Wall clock time and date at job start Mon Mar 30 2020 23:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38211 * 119.93561 * 2 1 4 4 C 1.38769 * 120.08399 * 180.02562 * 3 2 1 5 5 O 1.35901 * 120.02008 * 180.02562 * 4 3 2 6 6 C 1.38624 * 119.95858 * 359.72631 * 4 3 2 7 7 C 1.38755 * 119.87358 * 0.54724 * 6 4 3 8 8 N 1.39922 * 120.03764 * 179.74945 * 7 6 4 9 9 C 1.34772 * 120.00416 * 326.51253 * 8 7 6 10 10 O 1.21296 * 119.99772 * 354.72999 * 9 8 7 11 11 C 1.50700 * 120.00414 * 174.73273 * 9 8 7 12 12 H 1.08998 * 109.46367 * 320.00094 * 11 9 8 13 13 N 1.46894 * 109.47163 * 200.00231 * 11 9 8 14 14 C 1.52999 * 109.47077 * 79.99783 * 11 9 8 15 15 C 1.53007 * 109.46773 * 185.00324 * 14 11 9 16 16 C 1.50704 * 109.46828 * 180.02562 * 15 14 11 17 17 H 1.07997 * 119.99873 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99634 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00418 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99751 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47061 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46979 * 119.99665 * 20 18 16 23 23 H 1.48496 * 109.47147 * 239.99754 * 20 18 16 24 24 C 1.38119 * 119.93814 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47334 * 269.97682 * 1 2 3 26 26 H 1.09000 * 109.47311 * 29.97700 * 1 2 3 27 27 H 1.09004 * 109.47262 * 149.97610 * 1 2 3 28 28 H 1.08003 * 119.96152 * 359.97438 * 3 2 1 29 29 H 0.96693 * 114.00205 * 89.99671 * 5 4 3 30 30 H 1.07998 * 120.06260 * 180.27587 * 6 4 3 31 31 H 0.97004 * 119.99350 * 146.51695 * 8 7 6 32 32 H 1.00904 * 111.00109 * 176.04312 * 13 11 9 33 33 H 1.00897 * 111.00065 * 299.99396 * 13 11 9 34 34 H 1.08996 * 109.47162 * 65.00862 * 14 11 9 35 35 H 1.09004 * 109.47197 * 305.00114 * 14 11 9 36 36 H 1.08996 * 109.46837 * 60.00339 * 15 14 11 37 37 H 1.08995 * 109.46982 * 299.99626 * 15 14 11 38 38 H 0.96999 * 120.00369 * 180.02562 * 19 18 16 39 39 H 1.07990 * 119.98269 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1977 0.0000 4 6 3.5844 1.2013 -0.0005 5 8 4.2612 2.3798 0.0000 6 6 4.2797 0.0021 0.0047 7 6 3.5856 -1.1993 -0.0011 8 7 4.2840 -2.4118 -0.0012 9 6 5.4665 -2.5083 -0.6405 10 8 5.8798 -1.5747 -1.2954 11 6 6.2752 -3.7761 -0.5419 12 1 6.2245 -4.1610 0.4766 13 7 7.6741 -3.4928 -0.8892 14 6 5.7103 -4.8179 -1.5095 15 6 6.4507 -6.1436 -1.3207 16 6 5.8947 -7.1696 -2.2743 17 1 5.0933 -6.9030 -2.9473 18 6 6.4086 -8.4490 -2.2867 19 7 7.3842 -8.7738 -1.4668 20 14 5.7190 -9.7210 -3.4682 21 1 4.6358 -9.1082 -4.2783 22 1 6.7998 -10.1982 -4.3679 23 1 5.1737 -10.8676 -2.6981 24 6 2.1963 -1.1969 -0.0005 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6550 2.1321 -0.0004 29 1 4.4574 2.7203 0.8835 30 1 5.3597 0.0030 0.0088 31 1 3.9170 -3.1828 0.4589 32 1 8.2498 -4.3127 -0.7685 33 1 7.7478 -3.1345 -1.8295 34 1 5.8421 -4.4711 -2.5344 35 1 4.6488 -4.9628 -1.3085 36 1 6.3190 -6.4905 -0.2959 37 1 7.5121 -5.9988 -1.5218 38 1 7.7460 -9.6737 -1.4758 39 1 1.6550 -2.1314 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602569191.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:40 Heat of formation + Delta-G solvation = -95.999364 kcal Electronic energy + Delta-G solvation = -20871.451181 eV Core-core repulsion = 17584.244084 eV Total energy + Delta-G solvation = -3287.207097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.78736 -40.29053 -38.07250 -37.14637 -35.91580 -34.86784 -32.65707 -31.71763 -30.51694 -28.21490 -27.83173 -25.93226 -23.43593 -23.22182 -22.03064 -21.04248 -19.45513 -18.83577 -18.18506 -17.61834 -17.21533 -16.83196 -16.58170 -16.15004 -15.92192 -15.64005 -15.49929 -14.78201 -14.76008 -14.39257 -14.19402 -13.93191 -13.54268 -13.48066 -13.22430 -12.96048 -12.75731 -12.69543 -12.52167 -12.47973 -11.88633 -11.82885 -11.58510 -11.31254 -11.27531 -10.78655 -10.57089 -9.71938 -9.56744 -9.16068 -8.22287 -6.32419 0.15817 0.27011 1.38422 1.40351 1.47947 1.52219 1.89720 2.39486 2.62223 3.11732 3.22992 3.63308 3.68934 3.86756 4.07287 4.17699 4.18057 4.19378 4.38168 4.42695 4.62221 4.71071 4.79637 4.87736 4.89522 5.06141 5.16190 5.23532 5.37945 5.41909 5.46146 5.56125 5.64255 5.79920 5.91226 6.01345 6.20270 6.34534 6.43078 6.82619 6.83258 7.03513 7.36928 8.88599 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025122 B = 0.003356 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.277943 B = 8341.303993 C = 9192.637250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.049 4.049 3 C -0.167 4.167 4 C 0.120 3.880 5 O -0.510 6.510 6 C -0.182 4.182 7 C 0.158 3.842 8 N -0.663 5.663 9 C 0.527 3.473 10 O -0.547 6.547 11 C 0.085 3.915 12 H 0.117 0.883 13 N -0.830 5.830 14 C -0.123 4.123 15 C 0.030 3.970 16 C -0.544 4.544 17 H 0.055 0.945 18 C 0.006 3.994 19 N -0.926 5.926 20 Si 0.958 3.042 21 H -0.266 1.266 22 H -0.281 1.281 23 H -0.277 1.277 24 C -0.160 4.160 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.149 0.851 29 H 0.410 0.590 30 H 0.114 0.886 31 H 0.427 0.573 32 H 0.356 0.644 33 H 0.344 0.656 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.005 0.995 37 H 0.003 0.997 38 H 0.264 0.736 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.414 17.126 7.463 22.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.049 4.049 3 C -0.186 4.186 4 C 0.075 3.925 5 O -0.323 6.323 6 C -0.203 4.203 7 C 0.064 3.936 8 N -0.310 5.310 9 C 0.315 3.685 10 O -0.423 6.423 11 C -0.030 4.030 12 H 0.135 0.865 13 N -0.362 5.362 14 C -0.162 4.162 15 C -0.008 4.008 16 C -0.582 4.582 17 H 0.073 0.927 18 C -0.193 4.193 19 N -0.566 5.566 20 Si 0.784 3.216 21 H -0.190 1.190 22 H -0.207 1.207 23 H -0.202 1.202 24 C -0.180 4.180 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.167 0.833 29 H 0.269 0.731 30 H 0.132 0.868 31 H 0.267 0.733 32 H 0.171 0.829 33 H 0.157 0.843 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.024 0.976 37 H 0.021 0.979 38 H 0.073 0.927 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.988 18.077 7.059 23.352 hybrid contribution 0.185 -1.921 -0.660 2.040 sum -12.803 16.156 6.399 21.584 Atomic orbital electron populations 1.20870 0.88042 1.04025 1.03830 1.19930 0.97799 0.91259 0.95956 1.21476 0.92480 0.99612 1.05018 1.18347 0.90457 0.84583 0.99107 1.84772 1.76812 1.35278 1.35457 1.21354 1.00621 0.91997 1.06331 1.17727 0.91595 0.85177 0.99129 1.43479 1.20942 1.12770 1.53804 1.21045 0.80842 0.89395 0.77240 1.90671 1.70047 1.41077 1.40531 1.21403 0.89382 0.90165 1.02044 0.86485 1.58754 1.06560 1.37733 1.33179 1.22168 1.00970 0.95374 0.97734 1.18978 0.94849 0.91038 0.95903 1.21646 1.19221 0.96545 1.20815 0.92706 1.25850 0.95296 1.00733 0.97413 1.70059 1.27146 1.20532 1.38878 0.85498 0.78428 0.78864 0.78857 1.19002 1.20688 1.20212 1.21091 0.90997 1.00094 1.05796 0.89236 0.90258 0.90483 0.83331 0.73072 0.86835 0.73350 0.82874 0.84277 0.93733 0.91166 0.97618 0.97882 0.92727 0.83191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 71.24 0.71 -0.47 16 2 C -0.05 -0.86 5.87 -19.90 -0.12 -0.98 16 3 C -0.17 -3.24 9.63 22.39 0.22 -3.02 16 4 C 0.12 2.94 6.70 22.49 0.15 3.09 16 5 O -0.51 -11.25 13.50 -92.43 -1.25 -12.50 16 6 C -0.18 -5.29 8.59 22.49 0.19 -5.10 16 7 C 0.16 4.13 6.27 38.14 0.24 4.37 16 8 N -0.66 -17.08 5.34 -303.55 -1.62 -18.70 16 9 C 0.53 17.16 6.81 87.66 0.60 17.75 16 10 O -0.55 -21.62 13.95 -3.08 -0.04 -21.66 16 11 C 0.09 2.77 3.21 44.17 0.14 2.92 16 12 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 13 N -0.83 -28.14 8.94 -171.82 -1.54 -29.68 16 14 C -0.12 -4.63 4.78 30.60 0.15 -4.49 16 15 C 0.03 1.41 4.74 29.85 0.14 1.55 16 16 C -0.54 -29.43 9.11 25.60 0.23 -29.19 16 17 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 18 C 0.01 0.31 5.46 84.65 0.46 0.77 16 19 N -0.93 -53.66 13.29 21.45 0.28 -53.38 16 20 Si 0.96 42.94 29.54 68.60 2.03 44.96 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 24 C -0.16 -3.24 9.61 22.41 0.22 -3.03 16 25 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 27 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 28 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 29 H 0.41 4.58 9.06 -74.06 -0.67 3.91 16 30 H 0.11 3.90 6.42 -2.91 -0.02 3.88 16 31 H 0.43 8.31 8.82 -92.71 -0.82 7.49 16 32 H 0.36 12.12 7.55 -89.69 -0.68 11.44 16 33 H 0.34 12.02 8.58 -89.70 -0.77 11.25 16 34 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 36 H 0.01 0.27 8.14 -2.39 -0.02 0.26 16 37 H 0.00 0.15 6.87 -2.39 -0.02 0.13 16 38 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 39 H 0.15 2.33 8.06 -2.92 -0.02 2.31 16 Total: -1.00 -70.94 333.03 -0.63 -71.57 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: -1.83 Total: 35.20 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 3.33 Total: -15.82 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -2.87 Total: -101.76 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -1.29 Total: -34.16 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -70.94 -0.63 -71.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602569191.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.427 kcal (2) G-P(sol) polarization free energy of solvation -70.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds