Wall clock time and date at job start Tue Mar 31 2020 01:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40359 * 126.64781 * 2 1 4 4 C 1.35134 * 107.11586 * 179.70739 * 3 2 1 5 5 O 1.33930 * 108.76618 * 0.26345 * 4 3 2 6 6 C 1.34913 * 109.38627 * 359.97438 * 5 4 3 7 7 C 1.46654 * 125.98852 * 180.02562 * 6 5 4 8 8 O 1.21695 * 120.00177 * 187.58720 * 7 6 5 9 9 N 1.34776 * 120.00272 * 7.58136 * 7 6 5 10 10 C 1.47084 * 120.87641 * 6.75223 * 9 7 6 11 11 C 1.53699 * 108.27360 * 128.75663 * 10 9 7 12 12 N 1.46893 * 109.25958 * 54.08267 * 11 10 9 13 13 C 1.46901 * 111.00189 * 172.60717 * 12 11 10 14 14 C 1.50694 * 109.47206 * 294.30190 * 13 12 11 15 15 H 1.08003 * 119.99932 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00060 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00286 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00026 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46994 * 60.00107 * 18 16 14 20 20 H 1.48499 * 109.47059 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47210 * 300.00243 * 18 16 14 22 22 C 1.46903 * 111.26796 * 296.75379 * 12 11 10 23 23 C 1.47073 * 120.88598 * 187.03034 * 9 7 6 24 24 H 1.08996 * 109.47146 * 90.02575 * 1 2 3 25 25 H 1.09000 * 109.46946 * 210.02619 * 1 2 3 26 26 H 1.09004 * 109.46959 * 330.02301 * 1 2 3 27 27 H 1.07999 * 126.44320 * 359.96792 * 3 2 1 28 28 H 1.07999 * 125.61566 * 180.28267 * 4 3 2 29 29 H 1.09003 * 109.62798 * 248.51965 * 10 9 7 30 30 H 1.08994 * 109.63195 * 9.10037 * 10 9 7 31 31 H 1.09005 * 109.64381 * 294.07148 * 11 10 9 32 32 H 1.09002 * 109.41792 * 173.94755 * 11 10 9 33 33 H 1.09007 * 109.46804 * 54.30103 * 13 12 11 34 34 H 1.08999 * 109.47264 * 174.29676 * 13 12 11 35 35 H 0.96998 * 120.00490 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.49386 * 303.14883 * 22 12 11 37 37 H 1.08999 * 109.51391 * 183.07639 * 22 12 11 38 38 H 1.09007 * 109.62886 * 350.89841 * 23 9 7 39 39 H 1.09003 * 109.63170 * 111.47738 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1261 0.0000 4 6 3.6184 0.6743 0.0066 5 8 3.6005 -0.6648 0.0048 6 6 2.3220 -1.0956 -0.0024 7 6 1.8842 -2.4953 -0.0060 8 8 0.7063 -2.7641 -0.1516 9 7 2.7865 -3.4840 0.1520 10 6 4.1889 -3.1814 0.4758 11 6 4.5940 -4.0228 1.6966 12 7 4.3115 -5.4384 1.4246 13 6 4.8433 -6.2960 2.4922 14 6 6.3482 -6.2176 2.4967 15 1 6.8586 -5.5935 1.7780 16 6 7.0736 -6.9426 3.4181 17 7 6.4521 -7.7022 4.2936 18 14 8.9391 -6.8460 3.4232 19 1 9.3614 -5.4419 3.6587 20 1 9.4766 -7.7118 4.5033 21 1 9.4622 -7.3069 2.1121 22 6 2.8731 -5.6674 1.2329 23 6 2.3962 -4.8937 -0.0008 24 1 -0.3633 -0.0005 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5135 27 1 2.0307 2.1594 -0.0005 28 1 4.5046 1.2915 0.0127 29 1 4.8236 -3.4340 -0.3737 30 1 4.2903 -2.1217 0.7098 31 1 4.0263 -3.6995 2.5691 32 1 5.6595 -3.8948 1.8875 33 1 4.4591 -5.9583 3.4548 34 1 4.5336 -7.3265 2.3187 35 1 6.9624 -8.2125 4.9417 36 1 2.3294 -5.3213 2.1119 37 1 2.6901 -6.7321 1.0878 38 1 1.3116 -4.9667 -0.0821 39 1 2.8618 -5.3078 -0.8952 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602209843.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:10 Heat of formation + Delta-G solvation = -2.970584 kcal Electronic energy + Delta-G solvation = -21886.533406 eV Core-core repulsion = 18603.360339 eV Total energy + Delta-G solvation = -3283.173067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.86667 -39.71347 -37.56646 -34.75771 -33.94238 -32.46157 -31.21302 -30.19564 -28.55553 -27.46502 -25.50954 -23.46400 -23.03324 -21.82303 -21.31223 -20.15534 -19.08826 -17.37474 -16.67858 -16.40190 -16.36406 -15.76454 -14.86358 -14.71866 -14.41432 -14.14424 -13.89192 -13.67619 -13.42005 -13.23594 -13.17240 -12.79678 -12.68102 -12.11424 -11.89182 -11.88391 -11.28773 -11.08805 -10.90301 -10.76581 -10.59175 -10.56568 -10.00723 -9.89187 -9.78720 -9.30669 -8.83083 -8.49823 -8.40287 -7.34186 -6.06956 -4.09218 0.99446 2.21198 2.58381 3.10143 3.22492 3.30368 3.35039 3.37377 4.38042 4.44643 4.62953 4.71259 4.83153 5.27073 5.29198 5.31437 5.38003 5.39016 5.54132 5.57610 5.60704 5.66366 5.78857 5.83991 5.93697 6.01674 6.11543 6.27448 6.28860 6.45604 6.48238 6.62116 6.79437 7.20603 7.27121 7.45395 7.72842 8.00044 8.09086 8.11422 8.46324 8.97623 9.55314 11.03844 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026645 B = 0.004164 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.590905 B = 6722.777253 C = 7489.573214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.093 4.093 3 C -0.226 4.226 4 C -0.013 4.013 5 O -0.154 6.154 6 C -0.077 4.077 7 C 0.598 3.402 8 O -0.530 6.530 9 N -0.598 5.598 10 C 0.100 3.900 11 C 0.052 3.948 12 N -0.536 5.536 13 C 0.193 3.807 14 C -0.511 4.511 15 H 0.063 0.937 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.041 3.959 23 C 0.119 3.881 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.153 0.847 28 H 0.208 0.792 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.025 0.975 32 H 0.098 0.902 33 H -0.009 1.009 34 H 0.032 0.968 35 H 0.262 0.738 36 H 0.028 0.972 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.489 15.894 -8.611 19.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.245 4.245 4 C -0.082 4.082 5 O -0.050 6.050 6 C -0.128 4.128 7 C 0.387 3.613 8 O -0.410 6.410 9 N -0.330 5.330 10 C -0.022 4.022 11 C -0.077 4.077 12 N -0.261 5.261 13 C 0.069 3.931 14 C -0.549 4.549 15 H 0.082 0.918 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.727 3.273 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.089 4.089 23 C -0.003 4.003 24 H 0.091 0.909 25 H 0.102 0.898 26 H 0.083 0.917 27 H 0.171 0.829 28 H 0.225 0.775 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.043 0.957 32 H 0.116 0.884 33 H 0.009 0.991 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.583 15.240 -8.955 19.234 hybrid contribution 0.773 0.438 0.933 1.288 sum -6.810 15.678 -8.022 18.882 Atomic orbital electron populations 1.20368 0.88337 1.03258 1.02770 1.20615 0.97583 0.91020 1.00336 1.21703 0.92473 0.99983 1.10328 1.24477 0.99905 0.81461 1.02387 1.84301 1.28152 1.22013 1.70537 1.21922 0.81457 0.94808 1.14658 1.16678 0.85340 0.81880 0.77429 1.90809 1.15981 1.82139 1.52066 1.48141 1.10273 1.06606 1.67931 1.22495 0.80215 1.00344 0.99102 1.22411 1.02533 0.88884 0.93893 1.62095 1.10892 1.04901 1.48202 1.19730 0.95288 0.91775 0.86341 1.21097 0.90839 1.27263 1.15729 0.91844 1.24988 0.98832 0.95297 0.95397 1.69945 1.35769 1.28915 1.19078 0.86551 0.85193 0.77948 0.77656 1.20264 1.21354 1.20118 1.22409 0.90601 1.00048 0.95830 1.21847 1.00879 0.78600 0.99002 0.90855 0.89821 0.91653 0.82880 0.77522 0.90445 0.88457 0.95708 0.88365 0.99082 0.94961 0.92796 0.95418 0.89849 0.89125 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 9.74 36.01 0.35 -0.65 16 2 C -0.09 -1.16 6.20 -104.43 -0.65 -1.80 16 3 C -0.23 -2.21 10.83 -39.89 -0.43 -2.64 16 4 C -0.01 -0.12 12.08 29.63 0.36 0.24 16 5 O -0.15 -1.93 7.28 5.00 0.04 -1.89 16 6 C -0.08 -1.10 6.76 -36.80 -0.25 -1.35 16 7 C 0.60 9.75 7.65 -12.86 -0.10 9.65 16 8 O -0.53 -9.46 14.32 5.19 0.07 -9.38 16 9 N -0.60 -9.65 3.00 -173.73 -0.52 -10.17 16 10 C 0.10 1.57 6.26 -3.36 -0.02 1.55 16 11 C 0.05 0.98 5.47 -3.46 -0.02 0.96 16 12 N -0.54 -11.25 4.62 -235.46 -1.09 -12.34 16 13 C 0.19 4.94 4.72 -4.98 -0.02 4.92 16 14 C -0.51 -13.93 8.41 -34.45 -0.29 -14.22 16 15 H 0.06 1.69 7.13 -52.48 -0.37 1.32 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 18 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C 0.04 0.73 5.62 -3.70 -0.02 0.71 16 23 C 0.12 1.87 6.61 -3.60 -0.02 1.85 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.08 1.08 6.65 -51.93 -0.35 0.73 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 28 H 0.21 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.10 1.39 4.38 -52.49 -0.23 1.16 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 1.95 6.67 -51.93 -0.35 1.60 16 33 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 34 H 0.03 0.88 7.97 -51.93 -0.41 0.46 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 1.44 7.99 -51.93 -0.41 1.03 16 38 H 0.09 1.38 7.04 -51.92 -0.37 1.01 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 318.41 15.07 4.80 4.80 Total: -1.00 -31.46 318.41 -7.63 -39.09 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.43 Total: -1.33 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.21 Total: 0.68 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.87 Total: -48.10 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.11 Total: -11.28 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.46 -7.63 -39.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602209843.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.118 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds