Wall clock time and date at job start Tue Mar 31 2020 00:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34510 * 125.78560 * 2 1 4 4 C 1.41384 * 106.83837 * 180.02562 * 3 2 1 5 5 C 1.34512 * 106.83986 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.78888 * 179.97438 * 5 4 3 7 7 N 1.46497 * 109.47293 * 90.00336 * 6 5 4 8 8 C 1.34776 * 120.00194 * 180.02562 * 7 6 5 9 9 O 1.21582 * 120.00274 * 359.97438 * 8 7 6 10 10 N 1.34782 * 120.00034 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00258 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47269 * 184.79147 * 11 10 8 13 13 C 1.50694 * 115.55114 * 294.81128 * 12 11 10 14 14 H 1.08008 * 119.99906 * 95.20873 * 13 12 11 15 15 C 1.37875 * 120.00314 * 274.92789 * 13 12 11 16 16 N 1.31509 * 119.99913 * 355.42420 * 15 13 12 17 17 Si 1.86807 * 120.00040 * 175.41703 * 15 13 12 18 18 H 1.48494 * 109.47052 * 60.00642 * 17 15 13 19 19 H 1.48500 * 109.47055 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47106 * 300.00083 * 17 15 13 21 21 C 1.53003 * 117.49834 * 80.48431 * 12 11 10 22 22 C 1.53006 * 117.49908 * 149.14426 * 12 11 10 23 23 O 1.34298 * 125.78863 * 180.33714 * 2 1 3 24 24 H 1.09001 * 109.46592 * 90.00878 * 1 2 3 25 25 H 1.08995 * 109.47084 * 210.00331 * 1 2 3 26 26 H 1.08999 * 109.47101 * 330.00774 * 1 2 3 27 27 H 1.08000 * 126.58566 * 0.04986 * 3 2 1 28 28 H 1.08002 * 126.57854 * 180.02562 * 4 3 2 29 29 H 1.09007 * 109.47472 * 329.99986 * 6 5 4 30 30 H 1.09003 * 109.47615 * 210.00393 * 6 5 4 31 31 H 0.97004 * 119.99607 * 359.97438 * 7 6 5 32 32 H 0.96999 * 119.99637 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.47395 * 64.78624 * 11 10 8 34 34 H 1.09007 * 109.47080 * 304.78945 * 11 10 8 35 35 H 0.97001 * 119.99960 * 184.99387 * 16 15 13 36 36 H 1.09003 * 117.50034 * 214.99852 * 21 12 11 37 37 H 1.09002 * 117.49971 * 0.02686 * 21 12 11 38 38 H 1.08996 * 117.49810 * 359.97342 * 22 12 11 39 39 H 1.08995 * 117.50078 * 144.97442 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0004 6 6 4.7706 -1.6378 -0.0014 7 7 5.1572 -1.9376 1.3795 8 6 6.2034 -2.7511 1.6249 9 8 6.8261 -3.2365 0.7003 10 7 6.5588 -3.0273 2.8953 11 6 7.6963 -3.9110 3.1621 12 6 7.8116 -4.1534 4.6683 13 6 8.1455 -2.9406 5.4981 14 1 7.3552 -2.3711 5.9646 15 6 9.4603 -2.5612 5.6665 16 7 10.4275 -3.3072 5.1792 17 14 9.8678 -0.9874 6.5868 18 1 9.3389 -1.0728 7.9717 19 1 11.3411 -0.8062 6.6294 20 1 9.2474 0.1680 5.8902 21 6 6.8838 -5.2001 5.2885 22 6 8.3762 -5.4998 5.1261 23 8 2.2924 -1.0894 -0.0064 24 1 -0.3632 -0.0002 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.9665 2.1204 0.0008 28 1 4.5212 1.2434 -0.0004 29 1 5.6036 -1.1587 -0.5161 30 1 4.5103 -2.5633 -0.5149 31 1 4.6607 -1.5500 2.1172 32 1 6.0618 -2.6403 3.6330 33 1 8.6119 -3.4449 2.7979 34 1 7.5450 -4.8622 2.6516 35 1 11.3531 -3.0798 5.3594 36 1 6.5150 -5.0115 6.2968 37 1 6.1916 -5.7163 4.6234 38 1 8.6650 -6.2130 4.3542 39 1 8.9894 -5.5082 6.0272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601605802.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:27 Heat of formation + Delta-G solvation = 3.416675 kcal Electronic energy + Delta-G solvation = -20863.932795 eV Core-core repulsion = 17581.036701 eV Total energy + Delta-G solvation = -3282.896094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.78985 -39.39578 -36.79246 -34.82757 -33.37453 -33.27514 -32.00864 -31.88972 -28.61634 -26.16921 -25.17848 -24.00049 -21.94670 -21.16528 -20.41997 -20.31047 -19.38107 -17.99730 -16.89784 -16.35349 -16.06680 -15.38718 -15.20241 -14.67201 -14.43764 -14.01339 -13.84577 -13.66392 -13.37117 -13.22175 -13.00120 -12.83568 -12.65846 -12.42416 -11.96335 -11.69211 -11.53844 -10.96336 -10.94941 -10.54013 -10.22171 -10.09984 -9.80317 -9.47261 -9.03515 -8.93478 -8.55934 -8.47113 -8.22817 -7.99481 -6.06149 -4.16027 1.40018 2.35065 2.64180 3.27333 3.33445 3.34374 3.36716 3.74975 4.35676 4.36434 4.67744 4.82451 4.85394 5.01299 5.12126 5.21640 5.33432 5.37166 5.39422 5.55676 5.63144 5.82345 5.94296 6.04884 6.32504 6.36646 6.49306 6.60121 6.63761 6.72723 6.85648 6.98268 7.13814 7.30360 7.42529 7.44705 7.61226 7.82046 8.35423 8.61880 8.84964 9.15253 9.50952 11.01013 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020483 B = 0.003588 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.691242 B = 7801.835445 C = 8335.961040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.009 4.009 3 C -0.216 4.216 4 C -0.183 4.183 5 C -0.032 4.032 6 C 0.225 3.775 7 N -0.753 5.753 8 C 0.700 3.300 9 O -0.603 6.603 10 N -0.719 5.719 11 C 0.182 3.818 12 C 0.024 3.976 13 C -0.500 4.500 14 H 0.059 0.941 15 C 0.074 3.926 16 N -0.875 5.875 17 Si 0.891 3.109 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.211 4.211 22 C -0.141 4.141 23 O -0.170 6.170 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.148 0.852 28 H 0.151 0.849 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.397 0.603 32 H 0.397 0.603 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.780 6.858 -8.336 19.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 C -0.235 4.235 4 C -0.203 4.203 5 C -0.082 4.082 6 C 0.101 3.899 7 N -0.411 5.411 8 C 0.400 3.600 9 O -0.482 6.482 10 N -0.371 5.371 11 C 0.058 3.942 12 C 0.024 3.976 13 C -0.538 4.538 14 H 0.077 0.923 15 C -0.131 4.131 16 N -0.510 5.510 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.248 4.248 22 C -0.180 4.180 23 O -0.066 6.066 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.166 0.834 28 H 0.169 0.831 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.230 0.770 32 H 0.231 0.769 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.039 6.090 -9.261 19.497 hybrid contribution -0.016 1.484 1.238 1.932 sum -16.055 7.574 -8.023 19.481 Atomic orbital electron populations 1.20319 0.85091 1.04144 1.03515 1.22511 0.94080 0.84249 1.05179 1.21598 0.92673 0.99456 1.09764 1.21703 0.98406 0.93819 1.06351 1.22377 0.82983 0.94526 1.08275 1.19310 0.89577 0.96845 0.84192 1.45135 1.34882 1.53502 1.07563 1.15978 0.80263 0.79468 0.84291 1.90879 1.56356 1.57350 1.43652 1.45156 1.35197 1.52017 1.04712 1.20874 0.86591 0.90642 0.96068 1.19040 0.98329 0.90138 0.90132 1.20307 0.92037 1.09902 1.31565 0.92321 1.24983 0.96461 0.96589 0.95023 1.69977 0.99519 1.38033 1.43510 0.86689 0.77295 0.84031 0.80130 1.20315 1.21271 1.20195 1.23016 0.93318 1.07410 1.01090 1.22465 0.93516 0.99685 1.02290 1.83988 1.16320 1.35028 1.71294 0.90087 0.90451 0.89306 0.83406 0.83100 0.88605 0.90191 0.76951 0.76911 0.91651 0.94324 0.92811 0.90456 0.91717 0.91781 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.42 36.01 0.38 -0.08 16 2 C -0.01 -0.09 7.32 -35.62 -0.26 -0.36 16 3 C -0.22 -2.14 10.81 -39.70 -0.43 -2.57 16 4 C -0.18 -2.01 10.81 -39.70 -0.43 -2.44 16 5 C -0.03 -0.38 6.69 -35.63 -0.24 -0.62 16 6 C 0.22 2.94 6.20 -5.20 -0.03 2.91 16 7 N -0.75 -11.12 5.55 -66.41 -0.37 -11.48 16 8 C 0.70 13.49 8.57 -86.91 -0.74 12.74 16 9 O -0.60 -13.80 16.34 5.29 0.09 -13.71 16 10 N -0.72 -14.18 5.48 -65.23 -0.36 -14.54 16 11 C 0.18 4.17 5.50 -4.05 -0.02 4.15 16 12 C 0.02 0.58 1.47 -155.66 -0.23 0.35 16 13 C -0.50 -12.88 8.59 -34.44 -0.30 -13.18 16 14 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 15 C 0.07 1.95 5.43 -17.82 -0.10 1.86 16 16 N -0.87 -24.28 12.65 55.43 0.70 -23.58 16 17 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 C -0.21 -4.44 9.96 -26.69 -0.27 -4.70 16 22 C -0.14 -3.26 9.14 -26.69 -0.24 -3.51 16 23 O -0.17 -2.09 10.65 5.72 0.06 -2.03 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.10 1.23 8.14 -51.92 -0.42 0.80 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.40 5.09 8.48 -40.82 -0.35 4.74 16 32 H 0.40 7.17 8.34 -40.82 -0.34 6.83 16 33 H 0.07 1.71 8.14 -51.93 -0.42 1.28 16 34 H 0.04 0.88 8.09 -51.92 -0.42 0.46 16 35 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 36 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 LS Contribution 341.03 15.07 5.14 5.14 Total: -1.00 -30.93 341.03 -8.40 -39.33 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -5.73 Total: 10.76 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -2.91 Total: -5.44 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.03 Total: -49.61 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: 0.15 Total: -15.74 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.93 -8.40 -39.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601605802.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.743 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds