Wall clock time and date at job start Mon Mar 30 2020 23:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99983 * 2 1 4 4 C 1.38813 * 120.01929 * 359.97438 * 3 2 1 5 5 C 1.38164 * 120.08366 * 179.97438 * 4 3 2 6 6 C 1.38171 * 120.12574 * 359.76951 * 5 4 3 7 7 C 1.38889 * 120.03776 * 0.50678 * 6 5 4 8 8 N 1.39937 * 120.04228 * 179.74504 * 7 6 5 9 9 C 1.34777 * 119.99937 * 335.17256 * 8 7 6 10 10 O 1.21591 * 120.00115 * 354.37450 * 9 8 7 11 11 N 1.34772 * 119.99619 * 174.37811 * 9 8 7 12 12 C 1.46508 * 119.99550 * 179.71748 * 11 9 8 13 13 H 1.08996 * 109.47342 * 325.28105 * 12 11 9 14 14 C 1.53004 * 109.46734 * 85.27906 * 12 11 9 15 15 C 1.50705 * 109.47150 * 205.27551 * 12 11 9 16 16 H 1.07997 * 119.99995 * 0.02562 * 15 12 11 17 17 C 1.37874 * 119.99964 * 180.02562 * 15 12 11 18 18 N 1.31518 * 119.99743 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 120.00192 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.47033 * 89.99742 * 19 17 15 21 21 H 1.48497 * 109.47316 * 210.00072 * 19 17 15 22 22 H 1.48501 * 109.47082 * 330.00236 * 19 17 15 23 23 C 1.38580 * 120.02183 * 179.97438 * 3 2 1 24 24 C 1.50700 * 120.06234 * 0.02562 * 23 3 2 25 25 H 1.09000 * 109.47012 * 299.99347 * 1 2 3 26 26 H 1.08998 * 109.47341 * 59.99488 * 1 2 3 27 27 H 1.09000 * 109.46981 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.95759 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.93963 * 180.02562 * 5 4 3 30 30 H 1.07994 * 119.98523 * 180.27211 * 6 5 4 31 31 H 0.96995 * 119.99664 * 155.16767 * 8 7 6 32 32 H 0.96999 * 120.00717 * 0.02562 * 11 9 8 33 33 H 1.08996 * 109.47043 * 60.00016 * 14 12 11 34 34 H 1.08997 * 109.47237 * 179.97438 * 14 12 11 35 35 H 1.08997 * 109.47067 * 300.00090 * 14 12 11 36 36 H 0.97007 * 119.99783 * 180.02562 * 18 17 15 37 37 H 1.08998 * 109.46999 * 269.97131 * 24 23 3 38 38 H 1.09002 * 109.46713 * 29.97517 * 24 23 3 39 39 H 1.09003 * 109.46983 * 149.97143 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2903 2.3753 -0.0005 5 6 1.9162 3.6071 0.0000 6 6 3.2957 3.6840 0.0059 7 6 4.0569 2.5222 0.0006 8 7 5.4541 2.6000 0.0012 9 6 6.0681 3.6974 -0.4838 10 8 5.4149 4.5749 -1.0146 11 7 7.4060 3.8220 -0.3804 12 6 8.0741 5.0121 -0.9131 13 1 7.5588 5.3456 -1.8138 14 6 8.0426 6.1266 0.1348 15 6 9.5050 4.6775 -1.2476 16 1 9.8791 3.6783 -1.0805 17 6 10.3364 5.6471 -1.7669 18 7 9.8808 6.8640 -1.9698 19 14 12.1097 5.2322 -2.1822 20 1 12.1916 4.7609 -3.5881 21 1 12.9533 6.4430 -2.0160 22 1 12.5940 4.1629 -1.2727 23 6 3.4298 1.2839 0.0005 24 6 4.2525 0.0213 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2118 2.3183 -0.0005 29 1 1.3260 4.5115 0.0000 30 1 3.7826 4.6479 0.0107 31 1 5.9806 1.8642 0.3507 32 1 7.9272 3.1218 0.0427 33 1 8.5579 5.7931 1.0355 34 1 8.5400 7.0119 -0.2613 35 1 7.0077 6.3685 0.3768 36 1 10.4657 7.5461 -2.3355 37 1 4.4508 -0.2831 1.0282 38 1 3.7050 -0.7689 -0.5133 39 1 5.1965 0.2027 -0.5134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599860252.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:01 Heat of formation + Delta-G solvation = -62.248397 kcal Electronic energy + Delta-G solvation = -21333.359437 eV Core-core repulsion = 18047.615891 eV Total energy + Delta-G solvation = -3285.743546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.86147 -40.68286 -38.55651 -36.76701 -35.65260 -34.32007 -33.37348 -31.14051 -29.58787 -28.43954 -27.44926 -27.31318 -24.23969 -22.80799 -22.20409 -21.55383 -19.89606 -19.25429 -18.14144 -17.27803 -17.04594 -16.81052 -16.62744 -16.53857 -16.01733 -15.73982 -15.13864 -14.69686 -14.43805 -14.32675 -14.26854 -13.75732 -13.47224 -13.14071 -12.95612 -12.92835 -12.86870 -12.73411 -12.54278 -12.27763 -12.19203 -12.10576 -11.79185 -11.33309 -11.10924 -10.95152 -10.59084 -9.86358 -9.17009 -8.87659 -8.17426 -6.34757 0.31067 0.49688 1.45822 1.46759 1.56834 1.65528 2.13692 2.40222 2.50212 2.85981 3.13389 3.40756 3.86056 4.01546 4.16028 4.31868 4.46657 4.46977 4.54223 4.61878 4.74805 4.79810 4.80830 4.82971 4.93828 5.09245 5.23445 5.29326 5.32486 5.38187 5.42365 5.56020 5.63007 5.68062 5.84419 5.94986 6.09134 6.24178 6.48491 6.72733 7.18521 7.33735 7.63253 8.89167 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039086 B = 0.003453 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.204270 B = 8107.233919 C = 8614.822251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.325 6.325 3 C 0.140 3.860 4 C -0.226 4.226 5 C -0.068 4.068 6 C -0.193 4.193 7 C 0.196 3.804 8 N -0.670 5.670 9 C 0.693 3.307 10 O -0.618 6.618 11 N -0.712 5.712 12 C 0.289 3.711 13 H 0.000 1.000 14 C -0.134 4.134 15 C -0.547 4.547 16 H 0.075 0.925 17 C 0.015 3.985 18 N -0.917 5.917 19 Si 0.974 3.026 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.259 1.259 23 C -0.167 4.167 24 C -0.098 4.098 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.120 0.880 28 H 0.156 0.844 29 H 0.144 0.856 30 H 0.119 0.881 31 H 0.420 0.580 32 H 0.404 0.596 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.012 0.988 36 H 0.266 0.734 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.435 -14.831 6.762 22.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.238 6.238 3 C 0.094 3.906 4 C -0.245 4.245 5 C -0.086 4.086 6 C -0.214 4.214 7 C 0.099 3.901 8 N -0.318 5.318 9 C 0.393 3.607 10 O -0.498 6.498 11 N -0.365 5.365 12 C 0.185 3.815 13 H 0.018 0.982 14 C -0.193 4.193 15 C -0.586 4.586 16 H 0.093 0.907 17 C -0.186 4.186 18 N -0.555 5.555 19 Si 0.799 3.201 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.183 1.183 23 C -0.171 4.171 24 C -0.155 4.155 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.139 0.861 28 H 0.173 0.827 29 H 0.162 0.838 30 H 0.137 0.863 31 H 0.259 0.741 32 H 0.239 0.761 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.031 0.969 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.745 -14.019 6.229 21.983 hybrid contribution 1.142 0.037 -0.112 1.149 sum -14.603 -13.983 6.117 21.122 Atomic orbital electron populations 1.23358 0.76435 1.05567 1.02285 1.86015 1.23313 1.25971 1.88519 1.18513 0.90967 0.85016 0.96086 1.21402 1.01180 0.91361 1.10581 1.21014 0.93096 0.98441 0.96075 1.21370 0.94915 0.98288 1.06828 1.17259 0.81778 0.93305 0.97728 1.42511 1.04971 1.19775 1.64532 1.16229 0.82955 0.82301 0.79208 1.90831 1.65046 1.43214 1.50722 1.45485 1.04099 1.24669 1.62203 1.18280 0.90907 0.81030 0.91284 0.98174 1.21923 0.97250 1.01523 0.98630 1.21537 0.95245 0.97796 1.43976 0.90698 1.25798 1.03340 0.94574 0.94842 1.70057 1.37753 1.03360 1.44362 0.85316 0.78376 0.77896 0.78562 1.20435 1.20961 1.18300 1.18938 0.92030 0.94398 1.11719 1.20525 0.98545 0.93356 1.03085 0.91561 0.91966 0.86144 0.82671 0.83838 0.86317 0.74135 0.76096 0.94050 0.91306 0.96924 0.92501 0.89987 0.90545 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.32 -6.61 9.54 -92.42 -0.88 -7.49 16 3 C 0.14 3.44 6.66 22.49 0.15 3.59 16 4 C -0.23 -5.14 9.04 22.39 0.20 -4.93 16 5 C -0.07 -1.83 10.03 22.24 0.22 -1.60 16 6 C -0.19 -6.67 8.71 22.41 0.20 -6.47 16 7 C 0.20 6.33 6.41 38.14 0.24 6.57 16 8 N -0.67 -21.51 4.99 -317.22 -1.58 -23.09 16 9 C 0.69 29.06 8.33 179.06 1.49 30.56 16 10 O -0.62 -31.30 13.16 -4.00 -0.05 -31.35 16 11 N -0.71 -29.87 5.07 -461.39 -2.34 -32.21 16 12 C 0.29 15.03 2.56 44.25 0.11 15.15 16 13 H 0.00 0.02 7.57 -2.39 -0.02 0.00 16 14 C -0.13 -6.85 9.26 71.98 0.67 -6.18 16 15 C -0.55 -28.82 8.73 25.60 0.22 -28.60 16 16 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 17 C 0.01 0.78 5.30 84.65 0.45 1.23 16 18 N -0.92 -52.54 11.32 21.45 0.24 -52.30 16 19 Si 0.97 41.76 29.54 68.60 2.03 43.79 16 20 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 23 C -0.17 -4.50 5.91 -19.65 -0.12 -4.62 16 24 C -0.10 -2.06 9.23 71.24 0.66 -1.40 16 25 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 26 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 27 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.16 2.44 6.29 -2.91 -0.02 2.42 16 29 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 30 H 0.12 4.90 5.78 -2.91 -0.02 4.88 16 31 H 0.42 10.23 7.41 -92.71 -0.69 9.55 16 32 H 0.40 13.95 8.56 -92.71 -0.79 13.16 16 33 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.07 3.83 6.07 -2.39 -0.01 3.81 16 35 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.27 14.40 8.31 -92.70 -0.77 13.62 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 1.53 7.53 -2.39 -0.02 1.51 16 39 H 0.06 1.30 6.98 -2.39 -0.02 1.28 16 Total: -1.00 -69.94 323.11 2.63 -67.31 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: -0.39 Total: 30.73 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 5.61 Total: 4.61 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -3.68 Total: -107.60 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -0.93 Total: -38.84 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -69.94 2.63 -67.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599860252.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.061 kcal (2) G-P(sol) polarization free energy of solvation -69.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds