Wall clock time and date at job start Mon Mar 30 2020 23:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99983 * 2 1 4 4 C 1.38813 * 120.01929 * 359.97438 * 3 2 1 5 5 C 1.38164 * 120.08366 * 179.97438 * 4 3 2 6 6 C 1.38171 * 120.12574 * 359.76951 * 5 4 3 7 7 C 1.38889 * 120.03776 * 0.50678 * 6 5 4 8 8 N 1.39937 * 120.04228 * 179.74504 * 7 6 5 9 9 C 1.34777 * 119.99937 * 335.17256 * 8 7 6 10 10 O 1.21591 * 120.00115 * 354.37450 * 9 8 7 11 11 N 1.34772 * 119.99619 * 174.37811 * 9 8 7 12 12 C 1.46508 * 119.99550 * 179.71748 * 11 9 8 13 13 H 1.08996 * 109.47342 * 325.28105 * 12 11 9 14 14 C 1.53004 * 109.46734 * 85.27906 * 12 11 9 15 15 C 1.50705 * 109.47150 * 205.27551 * 12 11 9 16 16 H 1.07997 * 119.99995 * 0.02562 * 15 12 11 17 17 C 1.37874 * 119.99964 * 180.02562 * 15 12 11 18 18 N 1.31518 * 119.99743 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 120.00192 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.47033 * 89.99742 * 19 17 15 21 21 H 1.48497 * 109.47316 * 210.00072 * 19 17 15 22 22 H 1.48501 * 109.47082 * 330.00236 * 19 17 15 23 23 C 1.38580 * 120.02183 * 179.97438 * 3 2 1 24 24 C 1.50700 * 120.06234 * 0.02562 * 23 3 2 25 25 H 1.09000 * 109.47012 * 299.99347 * 1 2 3 26 26 H 1.08998 * 109.47341 * 59.99488 * 1 2 3 27 27 H 1.09000 * 109.46981 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.95759 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.93963 * 180.02562 * 5 4 3 30 30 H 1.07994 * 119.98523 * 180.27211 * 6 5 4 31 31 H 0.96995 * 119.99664 * 155.16767 * 8 7 6 32 32 H 0.96999 * 120.00717 * 0.02562 * 11 9 8 33 33 H 1.08996 * 109.47043 * 60.00016 * 14 12 11 34 34 H 1.08997 * 109.47237 * 179.97438 * 14 12 11 35 35 H 1.08997 * 109.47067 * 300.00090 * 14 12 11 36 36 H 0.97007 * 119.99783 * 180.02562 * 18 17 15 37 37 H 1.08998 * 109.46999 * 269.97131 * 24 23 3 38 38 H 1.09002 * 109.46713 * 29.97517 * 24 23 3 39 39 H 1.09003 * 109.46983 * 149.97143 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2903 2.3753 -0.0005 5 6 1.9162 3.6071 0.0000 6 6 3.2957 3.6840 0.0059 7 6 4.0569 2.5222 0.0006 8 7 5.4541 2.6000 0.0012 9 6 6.0681 3.6974 -0.4838 10 8 5.4149 4.5749 -1.0146 11 7 7.4060 3.8220 -0.3804 12 6 8.0741 5.0121 -0.9131 13 1 7.5588 5.3456 -1.8138 14 6 8.0426 6.1266 0.1348 15 6 9.5050 4.6775 -1.2476 16 1 9.8791 3.6783 -1.0805 17 6 10.3364 5.6471 -1.7669 18 7 9.8808 6.8640 -1.9698 19 14 12.1097 5.2322 -2.1822 20 1 12.1916 4.7609 -3.5881 21 1 12.9533 6.4430 -2.0160 22 1 12.5940 4.1629 -1.2727 23 6 3.4298 1.2839 0.0005 24 6 4.2525 0.0213 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2118 2.3183 -0.0005 29 1 1.3260 4.5115 0.0000 30 1 3.7826 4.6479 0.0107 31 1 5.9806 1.8642 0.3507 32 1 7.9272 3.1218 0.0427 33 1 8.5579 5.7931 1.0355 34 1 8.5400 7.0119 -0.2613 35 1 7.0077 6.3685 0.3768 36 1 10.4657 7.5461 -2.3355 37 1 4.4508 -0.2831 1.0282 38 1 3.7050 -0.7689 -0.5133 39 1 5.1965 0.2027 -0.5134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599860252.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:02 Heat of formation + Delta-G solvation = -41.417104 kcal Electronic energy + Delta-G solvation = -21332.456124 eV Core-core repulsion = 18047.615891 eV Total energy + Delta-G solvation = -3284.840233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.59571 -39.43282 -37.37223 -34.98427 -34.25638 -32.48111 -32.21838 -29.52323 -28.16299 -27.70864 -26.43684 -25.26651 -22.81248 -21.55252 -20.81913 -19.87912 -18.32853 -18.13108 -16.48538 -15.95894 -15.86076 -15.73789 -15.42502 -14.89277 -14.56002 -14.18024 -13.66156 -13.56523 -13.26643 -13.22504 -12.48553 -12.41845 -12.17691 -12.10667 -11.78266 -11.49079 -11.32933 -11.07675 -10.99085 -10.86139 -10.75689 -10.32121 -10.24736 -10.03205 -9.32765 -9.07431 -8.57307 -8.16450 -8.03090 -7.63223 -6.14244 -4.23521 1.42832 1.61984 2.94178 3.23941 3.30532 3.32141 3.46056 3.63617 4.08285 4.31301 4.79727 4.86797 4.95914 4.99101 5.02126 5.18566 5.22958 5.27643 5.48861 5.56833 5.67389 5.68252 5.83982 6.21226 6.36315 6.44568 6.51379 6.74264 6.80116 6.96217 7.09704 7.12395 7.24196 7.42413 7.44663 7.60489 7.81396 7.97445 8.13408 8.69937 8.81669 9.19669 9.44685 10.91831 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039086 B = 0.003453 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.204270 B = 8107.233919 C = 8614.822251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.142 3.858 4 C -0.236 4.236 5 C -0.065 4.065 6 C -0.164 4.164 7 C 0.221 3.779 8 N -0.689 5.689 9 C 0.692 3.308 10 O -0.577 6.577 11 N -0.717 5.717 12 C 0.280 3.720 13 H 0.050 0.950 14 C -0.148 4.148 15 C -0.535 4.535 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.883 5.883 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.164 4.164 24 C -0.100 4.100 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.153 0.847 31 H 0.403 0.597 32 H 0.387 0.613 33 H 0.026 0.974 34 H 0.091 0.909 35 H 0.015 0.985 36 H 0.265 0.735 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.813 -12.253 6.058 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.097 3.903 4 C -0.256 4.256 5 C -0.084 4.084 6 C -0.185 4.185 7 C 0.123 3.877 8 N -0.335 5.335 9 C 0.393 3.607 10 O -0.454 6.454 11 N -0.368 5.368 12 C 0.178 3.822 13 H 0.068 0.932 14 C -0.207 4.207 15 C -0.573 4.573 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.520 5.520 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.168 4.168 24 C -0.157 4.157 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.170 0.830 31 H 0.239 0.761 32 H 0.219 0.781 33 H 0.045 0.955 34 H 0.110 0.890 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.095 -11.363 5.486 19.674 hybrid contribution 1.166 -0.692 0.098 1.359 sum -13.929 -12.054 5.584 19.248 Atomic orbital electron populations 1.23001 0.78751 1.03486 1.01329 1.86013 1.20975 1.27052 1.88972 1.18356 0.90973 0.83993 0.97000 1.21065 0.99523 0.92355 1.12631 1.20794 0.94154 0.96771 0.96697 1.21484 0.93347 0.99308 1.04324 1.17110 0.82188 0.92528 0.95832 1.42902 1.04591 1.20741 1.65275 1.16156 0.83332 0.81749 0.79495 1.90846 1.64245 1.41344 1.49000 1.45903 1.03739 1.25242 1.61940 1.18706 0.91214 0.79407 0.92864 0.93198 1.22103 0.97692 1.02452 0.98420 1.21207 0.94986 0.97135 1.44002 0.92051 1.24880 0.98921 0.94797 0.95089 1.69906 1.36176 1.02289 1.43641 0.86425 0.83830 0.77901 0.78797 1.20547 1.21050 1.19854 1.18692 0.91052 0.94395 1.12648 1.20477 0.98848 0.94548 1.01860 0.92786 0.92764 0.88579 0.85942 0.85764 0.82990 0.76127 0.78115 0.95470 0.89047 0.96554 0.92521 0.91738 0.91056 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.71 9.54 -19.42 -0.19 -3.89 16 3 C 0.14 1.90 6.66 -39.24 -0.26 1.64 16 4 C -0.24 -2.96 9.04 -39.40 -0.36 -3.32 16 5 C -0.07 -0.90 10.03 -39.63 -0.40 -1.30 16 6 C -0.16 -2.74 8.71 -39.37 -0.34 -3.09 16 7 C 0.22 3.57 6.41 -83.71 -0.54 3.03 16 8 N -0.69 -11.01 4.99 -14.24 -0.07 -11.08 16 9 C 0.69 14.10 8.33 -86.92 -0.72 13.37 16 10 O -0.58 -13.83 13.16 5.29 0.07 -13.76 16 11 N -0.72 -14.82 5.07 -59.81 -0.30 -15.12 16 12 C 0.28 7.07 2.56 -69.07 -0.18 6.89 16 13 H 0.05 1.46 7.57 -51.93 -0.39 1.07 16 14 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 15 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 18 N -0.88 -24.71 11.32 55.43 0.63 -24.08 16 19 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 C -0.16 -2.32 5.91 -104.29 -0.62 -2.94 16 24 C -0.10 -1.16 9.23 36.01 0.33 -0.82 16 25 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 26 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.12 1.19 6.29 -52.49 -0.33 0.86 16 29 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 30 H 0.15 2.91 5.78 -52.49 -0.30 2.61 16 31 H 0.40 5.10 7.41 -40.82 -0.30 4.79 16 32 H 0.39 6.80 8.56 -40.82 -0.35 6.45 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.80 7.53 -51.93 -0.39 0.41 16 39 H 0.06 0.69 6.98 -51.93 -0.36 0.32 16 LS Contribution 323.11 15.07 4.87 4.87 Total: -1.00 -31.30 323.11 -7.35 -38.66 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -5.20 Total: 10.23 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -2.14 Total: -1.29 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.25 Total: -50.29 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.12 Total: -17.66 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.30 -7.35 -38.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599860252.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.762 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds