Wall clock time and date at job start Mon Mar 30 2020 23:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38211 * 119.93561 * 2 1 4 4 C 1.38769 * 120.08399 * 180.02562 * 3 2 1 5 5 O 1.35901 * 120.02008 * 180.02562 * 4 3 2 6 6 C 1.38624 * 119.95858 * 359.72631 * 4 3 2 7 7 C 1.38755 * 119.87358 * 0.54724 * 6 4 3 8 8 N 1.39922 * 120.03764 * 179.74945 * 7 6 4 9 9 C 1.34772 * 120.00416 * 326.51253 * 8 7 6 10 10 O 1.21296 * 119.99772 * 354.72999 * 9 8 7 11 11 C 1.50700 * 120.00414 * 174.73273 * 9 8 7 12 12 H 1.08998 * 109.46367 * 320.00094 * 11 9 8 13 13 N 1.46894 * 109.47163 * 200.00231 * 11 9 8 14 14 C 1.52999 * 109.47077 * 79.99783 * 11 9 8 15 15 C 1.53007 * 109.46773 * 185.00324 * 14 11 9 16 16 C 1.50704 * 109.46828 * 180.02562 * 15 14 11 17 17 H 1.07997 * 119.99873 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99634 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00418 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99751 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47061 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46979 * 119.99665 * 20 18 16 23 23 H 1.48496 * 109.47147 * 239.99754 * 20 18 16 24 24 C 1.38119 * 119.93814 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47334 * 269.97682 * 1 2 3 26 26 H 1.09000 * 109.47311 * 29.97700 * 1 2 3 27 27 H 1.09004 * 109.47262 * 149.97610 * 1 2 3 28 28 H 1.08003 * 119.96152 * 359.97438 * 3 2 1 29 29 H 0.96693 * 114.00205 * 89.99671 * 5 4 3 30 30 H 1.07998 * 120.06260 * 180.27587 * 6 4 3 31 31 H 0.97004 * 119.99350 * 146.51695 * 8 7 6 32 32 H 1.00904 * 111.00109 * 176.04312 * 13 11 9 33 33 H 1.00897 * 111.00065 * 299.99396 * 13 11 9 34 34 H 1.08996 * 109.47162 * 65.00862 * 14 11 9 35 35 H 1.09004 * 109.47197 * 305.00114 * 14 11 9 36 36 H 1.08996 * 109.46837 * 60.00339 * 15 14 11 37 37 H 1.08995 * 109.46982 * 299.99626 * 15 14 11 38 38 H 0.96999 * 120.00369 * 180.02562 * 19 18 16 39 39 H 1.07990 * 119.98269 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1977 0.0000 4 6 3.5844 1.2013 -0.0005 5 8 4.2612 2.3798 0.0000 6 6 4.2797 0.0021 0.0047 7 6 3.5856 -1.1993 -0.0011 8 7 4.2840 -2.4118 -0.0012 9 6 5.4665 -2.5083 -0.6405 10 8 5.8798 -1.5747 -1.2954 11 6 6.2752 -3.7761 -0.5419 12 1 6.2245 -4.1610 0.4766 13 7 7.6741 -3.4928 -0.8892 14 6 5.7103 -4.8179 -1.5095 15 6 6.4507 -6.1436 -1.3207 16 6 5.8947 -7.1696 -2.2743 17 1 5.0933 -6.9030 -2.9473 18 6 6.4086 -8.4490 -2.2867 19 7 7.3842 -8.7738 -1.4668 20 14 5.7190 -9.7210 -3.4682 21 1 4.6358 -9.1082 -4.2783 22 1 6.7998 -10.1982 -4.3679 23 1 5.1737 -10.8676 -2.6981 24 6 2.1963 -1.1969 -0.0005 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6550 2.1321 -0.0004 29 1 4.4574 2.7203 0.8835 30 1 5.3597 0.0030 0.0088 31 1 3.9170 -3.1828 0.4589 32 1 8.2498 -4.3127 -0.7685 33 1 7.7478 -3.1345 -1.8295 34 1 5.8421 -4.4711 -2.5344 35 1 4.6488 -4.9628 -1.3085 36 1 6.3190 -6.4905 -0.2959 37 1 7.5121 -5.9988 -1.5218 38 1 7.7460 -9.6737 -1.4758 39 1 1.6550 -2.1314 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602569191.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:41 Heat of formation + Delta-G solvation = -70.740561 kcal Electronic energy + Delta-G solvation = -20870.355877 eV Core-core repulsion = 17584.244084 eV Total energy + Delta-G solvation = -3286.111793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.68158 -39.23793 -37.13391 -35.67197 -34.81652 -32.91577 -31.77445 -29.97208 -29.53560 -27.15724 -26.58308 -24.25436 -22.43592 -22.02367 -20.55040 -19.81429 -18.45914 -17.47100 -16.63135 -16.39992 -16.23494 -15.77577 -14.99438 -14.90431 -14.48942 -14.36117 -14.18227 -13.77848 -13.37005 -13.23045 -13.02976 -12.80609 -12.37057 -12.22558 -12.00591 -11.78324 -11.64833 -11.16194 -10.99825 -10.86246 -10.67413 -10.29997 -10.05431 -9.94433 -9.37670 -9.26468 -8.68934 -8.48588 -8.30742 -8.16519 -6.12667 -4.15995 1.07950 1.18395 2.71525 3.00720 3.23707 3.31967 3.35797 3.50779 4.08185 4.36152 4.63088 4.81510 4.99777 5.04362 5.07712 5.11370 5.23678 5.30958 5.38011 5.46501 5.56061 5.59832 5.64752 5.79393 6.15302 6.18817 6.26133 6.34718 6.36944 6.43928 6.79417 6.81955 7.28429 7.45267 7.49436 7.53690 7.57158 7.81650 7.84470 8.22038 8.26763 8.90134 9.49385 10.98219 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025122 B = 0.003356 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.277943 B = 8341.303993 C = 9192.637250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.052 4.052 3 C -0.169 4.169 4 C 0.127 3.873 5 O -0.497 6.497 6 C -0.155 4.155 7 C 0.179 3.821 8 N -0.678 5.678 9 C 0.524 3.476 10 O -0.513 6.513 11 C 0.077 3.923 12 H 0.101 0.899 13 N -0.830 5.830 14 C -0.139 4.139 15 C 0.024 3.976 16 C -0.525 4.525 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.160 4.160 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.126 0.874 29 H 0.389 0.611 30 H 0.142 0.858 31 H 0.414 0.586 32 H 0.357 0.643 33 H 0.347 0.653 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.885 16.794 7.344 21.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.053 4.053 3 C -0.188 4.188 4 C 0.082 3.918 5 O -0.307 6.307 6 C -0.176 4.176 7 C 0.083 3.917 8 N -0.324 5.324 9 C 0.312 3.688 10 O -0.386 6.386 11 C -0.038 4.038 12 H 0.119 0.881 13 N -0.363 5.363 14 C -0.179 4.179 15 C -0.013 4.013 16 C -0.563 4.563 17 H 0.074 0.926 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.180 4.180 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.144 0.856 29 H 0.245 0.755 30 H 0.160 0.840 31 H 0.251 0.749 32 H 0.173 0.827 33 H 0.160 0.840 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.428 17.736 6.901 21.701 hybrid contribution -0.569 -1.909 -0.672 2.102 sum -10.997 15.827 6.230 20.254 Atomic orbital electron populations 1.20790 0.90645 1.03052 1.02463 1.19500 0.96004 0.91961 0.97866 1.21197 0.93270 0.98246 1.06092 1.18209 0.89596 0.84882 0.99145 1.84838 1.76719 1.35753 1.33355 1.21416 1.01755 0.90481 1.03948 1.17539 0.90620 0.85756 0.97738 1.43690 1.21992 1.12045 1.54667 1.21196 0.80162 0.90085 0.77308 1.90680 1.69035 1.40066 1.38799 1.21482 0.89740 0.90596 1.02012 0.88110 1.58744 1.06278 1.37932 1.33344 1.22420 1.00748 0.97024 0.97693 1.19112 0.95339 0.89349 0.97501 1.21208 1.19213 0.95497 1.20354 0.92632 1.25013 0.94969 0.98560 0.95767 1.69953 1.25934 1.19925 1.37337 0.86524 0.79032 0.81430 0.80970 1.19738 1.20918 1.20914 1.20822 0.92012 0.98585 1.06612 0.90947 0.91386 0.91234 0.85578 0.75538 0.84034 0.74944 0.82739 0.83999 0.92488 0.92462 0.96235 0.96317 0.92889 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.00 0.36 -0.45 16 2 C -0.05 -0.54 5.87 -104.68 -0.61 -1.15 16 3 C -0.17 -1.82 9.63 -39.40 -0.38 -2.20 16 4 C 0.13 1.59 6.70 -39.24 -0.26 1.33 16 5 O -0.50 -5.61 13.50 -19.43 -0.26 -5.87 16 6 C -0.16 -2.22 8.59 -39.25 -0.34 -2.56 16 7 C 0.18 2.39 6.27 -83.72 -0.53 1.87 16 8 N -0.68 -8.96 5.34 -9.88 -0.05 -9.01 16 9 C 0.52 8.53 6.81 -10.99 -0.07 8.45 16 10 O -0.51 -9.88 13.95 5.54 0.08 -9.80 16 11 C 0.08 1.26 3.21 -68.87 -0.22 1.03 16 12 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 13 N -0.83 -13.85 8.94 -5.66 -0.05 -13.90 16 14 C -0.14 -2.64 4.78 -26.73 -0.13 -2.77 16 15 C 0.02 0.57 4.74 -27.88 -0.13 0.44 16 16 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 20 Si 0.89 21.06 29.54 -169.99 -5.02 16.03 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 C -0.16 -1.79 9.61 -39.37 -0.38 -2.17 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 27 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 28 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 29 H 0.39 2.30 9.06 45.56 0.41 2.71 16 30 H 0.14 2.29 6.42 -52.49 -0.34 1.95 16 31 H 0.41 4.32 8.82 -40.82 -0.36 3.96 16 32 H 0.36 5.95 7.55 -39.29 -0.30 5.65 16 33 H 0.35 5.90 8.58 -39.29 -0.34 5.56 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 333.03 15.07 5.02 5.02 Total: -1.00 -32.92 333.03 -7.27 -40.19 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -4.61 Total: 13.44 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -3.10 Total: -11.15 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.63 Total: -47.86 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.18 Total: -15.67 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.92 -7.27 -40.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602569191.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.548 kcal (2) G-P(sol) polarization free energy of solvation -32.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds