15 21 21 H 1.48498 * 109.47362 * 204.94042 * 19 17 15 22 22 H 1.48508 * 109.46942 * 324.94151 * 19 17 15 23 23 C 1.38587 * 120.01937 * 179.97438 * 3 2 1 24 24 C 1.50697 * 120.06107 * 359.97438 * 23 3 2 25 25 H 1.09000 * 109.47463 * 299.99917 * 1 2 3 26 26 H 1.09001 * 109.47103 * 60.00643 * 1 2 3 27 27 H 1.09006 * 109.46624 * 179.97438 * 1 2 3 28 28 H 1.07994 * 119.95654 * 0.04757 * 4 3 2 29 29 H 1.08000 * 119.93845 * 180.02562 * 5 4 3 30 30 H 1.07996 * 119.98387 * 180.29958 * 6 5 4 31 31 H 0.96997 * 120.00218 * 154.43230 * 8 7 6 32 32 H 0.97003 * 119.99414 * 0.02562 * 11 9 8 33 33 H 1.08995 * 109.47767 * 295.01160 * 14 12 11 34 34 H 1.09006 * 109.47117 * 175.00982 * 14 12 11 35 35 H 1.09000 * 109.47046 * 55.01610 * 14 12 11 36 36 H 0.97000 * 120.00142 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.47060 * 269.97496 * 24 23 3 38 38 H 1.08998 * 109.47207 * 29.97846 * 24 23 3 39 39 H 1.09008 * 109.46828 * 149.97328 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3753 -0.0005 5 6 1.9160 3.6071 -0.0011 6 6 3.2955 3.6841 0.0047 7 6 4.0566 2.5224 -0.0005 8 7 5.4539 2.6002 -0.0006 9 6 6.0680 3.6911 -0.4999 10 8 5.4086 4.6378 -0.8837 11 7 7.4131 3.7328 -0.5736 12 6 8.0807 4.9187 -1.1158 13 1 7.5200 5.8108 -0.8366 14 6 8.1467 4.8143 -2.6408 15 6 9.4775 5.0082 -0.5575 16 1 10.0421 4.1073 -0.3680 17 6 10.0349 6.2403 -0.2887 18 7 11.2868 6.3239 0.1055 19 14 9.0119 7.7910 -0.4845 20 1 8.2327 8.0300 0.7569 21 1 9.9089 8.9474 -0.7362 22 1 8.0807 7.6283 -1.6298 23 6 3.4298 1.2841 0.0005 24 6 4.2524 0.0214 0.0017 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2117 2.3183 -0.0002 29 1 1.3258 4.5116 -0.0011 30 1 3.7823 4.6481 0.0091 31 1 5.9804 1.8691 0.3587 32 1 7.9392 2.9774 -0.2676 33 1 8.7810 3.9731 -2.9204 34 1 8.5627 5.7349 -3.0503 35 1 7.1434 4.6607 -3.0382 36 1 11.6788 7.1907 0.2949 37 1 4.4507 -0.2821 1.0296 38 1 3.7052 -0.7692 -0.5115 39 1 5.1965 0.2024 -0.5123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599860251.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:58 Heat of formation + Delta-G solvation = -61.929345 kcal Electronic energy + Delta-G solvation = -21433.320145 eV Core-core repulsion = 18147.590434 eV Total energy + Delta-G solvation = -3285.729711 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.88291 -40.70330 -38.57882 -36.77448 -35.66650 -34.38874 -33.39617 -31.68988 -29.70288 -28.44143 -27.44736 -27.31682 -24.17465 -22.76219 -22.10252 -21.58688 -20.08208 -19.24903 -18.51348 -17.44583 -17.06073 -16.75627 -16.62343 -16.49659 -16.06142 -15.81624 -15.08706 -14.69384 -14.54130 -14.41384 -14.32805 -14.21301 -13.51532 -13.40798 -13.04922 -13.00240 -12.92431 -12.77278 -12.59126 -12.40181 -12.19429 -11.87367 -11.79361 -11.33633 -11.22569 -10.89343 -10.81503 -9.92228 -9.16946 -8.88942 -8.39387 -6.45933 0.30786 0.50454 1.30100 1.35317 1.45878 1.61381 2.11050 2.27483 2.47018 2.84673 2.97130 3.39295 3.86049 4.01741 4.16814 4.31593 4.42193 4.46183 4.50265 4.54330 4.62553 4.73376 4.79787 4.80944 4.83222 4.83455 5.06241 5.24621 5.29506 5.31789 5.35382 5.43512 5.46909 5.58338 5.75286 5.94861 5.98123 6.27651 6.48413 6.60223 7.11871 7.21789 7.56871 8.75409 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035929 B = 0.003798 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.122988 B = 7371.202490 C = 7801.914419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.325 6.325 3 C 0.138 3.862 4 C -0.225 4.225 5 C -0.069 4.069 6 C -0.196 4.196 7 C 0.194 3.806 8 N -0.670 5.670 9 C 0.694 3.306 10 O -0.615 6.615 11 N -0.712 5.712 12 C 0.252 3.748 13 H 0.032 0.968 14 C -0.142 4.142 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.035 3.965 18 N -0.929 5.929 19 Si 0.926 3.074 20 H -0.275 1.275 21 H -0.277 1.277 22 H -0.255 1.255 23 C -0.165 4.165 24 C -0.099 4.099 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.120 0.880 28 H 0.154 0.846 29 H 0.143 0.857 30 H 0.130 0.870 31 H 0.420 0.580 32 H 0.404 0.596 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.035 0.965 36 H 0.271 0.729 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.940 -13.106 0.575 24.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.239 6.239 3 C 0.092 3.908 4 C -0.245 4.245 5 C -0.088 4.088 6 C -0.217 4.217 7 C 0.097 3.903 8 N -0.318 5.318 9 C 0.395 3.605 10 O -0.496 6.496 11 N -0.364 5.364 12 C 0.148 3.852 13 H 0.050 0.950 14 C -0.201 4.201 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.166 4.166 18 N -0.567 5.567 19 Si 0.751 3.249 20 H -0.201 1.201 21 H -0.203 1.203 22 H -0.179 1.179 23 C -0.169 4.169 24 C -0.156 4.156 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.138 0.862 28 H 0.172 0.828 29 H 0.161 0.839 30 H 0.147 0.853 31 H 0.259 0.741 32 H 0.240 0.760 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.153 -12.307 0.254 24.474 hybrid contribution 0.403 0.552 0.339 0.763 sum -20.750 -11.755 0.593 23.855 Atomic orbital electron populations 1.23352 0.76468 1.05538 1.02260 1.86016 1.23283 1.26029 1.88547 1.18527 0.91012 0.85003 0.96243 1.21410 1.01142 0.91452 1.10473 1.21044 0.93271 0.98329 0.96145 1.21627 0.94818 0.98851 1.06381 1.17271 0.81696 0.93276 0.98075 1.42498 1.05026 1.20733 1.63493 1.16239 0.82879 0.82787 0.78641 1.90776 1.64577 1.37591 1.56653 1.45620 1.03259 1.21570 1.65982 1.18797 0.90763 0.84290 0.91307 0.95004 1.22129 0.99356 1.01529 0.97037 1.21172 0.97823 0.94067 1.43379 0.92312 1.25591 0.95591 1.01744 0.93691 1.69971 1.13896 1.26381 1.46443 0.86059 0.79174 0.79835 0.79804 1.20053 1.20255 1.17897 1.18948 0.91980 0.94452 1.11550 1.20528 0.98641 0.93414 1.02997 0.91659 0.91902 0.86196 0.82813 0.83875 0.85262 0.74147 0.76049 0.92337 0.93152 0.94571 0.91952 0.90253 0.90553 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.41 9.54 -92.45 -0.88 -7.29 16 3 C 0.14 3.27 6.66 22.49 0.15 3.42 16 4 C -0.23 -4.90 9.04 22.39 0.20 -4.70 16 5 C -0.07 -1.78 10.03 22.24 0.22 -1.55 16 6 C -0.20 -6.42 8.79 22.41 0.20 -6.23 16 7 C 0.19 5.94 6.43 38.13 0.25 6.18 16 8 N -0.67 -20.38 4.97 -317.22 -1.58 -21.96 16 9 C 0.69 27.03 8.42 179.05 1.51 28.54 16 10 O -0.61 -28.28 12.92 -4.00 -0.05 -28.33 16 11 N -0.71 -28.05 5.07 -461.43 -2.34 -30.39 16 12 C 0.25 11.84 2.22 44.24 0.10 11.93 16 13 H 0.03 1.64 4.72 -2.38 -0.01 1.63 16 14 C -0.14 -6.08 9.47 71.98 0.68 -5.40 16 15 C -0.53 -28.07 9.05 25.60 0.23 -27.84 16 16 H 0.06 3.32 8.06 -2.91 -0.02 3.29 16 17 C 0.03 1.93 5.47 84.66 0.46 2.39 16 18 N -0.93 -54.86 13.96 21.45 0.30 -54.56 16 19 Si 0.93 44.32 26.99 68.60 1.85 46.17 16 20 H -0.27 -13.15 7.11 99.48 0.71 -12.45 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 22 H -0.25 -11.91 6.81 99.48 0.68 -11.23 16 23 C -0.17 -4.27 5.91 -19.65 -0.12 -4.38 16 24 C -0.10 -1.99 9.23 71.23 0.66 -1.33 16 25 H 0.06 0.59 7.66 -2.39 -0.02 0.57 16 26 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 27 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.15 2.30 6.29 -2.91 -0.02 2.28 16 29 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 30 H 0.13 5.05 5.51 -2.91 -0.02 5.03 16 31 H 0.42 9.85 7.43 -92.71 -0.69 9.16 16 32 H 0.40 13.69 8.61 -92.71 -0.80 12.89 16 33 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.27 15.05 8.31 -92.71 -0.77 14.27 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.08 1.46 7.53 -2.39 -0.02 1.44 16 39 H 0.07 1.25 6.99 -2.38 -0.02 1.24 16 Total: -1.00 -68.92 322.54 2.52 -66.40 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -0.43 Total: 27.63 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 5.65 Total: 2.34 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -3.62 Total: -106.91 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -0.93 Total: -35.63 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.85 Total: 46.17 kcal Total: -68.92 2.52 -66.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599860251.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.467 kcal (2) G-P(sol) polarization free energy of solvation -68.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds