Wall clock time and date at job start Tue Mar 31 2020 00:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34510 * 125.78560 * 2 1 4 4 C 1.41384 * 106.83837 * 180.02562 * 3 2 1 5 5 C 1.34512 * 106.83986 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.78888 * 179.97438 * 5 4 3 7 7 N 1.46497 * 109.47293 * 90.00336 * 6 5 4 8 8 C 1.34776 * 120.00194 * 180.02562 * 7 6 5 9 9 O 1.21582 * 120.00274 * 359.97438 * 8 7 6 10 10 N 1.34782 * 120.00034 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00258 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47269 * 184.79147 * 11 10 8 13 13 C 1.50694 * 115.55114 * 294.81128 * 12 11 10 14 14 H 1.08008 * 119.99906 * 95.20873 * 13 12 11 15 15 C 1.37875 * 120.00314 * 274.92789 * 13 12 11 16 16 N 1.31509 * 119.99913 * 355.42420 * 15 13 12 17 17 Si 1.86807 * 120.00040 * 175.41703 * 15 13 12 18 18 H 1.48494 * 109.47052 * 60.00642 * 17 15 13 19 19 H 1.48500 * 109.47055 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47106 * 300.00083 * 17 15 13 21 21 C 1.53003 * 117.49834 * 80.48431 * 12 11 10 22 22 C 1.53006 * 117.49908 * 149.14426 * 12 11 10 23 23 O 1.34298 * 125.78863 * 180.33714 * 2 1 3 24 24 H 1.09001 * 109.46592 * 90.00878 * 1 2 3 25 25 H 1.08995 * 109.47084 * 210.00331 * 1 2 3 26 26 H 1.08999 * 109.47101 * 330.00774 * 1 2 3 27 27 H 1.08000 * 126.58566 * 0.04986 * 3 2 1 28 28 H 1.08002 * 126.57854 * 180.02562 * 4 3 2 29 29 H 1.09007 * 109.47472 * 329.99986 * 6 5 4 30 30 H 1.09003 * 109.47615 * 210.00393 * 6 5 4 31 31 H 0.97004 * 119.99607 * 359.97438 * 7 6 5 32 32 H 0.96999 * 119.99637 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.47395 * 64.78624 * 11 10 8 34 34 H 1.09007 * 109.47080 * 304.78945 * 11 10 8 35 35 H 0.97001 * 119.99960 * 184.99387 * 16 15 13 36 36 H 1.09003 * 117.50034 * 214.99852 * 21 12 11 37 37 H 1.09002 * 117.49971 * 0.02686 * 21 12 11 38 38 H 1.08996 * 117.49810 * 359.97342 * 22 12 11 39 39 H 1.08995 * 117.50078 * 144.97442 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0004 6 6 4.7706 -1.6378 -0.0014 7 7 5.1572 -1.9376 1.3795 8 6 6.2034 -2.7511 1.6249 9 8 6.8261 -3.2365 0.7003 10 7 6.5588 -3.0273 2.8953 11 6 7.6963 -3.9110 3.1621 12 6 7.8116 -4.1534 4.6683 13 6 8.1455 -2.9406 5.4981 14 1 7.3552 -2.3711 5.9646 15 6 9.4603 -2.5612 5.6665 16 7 10.4275 -3.3072 5.1792 17 14 9.8678 -0.9874 6.5868 18 1 9.3389 -1.0728 7.9717 19 1 11.3411 -0.8062 6.6294 20 1 9.2474 0.1680 5.8902 21 6 6.8838 -5.2001 5.2885 22 6 8.3762 -5.4998 5.1261 23 8 2.2924 -1.0894 -0.0064 24 1 -0.3632 -0.0002 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.9665 2.1204 0.0008 28 1 4.5212 1.2434 -0.0004 29 1 5.6036 -1.1587 -0.5161 30 1 4.5103 -2.5633 -0.5149 31 1 4.6607 -1.5500 2.1172 32 1 6.0618 -2.6403 3.6330 33 1 8.6119 -3.4449 2.7979 34 1 7.5450 -4.8622 2.6516 35 1 11.3531 -3.0798 5.3594 36 1 6.5150 -5.0115 6.2968 37 1 6.1916 -5.7163 4.6234 38 1 8.6650 -6.2130 4.3542 39 1 8.9894 -5.5082 6.0272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601605802.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:27 Heat of formation + Delta-G solvation = -16.402251 kcal Electronic energy + Delta-G solvation = -20864.792208 eV Core-core repulsion = 17581.036701 eV Total energy + Delta-G solvation = -3283.755508 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.61679 -40.95031 -38.57407 -36.12060 -34.96838 -34.15313 -33.94091 -32.78987 -29.65209 -27.89837 -26.89366 -25.05115 -22.93994 -22.76577 -21.86551 -21.23453 -21.21314 -19.45522 -18.30794 -17.60681 -17.20804 -16.79324 -16.67899 -16.47429 -15.73139 -15.50175 -15.18533 -14.93668 -14.50683 -14.38473 -13.88427 -13.78507 -13.74090 -13.57591 -13.44107 -13.18890 -12.91859 -12.78659 -12.60287 -12.37760 -12.00821 -11.52723 -11.30947 -10.92856 -10.88473 -10.44098 -10.36097 -10.03838 -9.64521 -9.35828 -8.07448 -6.21851 0.53418 1.44385 1.46169 1.51176 1.52339 1.79736 2.08234 2.19295 2.43819 3.20333 3.34897 3.54861 3.64006 3.95526 4.08327 4.25748 4.27482 4.48062 4.57442 4.61019 4.67750 4.72895 4.75814 4.82741 4.88225 5.00064 5.03878 5.06538 5.22951 5.30579 5.36384 5.57269 5.59129 5.62874 5.72435 5.79858 6.07258 6.17045 6.38530 6.85276 7.16201 7.47728 7.61723 8.99362 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020483 B = 0.003588 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.691242 B = 7801.835445 C = 8335.961040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.011 4.011 3 C -0.226 4.226 4 C -0.180 4.180 5 C -0.052 4.052 6 C 0.227 3.773 7 N -0.734 5.734 8 C 0.700 3.300 9 O -0.641 6.641 10 N -0.714 5.714 11 C 0.199 3.801 12 C 0.004 3.996 13 C -0.506 4.506 14 H 0.063 0.937 15 C 0.024 3.976 16 N -0.907 5.907 17 Si 0.950 3.050 18 H -0.269 1.269 19 H -0.292 1.292 20 H -0.273 1.273 21 C -0.178 4.178 22 C -0.152 4.152 23 O -0.188 6.188 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.172 0.828 28 H 0.161 0.839 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.409 0.591 32 H 0.407 0.593 33 H 0.025 0.975 34 H 0.036 0.964 35 H 0.259 0.741 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.162 8.295 -8.032 22.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.061 4.061 3 C -0.245 4.245 4 C -0.200 4.200 5 C -0.102 4.102 6 C 0.104 3.896 7 N -0.391 5.391 8 C 0.400 3.600 9 O -0.524 6.524 10 N -0.367 5.367 11 C 0.074 3.926 12 C 0.003 3.997 13 C -0.543 4.543 14 H 0.081 0.919 15 C -0.176 4.176 16 N -0.545 5.545 17 Si 0.777 3.223 18 H -0.194 1.194 19 H -0.217 1.217 20 H -0.198 1.198 21 C -0.215 4.215 22 C -0.191 4.191 23 O -0.086 6.086 24 H 0.114 0.886 25 H 0.098 0.902 26 H 0.128 0.872 27 H 0.189 0.811 28 H 0.178 0.822 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.244 0.756 32 H 0.242 0.758 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.481 7.563 -8.939 21.878 hybrid contribution 0.623 1.063 1.100 1.651 sum -17.858 8.626 -7.839 21.325 Atomic orbital electron populations 1.20530 0.82394 1.05337 1.04818 1.23325 0.95632 0.83688 1.03499 1.21931 0.92038 1.00693 1.09839 1.21968 0.99533 0.93530 1.04988 1.22100 0.82802 0.94555 1.10722 1.19294 0.90430 0.97021 0.82863 1.44996 1.33298 1.51869 1.08972 1.16080 0.80798 0.79656 0.83493 1.90852 1.57911 1.58947 1.44662 1.44932 1.34525 1.51885 1.05398 1.20437 0.86040 0.90584 0.95541 1.19060 1.00397 0.90035 0.90214 1.20635 0.92097 1.10460 1.31141 0.91856 1.25703 0.96607 0.99203 0.96123 1.70105 0.99581 1.39717 1.45064 0.85739 0.76648 0.80668 0.79292 1.19444 1.21748 1.19777 1.22996 0.92208 1.04782 1.01520 1.22391 0.95123 0.99856 1.01685 1.83973 1.16524 1.36297 1.71802 0.88618 0.90172 0.87172 0.81070 0.82154 0.88441 0.90751 0.75550 0.75764 0.95662 0.94527 0.93201 0.89696 0.89504 0.91219 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.42 71.24 0.74 0.05 16 2 C -0.01 -0.20 7.32 24.83 0.18 -0.01 16 3 C -0.23 -3.94 10.81 22.19 0.24 -3.70 16 4 C -0.18 -3.67 10.81 22.19 0.24 -3.43 16 5 C -0.05 -1.20 6.69 24.83 0.17 -1.04 16 6 C 0.23 5.85 6.20 85.63 0.53 6.38 16 7 N -0.73 -21.09 5.55 -482.29 -2.68 -23.76 16 8 C 0.70 26.81 8.57 179.05 1.53 28.35 16 9 O -0.64 -29.71 16.34 -3.97 -0.06 -29.78 16 10 N -0.71 -27.89 5.48 -478.55 -2.62 -30.52 16 11 C 0.20 9.22 5.50 86.38 0.48 9.69 16 12 C 0.00 0.18 1.47 -52.93 -0.08 0.10 16 13 C -0.51 -25.79 8.59 25.60 0.22 -25.57 16 14 H 0.06 3.10 7.82 -2.91 -0.02 3.08 16 15 C 0.02 1.29 5.43 84.65 0.46 1.75 16 16 N -0.91 -51.31 12.65 21.45 0.27 -51.04 16 17 Si 0.95 42.15 29.54 68.60 2.03 44.18 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 C -0.18 -7.16 9.96 30.62 0.30 -6.85 16 22 C -0.15 -7.02 9.14 30.62 0.28 -6.74 16 23 O -0.19 -4.40 10.65 -2.45 -0.03 -4.43 16 24 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.11 0.56 8.14 -2.39 -0.02 0.55 16 27 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 28 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 29 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.41 9.90 8.48 -92.71 -0.79 9.11 16 32 H 0.41 14.19 8.34 -92.71 -0.77 13.41 16 33 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.04 1.69 8.09 -2.38 -0.02 1.67 16 35 H 0.26 14.17 8.32 -92.71 -0.77 13.40 16 36 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 37 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 38 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 39 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -66.44 341.03 1.71 -64.73 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -0.49 Total: 31.64 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 5.30 Total: -1.02 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -5.03 Total: -105.32 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.09 Total: -34.21 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -66.44 1.71 -64.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601605802.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.329 kcal (2) G-P(sol) polarization free energy of solvation -66.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds