Wall clock time and date at job start Tue Mar 31 2020 01:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40359 * 126.64781 * 2 1 4 4 C 1.35134 * 107.11586 * 179.70739 * 3 2 1 5 5 O 1.33930 * 108.76618 * 0.26345 * 4 3 2 6 6 C 1.34913 * 109.38627 * 359.97438 * 5 4 3 7 7 C 1.46654 * 125.98852 * 180.02562 * 6 5 4 8 8 O 1.21695 * 120.00177 * 187.58720 * 7 6 5 9 9 N 1.34776 * 120.00272 * 7.58136 * 7 6 5 10 10 C 1.47084 * 120.87641 * 6.75223 * 9 7 6 11 11 C 1.53699 * 108.27360 * 128.75663 * 10 9 7 12 12 N 1.46893 * 109.25958 * 54.08267 * 11 10 9 13 13 C 1.46901 * 111.00189 * 172.60717 * 12 11 10 14 14 C 1.50694 * 109.47206 * 294.30190 * 13 12 11 15 15 H 1.08003 * 119.99932 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00060 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00286 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00026 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46994 * 60.00107 * 18 16 14 20 20 H 1.48499 * 109.47059 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47210 * 300.00243 * 18 16 14 22 22 C 1.46903 * 111.26796 * 296.75379 * 12 11 10 23 23 C 1.47073 * 120.88598 * 187.03034 * 9 7 6 24 24 H 1.08996 * 109.47146 * 90.02575 * 1 2 3 25 25 H 1.09000 * 109.46946 * 210.02619 * 1 2 3 26 26 H 1.09004 * 109.46959 * 330.02301 * 1 2 3 27 27 H 1.07999 * 126.44320 * 359.96792 * 3 2 1 28 28 H 1.07999 * 125.61566 * 180.28267 * 4 3 2 29 29 H 1.09003 * 109.62798 * 248.51965 * 10 9 7 30 30 H 1.08994 * 109.63195 * 9.10037 * 10 9 7 31 31 H 1.09005 * 109.64381 * 294.07148 * 11 10 9 32 32 H 1.09002 * 109.41792 * 173.94755 * 11 10 9 33 33 H 1.09007 * 109.46804 * 54.30103 * 13 12 11 34 34 H 1.08999 * 109.47264 * 174.29676 * 13 12 11 35 35 H 0.96998 * 120.00490 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.49386 * 303.14883 * 22 12 11 37 37 H 1.08999 * 109.51391 * 183.07639 * 22 12 11 38 38 H 1.09007 * 109.62886 * 350.89841 * 23 9 7 39 39 H 1.09003 * 109.63170 * 111.47738 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1261 0.0000 4 6 3.6184 0.6743 0.0066 5 8 3.6005 -0.6648 0.0048 6 6 2.3220 -1.0956 -0.0024 7 6 1.8842 -2.4953 -0.0060 8 8 0.7063 -2.7641 -0.1516 9 7 2.7865 -3.4840 0.1520 10 6 4.1889 -3.1814 0.4758 11 6 4.5940 -4.0228 1.6966 12 7 4.3115 -5.4384 1.4246 13 6 4.8433 -6.2960 2.4922 14 6 6.3482 -6.2176 2.4967 15 1 6.8586 -5.5935 1.7780 16 6 7.0736 -6.9426 3.4181 17 7 6.4521 -7.7022 4.2936 18 14 8.9391 -6.8460 3.4232 19 1 9.3614 -5.4419 3.6587 20 1 9.4766 -7.7118 4.5033 21 1 9.4622 -7.3069 2.1121 22 6 2.8731 -5.6674 1.2329 23 6 2.3962 -4.8937 -0.0008 24 1 -0.3633 -0.0005 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5135 27 1 2.0307 2.1594 -0.0005 28 1 4.5046 1.2915 0.0127 29 1 4.8236 -3.4340 -0.3737 30 1 4.2903 -2.1217 0.7098 31 1 4.0263 -3.6995 2.5691 32 1 5.6595 -3.8948 1.8875 33 1 4.4591 -5.9583 3.4548 34 1 4.5336 -7.3265 2.3187 35 1 6.9624 -8.2125 4.9417 36 1 2.3294 -5.3213 2.1119 37 1 2.6901 -6.7321 1.0878 38 1 1.3116 -4.9667 -0.0821 39 1 2.8618 -5.3078 -0.8952 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602209843.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:10 Heat of formation + Delta-G solvation = -24.050044 kcal Electronic energy + Delta-G solvation = -21887.447479 eV Core-core repulsion = 18603.360339 eV Total energy + Delta-G solvation = -3284.087141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.74348 -41.00510 -39.03939 -36.19314 -35.03313 -34.39310 -32.51460 -31.21739 -30.12507 -28.68121 -27.14535 -24.85850 -24.42362 -23.27051 -22.43388 -21.40664 -20.23627 -18.54891 -18.49753 -17.69206 -17.42684 -16.87891 -16.67056 -16.06411 -15.98016 -15.53470 -15.35050 -15.14193 -14.48904 -14.42258 -14.14992 -14.01275 -13.86643 -13.56066 -13.42847 -13.06093 -12.77915 -12.75198 -12.57995 -12.37137 -12.28420 -12.18261 -11.74997 -11.31853 -11.20558 -10.64887 -10.60997 -9.98364 -9.52582 -9.10393 -8.20227 -6.31018 0.02153 1.42459 1.43581 1.46757 1.54541 1.59479 1.97461 2.11055 2.41439 3.11914 3.21157 3.44237 3.80259 3.90590 3.94721 4.01137 4.17641 4.24272 4.36863 4.44358 4.59272 4.64197 4.66787 4.74129 4.76707 4.87134 4.90318 4.97500 5.12450 5.14699 5.18787 5.25817 5.35216 5.51052 5.62826 5.89344 6.01226 6.17401 6.29732 6.52732 6.84145 6.88053 7.39051 8.91041 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026645 B = 0.004164 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.590905 B = 6722.777253 C = 7489.573214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.091 4.091 3 C -0.233 4.233 4 C 0.008 3.992 5 O -0.167 6.167 6 C -0.120 4.120 7 C 0.596 3.404 8 O -0.556 6.556 9 N -0.605 5.605 10 C 0.115 3.885 11 C 0.054 3.946 12 N -0.537 5.537 13 C 0.208 3.792 14 C -0.524 4.524 15 H 0.069 0.931 16 C 0.002 3.998 17 N -0.937 5.937 18 Si 0.971 3.029 19 H -0.265 1.265 20 H -0.286 1.286 21 H -0.267 1.267 22 C 0.042 3.958 23 C 0.127 3.873 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.184 0.816 28 H 0.254 0.746 29 H 0.086 0.914 30 H 0.117 0.883 31 H 0.010 0.990 32 H 0.089 0.911 33 H -0.042 1.042 34 H 0.008 0.992 35 H 0.264 0.736 36 H 0.014 0.986 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.194 18.570 -9.835 21.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.251 4.251 4 C -0.061 4.061 5 O -0.064 6.064 6 C -0.171 4.171 7 C 0.386 3.614 8 O -0.437 6.437 9 N -0.337 5.337 10 C -0.006 4.006 11 C -0.075 4.075 12 N -0.262 5.262 13 C 0.082 3.918 14 C -0.562 4.562 15 H 0.088 0.912 16 C -0.196 4.196 17 N -0.577 5.577 18 Si 0.796 3.204 19 H -0.189 1.189 20 H -0.212 1.212 21 H -0.192 1.192 22 C -0.087 4.087 23 C 0.005 3.995 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.109 0.891 27 H 0.202 0.798 28 H 0.270 0.730 29 H 0.105 0.895 30 H 0.134 0.866 31 H 0.029 0.971 32 H 0.107 0.893 33 H -0.024 1.024 34 H 0.026 0.974 35 H 0.073 0.927 36 H 0.032 0.968 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.300 17.936 -10.199 21.573 hybrid contribution 0.304 -0.279 1.318 1.381 sum -5.996 17.657 -8.880 20.654 Atomic orbital electron populations 1.20394 0.87909 1.03306 1.03139 1.21022 0.98260 0.91659 0.98506 1.22076 0.92116 1.00645 1.10306 1.25464 1.01532 0.80218 0.98877 1.84208 1.27308 1.23834 1.71020 1.21579 0.82676 0.94047 1.18771 1.16965 0.84952 0.82820 0.76625 1.90781 1.16854 1.82871 1.53233 1.48201 1.10484 1.06677 1.68311 1.22377 0.80086 1.00638 0.97540 1.22415 1.01773 0.88028 0.95281 1.62033 1.12642 1.05611 1.45916 1.19394 0.95067 0.91240 0.86147 1.21421 0.91646 1.27258 1.15864 0.91241 1.25939 1.04165 0.94715 0.94824 1.70088 1.37848 1.29852 1.19901 0.85404 0.78694 0.78469 0.77870 1.18925 1.21202 1.19181 1.22460 0.88716 1.00914 0.96602 1.21746 1.01270 0.78572 0.97892 0.90263 0.92220 0.89100 0.79829 0.73028 0.89547 0.86602 0.97127 0.89319 1.02391 0.97424 0.92700 0.96751 0.89407 0.88494 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.90 9.74 71.24 0.69 -1.21 16 2 C -0.09 -2.11 6.20 -19.74 -0.12 -2.23 16 3 C -0.23 -3.68 10.83 22.07 0.24 -3.44 16 4 C 0.01 0.11 12.08 67.10 0.81 0.92 16 5 O -0.17 -3.77 7.28 -5.03 -0.04 -3.81 16 6 C -0.12 -3.28 6.76 24.07 0.16 -3.12 16 7 C 0.60 19.36 7.65 86.44 0.66 20.02 16 8 O -0.56 -20.11 14.32 -4.33 -0.06 -20.17 16 9 N -0.61 -19.39 3.00 -821.77 -2.47 -21.86 16 10 C 0.12 3.52 6.26 86.50 0.54 4.06 16 11 C 0.05 2.07 5.47 86.54 0.47 2.54 16 12 N -0.54 -23.12 4.62 -898.87 -4.15 -27.28 16 13 C 0.21 11.05 4.72 85.56 0.40 11.46 16 14 C -0.52 -29.01 8.41 25.60 0.22 -28.79 16 15 H 0.07 3.69 7.13 -2.91 -0.02 3.67 16 16 C 0.00 0.09 5.46 84.65 0.46 0.55 16 17 N -0.94 -56.14 13.29 21.44 0.28 -55.85 16 18 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 19 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 20 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 22 C 0.04 1.57 5.62 86.38 0.49 2.05 16 23 C 0.13 4.02 6.61 86.35 0.57 4.59 16 24 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 1.55 6.65 -2.39 -0.02 1.53 16 26 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.18 1.70 8.06 -2.91 -0.02 1.67 16 28 H 0.25 1.05 8.06 -2.91 -0.02 1.03 16 29 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.12 3.15 4.38 -11.28 -0.05 3.10 16 31 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.09 3.54 6.67 -2.39 -0.02 3.53 16 33 H -0.04 -2.44 8.12 -2.38 -0.02 -2.46 16 34 H 0.01 0.44 7.97 -2.39 -0.02 0.42 16 35 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 36 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.09 3.14 7.99 -2.39 -0.02 3.12 16 38 H 0.10 2.96 7.04 -2.38 -0.02 2.94 16 39 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -70.00 318.41 2.20 -67.80 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 1.01 Total: 8.51 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 5.60 Total: 7.40 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -6.34 Total: -104.98 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.10 Total: -23.99 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -70.00 2.20 -67.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602209843.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.750 kcal (2) G-P(sol) polarization free energy of solvation -70.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds